BAC Information

Click to search

BAC

Clone NameB6Ng01-304J12
Chromosome1 (Build37)
Map Location 56,842,902 - 56,914,529
singlet/doubletdoublet
Overlap geneSatb2
Upstream gene9130227L01Rik, Hsfy2
Downstream geneEG329160, 9130024F11Rik, LOC100042869, LOC383509, 1700066M21Rik, 1110034B05Rik, 9430016H08Rik, LOC667339, 2810022L02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304J12.bB6Ng01-304J12.g
ACCGA098112GA098113
length24679
definitionB6Ng01-304J12.b B6Ng01-304J12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,914,284 - 56,914,529)(56,842,902 - 56,842,980)
sequence
tctctaacacaccatacaaaatatgacatgcataggctgtctttctcaat
aaagaaattttgtaatacaagagaaattttattaaactaatgcaataacg
acatcttctttgaggatttagcccatcatttttaataataaaaatcagat
tgccattgttgtgcccagtataggttttattcaaatcagactaagtactt
tgtcttcatggctcagcagagctctgggagttgggggtggggggaa

ttgactcccatttggtgacagacttcaaccaaactcagaagtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_56914284_56914529
seq2: B6Ng01-304J12.b_51_296 (reverse)

seq1  TTCCCCCCACCCCCAACTCCCAGAGCTCTGCTGAGCCATGAAGACAAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCCACCCCCAACTCCCAGAGCTCTGCTGAGCCATGAAGACAAAGT  50

seq1  ACTTAGTCTGATTTGAATAAAACCTATACTGGGCACAACAATGGCAATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGTCTGATTTGAATAAAACCTATACTGGGCACAACAATGGCAATCT  100

seq1  GATTTTTATTATTAAAAATGATGGGCTAAATCCTCAAAGAAGATGTCGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTATTATTAAAAATGATGGGCTAAATCCTCAAAGAAGATGTCGTT  150

seq1  ATTGCATTAGTTTAATAAAATTTCTCTTGTATTACAAAATTTCTTTATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATTAGTTTAATAAAATTTCTCTTGTATTACAAAATTTCTTTATTG  200

seq1  AGAAAGACAGCCTATGCATGTCATATTTTGTATGGTGTGTTAGAGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGACAGCCTATGCATGTCATATTTTGTATGGTGTGTTAGAGA  246


seq1: chr1_56842902_56842980
seq2: B6Ng01-304J12.g_73_151

seq1  TTGACTCTCAGCTGGTGACAGACTTCAACCAAACTCAGAAGTGTGTGTGT  50
      ||||||| ||  ||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCCCATTTGGTGACAGACTTCAACCAAACTCAGAAGTGTGTGTGT  50

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTG  79
      |||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTG  79


| Home | SequenceCutter | Blast | Download |