BAC Information

Click to search

BAC

Clone NameB6Ng01-303N13
Chromosome1 (Build37)
Map Location 175,288,816 - 175,289,913
singlet/doubletsinglet
Overlap geneCadm3
Upstream geneKcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc
Downstream geneAim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303N13.bB6Ng01-303N13.g
ACCGA097548GA097549
length8371,098
definitionB6Ng01-303N13.b B6Ng01-303N13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaataaagtaaactcaaatggctgagataacacagaaaggtga
gccatcagggaaatgcagtatcagagtagttttaatatctattatgctga
tggcttgtcatgtttcaccaacatctgtgtttcattatttgacagtcttt
tgtttgcttttatgtcccattttaatagaactatttgttcttgtgatgct
cagatttttagttcattgtatattctgtgttctaacctgctgtcagatgc
ttgattgataaaaaagtttttcctaccctgtaggctgacaataatggcag
cctttgctcaagctttttacattataacgtctcatttattaactgttgat
cttaagacctctgctatcagggatgattcagaaagtcctttctcattcct
acgacttcaagcctattcctcgcttaatcttgtatcagattcaggattat
cttgtcttattttgaaatcattgatgcatttggagttgattttttgtgta
gagtggtatatatatatctatatttattggatgtctacatgtagctattt
agtttgaccagtaccacttgttaaagtttctgagaaagtattttctcctg
tgtatatttattttttatttttgtaaaacaatcagatgtctttaagtgtg
tggacttatgtctgggtcttcaactcaatttcatttatcaatatatctct
ttatatgccaataccatgctgtttttattattaaagctatgtatcacata
ttgaaatatagataatgatagctacagcagttcttttattacccaatgct
gtatttgctatccacttgtgtgtgtgtgtgtgtgtgt
gaattcatttagtgtattgaaaggttatgggaagataggaaattgagact
gagccggagagctcagaaaatcagggagggacttgcagaaaacaaacaaa
caaacaaacaagcaaattacaggagtgcgagagatctcaagtagagcttt
cagcactttctcccatcctgccataactacctggcgcctatgtacctgac
ctttttgcatgcatatggaaattcccttcttacagtgtctcatcccatac
attgctgtttgagtggtgtttcagatctttcagagtgatggcttggtgtg
atgtgataacaatggtttggaaaagtttaatttcttctgaggtacgcagg
aaggcatttatctctgctggctctaatattcctgacttgtttttactgtt
tcccttcactggatgatcagagacagagtgtgaatgacaggttcagggca
atggttaggagtgctacatgaagaaaaatatgtgttccgctctacacacc
cactcacgctactcgagttcccctgactcccctaagcctaactgaaattt
attctctctctctctctctttctttctctctctctccttcattcttatca
cttaaaaaagaagatctgtatttttaagaatgcggcattgttcatgccag
ccctacttcatgcttttctgaaagtttaactcttctatgagacagacaca
ttcttccaagtctacaaatctcacagtctccaagatgataaataatgttg
ttttgacagaaaggccctcttcccctcctttcaaacctccttgaatgtct
cagcttcagtgtggttgtctcctgtttgctccctaagatgcttgcatttt
ccaatgtggtcatcctttctctctccttcagcatgtgtccttcaacacac
tacgattctcattattcatatgcctgttttttattttttttctgacacag
atacacagctatttattatgacccagatacagagcccatttcacatgctc
atattaatcagaaccccttactttccagaaaaccatatgctactcagagc
ttctccccaaagcagaatttagtctcttttcttctgctcaactcccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_175288816_175289913
seq2: B6Ng01-303N13.g_65_1162

seq1  GAATTCATTTAGTGTATTGAAAGGTTATGGGAAGATAGGAAATTGAGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTAGTGTATTGAAAGGTTATGGGAAGATAGGAAATTGAGACT  50

seq1  GAGCCGGAGAGCTCAGAAAATCAGGGAGGGACTTGCAGAAAACAAACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCGGAGAGCTCAGAAAATCAGGGAGGGACTTGCAGAAAACAAACAAA  100

seq1  CAAACAAACAAGCAAATTACAGGAGTGCGAGAGATCTCAAGTAGAGCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAGCAAATTACAGGAGTGCGAGAGATCTCAAGTAGAGCTTT  150

seq1  CAGCACTTTCTCCCATCCTGCCATAACTACCTGGCGCCTATGTACCTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTTTCTCCCATCCTGCCATAACTACCTGGCGCCTATGTACCTGAC  200

