BAC Information

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BAC

Clone NameB6Ng01-304J08
Chromosome1 (Build37)
Map Location 92,788,863 - 92,929,479
singlet/doubletdoublet
Overlap geneMlph, Prlh, Rab17
Upstream geneCentg2, Gbx2, Asb18, Iqca, Cxcr7, Cops8, Col6a3
Downstream geneLrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1, Twist2, Hdac4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304J08.bB6Ng01-304J08.g
ACCGA098104GA098105
length1,149488
definitionB6Ng01-304J08.b B6Ng01-304J08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,928,332 - 92,929,479)(92,788,863 - 92,789,354)
sequence
gaattctcccagacatacggagctccccccacccctccccgccccaatcc
aggacaggaataggggccactcttcagacatcctctgggtacacagagca
ggagcaccctgatagctgcttgctcatatcagccttgacagctgctatga
cagagttggtgaggttatggccttgcaacattgtgtaaacaggtgcaggg
tgagtcctgctctagagttgatgtggggctgagtccggcagtcggcagtc
ggcagtcggcagtgggctgtcggatctttcagctcagctccagtgtgagc
ccggggatgctgcttcctgacctccttgacaaatgtttcctctcttgttt
aaaatcccagaagacaaaaagttcccaaaggtgacctggcagagccacac
tcccgagcagaccagtgccatcattccagtcttgacaggtgacccgcctg
aggccatcagcctcaactgacaagcactgaggctgcagatgctaacccac
cctctcagtgaagctgcctgtgtcccacctcgcggtgatgcagaagggac
agactgggttacatttcagagggattcctctggcggcggggaagtcaatt
gaaaatttatcctcaaagcaagtataacttttccttctttaaaatcaccg
acaagctccaacagcctaactcgtgtcagtcccaccttcaaacccctgag
cttacttctggcaacaactgggaaggtgtacaaaaaagaccacaggtgga
tgttcatcccagtgtgatttagaagagaaaaccaaacacctttcaataaa
acctgtggggcacacagaccactcaaaagccattaggtaggaaaaaaaac
acattaaaaaagattataaaagatttcctcaaaacataaagattcaacca
ggaaagtcctaacaagttgcaaagcatgcttccaaacacgaggccactgt
tttccagagtcagcctaagcatgtcactgagccatgttcttttctagaag
gttctccctggaatacacattaacatccctgactactttcagaggtggcc
ctgctctagcctgaacatgctgccccatgtgcagatccctgtgtcctgct
tgccgacaggctatccaatcagcacacctacggagagcaaaaacagcag
caagctcagggtcagcttcaaggactttctaggacattagtgaagaccag
ggagtaaagttcaacctggtttaagtatttgtaaaagcattacttgcaag
cacctatactacaagaaatcacacagatccatacacccgactaatgcaag
gacagaatttgagtatatgtgctatgggaatgccaaggttccaggaggct
aagtttccgtgaaactttttgcctcaggactgcttccaggtttccaggtc
tgtcatgcgagtcactactcgagtgaacgtagcagactggaagttggggg
ggggggtgctaactggttctgaaatggatgtagcttagctagaaaagaga
caatattacatacacctttaagatgattttttttttggagaattcttgct
gatcctgtccaatttttttgatttctagactgcacatttacatgacttgg
gaaggaaattaatatcatccaactttaactacagtgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_92928332_92929479
seq2: B6Ng01-304J08.b_48_1196 (reverse)

seq1  CTGCTG-TTTTGCTCTCTGTAGTTGTGCTGATTGGATAG-CTGTCCGCCA  48
      |||||| |||||||||| |||| |||||||||||||||| ||||| || |
seq2  CTGCTGTTTTTGCTCTCCGTAGGTGTGCTGATTGGATAGCCTGTCGGCAA  50

seq1  GCAGACAACAGGGATCTGCACATGGGGCAGCATGTTCAAGGCTAGAGCAG  98
      ||||   |||||||||||||||||||||||||||||| ||||||||||||
seq2  GCAGGACACAGGGATCTGCACATGGGGCAGCATGTTC-AGGCTAGAGCAG  99