seq1  CTTTTTGCATGCATATGGAAATTCCCTTCTTACAGTGTCTCATCCCATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGCATGCATATGGAAATTCCCTTCTTACAGTGTCTCATCCCATAC  250

seq1  ATTGCTGTTTGAGTGGTGTTTCAGATCTTTCAGAGTGATGGCTTGGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGTTTGAGTGGTGTTTCAGATCTTTCAGAGTGATGGCTTGGTGTG  300

seq1  ATGTGATAACAATGGTTTGGAAAAGTTTAATTTCTTCTGAGGTACGCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATAACAATGGTTTGGAAAAGTTTAATTTCTTCTGAGGTACGCAGG  350

seq1  AAGGCATTTATCTCTGCTGGCTCTAATATTCCTGACTTGTTTTTACTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATTTATCTCTGCTGGCTCTAATATTCCTGACTTGTTTTTACTGTT  400

seq1  TCCCTTCACTGGATGATCAGAGACAGAGTGTGAATGACAGGTTCAGGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCACTGGATGATCAGAGACAGAGTGTGAATGACAGGTTCAGGGCA  450

seq1  ATGGTTAGGAGTGCTACATGAAGAAAAATATGTGTTCCGCTCTACACACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTAGGAGTGCTACATGAAGAAAAATATGTGTTCCGCTCTACACACC  500

seq1  CACTCACGCTACTCGAGTTCCCCTGACTCCCCTAAGCCTAACTGAAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACGCTACTCGAGTTCCCCTGACTCCCCTAAGCCTAACTGAAATTT  550

seq1  ATTCTCTCTCTCTCTCTCTTTCTTTCTCTCTCTCTCCTTCATTCTTATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTCTCTCTCTCTCTTTCTTTCTCTCTCTCTCCTTCATTCTTATCA  600

seq1  CTTAAAAAAGAAGATCTGTATTTTTAAGAATGCGGCATTGTTCATGCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAAAGAAGATCTGTATTTTTAAGAATGCGGCATTGTTCATGCCAG  650

seq1  CCCTACTTCATGCTTTTCTGAAAGTTTAACTCTTCTATGAGACAGACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACTTCATGCTTTTCTGAAAGTTTAACTCTTCTATGAGACAGACACA  700

seq1  TTCTTCCAAGTCTACAAATCTCACAGTCTCCAAGATGATAAATAATGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCAAGTCTACAAATCTCACAGTCTCCAAGATGATAAATAATGTTG  750

seq1  TTTTGACAGAAAGGCCCTCTTCCCCTCCTTTCAAACCTCCTTGAATGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACAGAAAGGCCCTCTTCCCCTCCTTTCAAACCTCCTTGAATGTCT  800

seq1  CAGCTTCAGTGTGGTTGTCTCCTGTTTGCTCCCTAAGATGCTTGCATTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCAGTGTGGTTGTCTCCTGTTTGCTCCCTAAGATGCTTGCATTTT  850

seq1  CCAATGTGGTCATCCTTTCTCTCTCCTTCAGCATGTGTCCTTCAACACAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGTGGTCATCCTTTCTCTCTCCTTCAGCATGTGTCCTTCAACACAC  900

seq1  TACGATTCTCATTATTCATATGCCTGTTTTT--ATTTTTTTCTGACACAG  948
      |||||||||||||||||||||||||||||||   ||||||||||||||||
seq2  TACGATTCTCATTATTCATATGCCTGTTTTTTATTTTTTTTCTGACACAG  950

seq1  ATACACAGCTA-TTATTATGACCCAGATACAGAGCCCATTTCACATGCTC  997
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATACACAGCTATTTATTATGACCCAGATACAGAGCCCATTTCACATGCTC  1000

seq1  ATATTAATCAGAACCCCTTAC-TTCCAGAAAACCATATGGCTTAACCTCA  1046
      ||||||||||||||||||||| |||||||||||||||| |||    ||||
seq2  ATATTAATCAGAACCCCTTACTTTCCAGAAAACCATAT-GCT---ACTCA  1046

seq1  GAGCTTCTCCCCAAAGCAGAATTTAGTCTC-TTTCTTCTGCTCAAACTCC  1095
      |||||||||||||||||||||||||||||| |||||||||||| ||||||
seq2  GAGCTTCTCCCCAAAGCAGAATTTAGTCTCTTTTCTTCTGCTC-AACTCC  1095

seq1  CCA  1098
      |||
seq2  CCA  1098