seq1  GGCCACCTCTGGAAGTAGTCAGGGATGTT-ATGTGTATTCCAGGGAGAAC  147
      ||||||||||| ||||||||||||||||| ||||||||||||||||||||
seq2  GGCCACCTCTGAAAGTAGTCAGGGATGTTAATGTGTATTCCAGGGAGAAC  149

seq1  CTTCTAGAAAGAAACATGGCTCAGTGACATGCTTAGGCTGACTCTGGAAA  197
      ||||||||||  ||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGAAAAGAACATGGCTCAGTGACATGCTTAGGCTGACTCTGGAAA  199

seq1  ACAAGTGGCCTCGTGTTTGGAAGCCTGCTTTGCAACTTTGTTAGGACTTT  247
      || ||||||||||||||||||||| ||||||||||| |||||||||||||
seq2  AC-AGTGGCCTCGTGTTTGGAAGCATGCTTTGCAAC-TTGTTAGGACTTT  247

seq1  CCTGGTTGAATCTTTATGTTTTGAGGAAATCTTTTATAATCTTTTTTAAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTGAATCTTTATGTTTTGAGGAAATCTTTTATAATCTTTTTTAAT  297

seq1  GTGTTTTTTTTCCTACCTAATGGCTTTTGAGTGGTCTGTGTGCCCCACAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTTTTTCCTACCTAATGGCTTTTGAGTGGTCTGTGTGCCCCACAG  347

seq1  GTTTTATTGAAAGGTG-TTGGTTTTCTCTTCTAAATCACACTGGGATGAA  396
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTTTTATTGAAAGGTGTTTGGTTTTCTCTTCTAAATCACACTGGGATGAA  397

seq1  CATCCACCTGTGGTCTTTTTTGTACACCTTCCCAGTTGTTGCCAGAAGTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACCTGTGGTCTTTTTTGTACACCTTCCCAGTTGTTGCCAGAAGTA  447

seq1  AGCTCAGGGGTTTGAAGGTGGGACTGACACGAGTTAGGCTGTTGGAGCTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGGGGTTTGAAGGTGGGACTGACACGAGTTAGGCTGTTGGAGCTT  497

seq1  GTCGGTGATTTTAAAGAAGGAAAAGTTATACTTGCTTTGAGGATAAATTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGTGATTTTAAAGAAGGAAAAGTTATACTTGCTTTGAGGATAAATTT  547

seq1  TCAATTGACTTCCCCGCCGCCAGAGGAATCCCTCTGAAATGTAACCCAGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTGACTTCCCCGCCGCCAGAGGAATCCCTCTGAAATGTAACCCAGT  597

seq1  CTGTCCCTTCTGCATCACCGCGAGGTGGGACACAGGCAGCTTCACTGAGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCTTCTGCATCACCGCGAGGTGGGACACAGGCAGCTTCACTGAGA  647

seq1  GGGTGGGTTAGCATCTGCAGCCTCAGTGCTTGTCAGTTGAGGCTGATGGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGTTAGCATCTGCAGCCTCAGTGCTTGTCAGTTGAGGCTGATGGC  697

seq1  CTCAGGCGGGTCACCTGTCAAGACTGGAATGATGGCACTGGTCTGCTCGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCGGGTCACCTGTCAAGACTGGAATGATGGCACTGGTCTGCTCGG  747

seq1  GAGTGTGGCTCTGCCAGGTCACCTTTGGGAACTTTTTGTCTTCTGGGATT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGGCTCTGCCAGGTCACCTTTGGGAACTTTTTGTCTTCTGGGATT  797

seq1  TTAAACAAGAGAGGAAACATTTGTCAAGGAGGTCAGGAAGCAGCATCCCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAAGAGAGGAAACATTTGTCAAGGAGGTCAGGAAGCAGCATCCCC  847

seq1  GGGCTCACACTGGAGCTGAGCTGAAAGATCCGACAGCCCACTGCCGACTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCACACTGGAGCTGAGCTGAAAGATCCGACAGCCCACTGCCGACTG  897

seq1  CCGACTGCCGACTGCCGGACTCAGCCCCACATCAACTCTAGAGCAGGACT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACTGCCGACTGCCGGACTCAGCCCCACATCAACTCTAGAGCAGGACT  947

seq1  CACCCTGCACCTGTTTACACAATGTTGCAAGGCCATAACCTCACCAACTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTGCACCTGTTTACACAATGTTGCAAGGCCATAACCTCACCAACTC  997

seq1  TGTCATAGCAGCTGTCAAGGCTGATATGAGCAAGCAGCTATCAGGGTGCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATAGCAGCTGTCAAGGCTGATATGAGCAAGCAGCTATCAGGGTGCT  1047

seq1  CCTGCTCTGTGTACCCAGAGGATGTCTGAAGAGTGGCCCCTATTCCTGTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCTGTGTACCCAGAGGATGTCTGAAGAGTGGCCCCTATTCCTGTC  1097

seq1  CTGGATTGGGGCGGGGAGGGGTGGGGGGAGCTCCGTATGTCTGGGAGAAT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATTGGGGCGGGGAGGGGTGGGGGGAGCTCCGTATGTCTGGGAGAAT  1147

seq1  TC  1148
      ||
seq2  TC  1149

seq1: chr1_92788863_92789354
seq2: B6Ng01-304J08.g_65_558

seq1  GAATTCCAAGCTCAGGGTCAGCTTCAAGGACTTTCTAGGACATTAGTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCTCAGGGTCAGCTTCAAGGACTTTCTAGGACATTAGTGAA  50

seq1  GACCAGGGAGTAAAGTTCAACCTGGTTTAAGTATTTGTAAAAGCATTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGGAGTAAAGTTCAACCTGGTTTAAGTATTTGTAAAAGCATTACT  100

seq1  TGCAAGCACCTATACTACAAGAAATCACACAGATCCATACACCCGACTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGCACCTATACTACAAGAAATCACACAGATCCATACACCCGACTAA  150

seq1  TGCAAGGACAGAATTTGAGTATATGTGCTATGGGAATGCCAAGGTTCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGACAGAATTTGAGTATATGTGCTATGGGAATGCCAAGGTTCCAG  200

seq1  GAGGCTAAGTTTCCGTGAAACTTTTTGCCTCAGGACTGCTTCCAGGTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTAAGTTTCCGTGAAACTTTTTGCCTCAGGACTGCTTCCAGGTTTC  250

seq1  CAGGTCTGTCATGCGAGTCACTACTCGAGTGAACGTAGCAGACTGGAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTGTCATGCGAGTCACTACTCGAGTGAACGTAGCAGACTGGAAGT  300

seq1  TGGGGGGGGGGGTGCTAACTGGTTCTGAAATGGATGTAGCTTAGCTAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGGGGGGTGCTAACTGGTTCTGAAATGGATGTAGCTTAGCTAGAA  350

seq1  AAGAGACAATATTACATACACCTTTAAGATGA-CAAGACATTGGAGAATT  399
      ||||||||||||||||||||||||||||||||        ||||||||||
seq2  AAGAGACAATATTACATACACCTTTAAGATGATTTTTTTTTTGGAGAATT  400

seq1  CTTGCTGAGCCTGTCCAA-CATCTGGACATCTAGACTGCACATTTACATG  448
      |||||||| |||||||||   | | ||  |||||||||||||||||||||
seq2  CTTGCTGATCCTGTCCAATTTTTTTGATTTCTAGACTGCACATTTACATG  450

seq1  ACTTGGGAAGGAAACATAAGAATATCCAACTTT-ACTACAGTGAA  492
      ||||||||||||||  ||| |  |||||||||| |||||||||||
seq2  ACTTGGGAAGGAAA-TTAATATCATCCAACTTTAACTACAGTGAA  494