BAC Information

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BAC

Clone NameB6Ng01-305J12
Chromosome1 (Build37)
Map Location 96,931,735 - 97,089,019
singlet/doubletdoublet
Overlap genenone
Upstream genePdcd1, LOC666012, LOC666025, LOC100040685
Downstream geneLOC383603, Tmem157, LOC100041686, Rnu7-ps2, St8sia4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305J12.bB6Ng01-305J12.g
ACCGA098847GA098848
length1,1261,116
definitionB6Ng01-305J12.b B6Ng01-305J12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,931,735 - 96,932,866)(97,087,919 - 97,089,019)
sequence
gaattcttagcttttccatccttcttaaattgttttatgaatgtgatatt
tataattattcatataaaagtagctactacattaaaatgcataagtctaa
gcaaaatagctcacgaaagaaacttgtgatttgtttgcacagctcagaac
acaactgtacatccaaacaaatcaagtattttctaccataatttgaattt
gcaataaataaacattgaaactcacttcatgtatatcagattgttattca
actatttgccttaaatccaatcacagatcattcacctgtggtatttcaga
ttaaaatatgttaatataaagacaggttggcatatactactaatctaatt
aaactgttctgaaaccatttgatgaccctgtacttttagatttctcacat
accctagggaaacttcctattttatttgcattataattgaagaaatttgt
ttaattacctttccttacaaacctagttggtgattttattataatcatac
attttaaagaaactctagaacatgttaggaaagagagactttgctcaaat
atttatattacagcagagttaccactgaaagcttagactgagagtgctca
cggtttgtctctcacttgttgttaatactttttctatagtctatgttatg
tttatcagggcaagcattcagagcattgatctttcatttcttaattttgg
tattgttttagctttgtactacttcctgcactggaagcagaaaagcagct
tatggagatgctgcagtctgtgttcgtacgcattttaccactttctgcac
accggtttacttttgcaatctcagtagatagagatgatcatgaatcagcc
tgtttcttttatgctttttgttaatgaacaaaggggcattggaagaacag
gtgaagagactgttgttggaactgcagcctgcccagtgctgagaccattg
ctcactttgtctttgggaatcaactgaaaactcaatagtacttgtgaaag
aaaataaaacttgagacctgtgattcatgtaatttatgtcaatagcccaa
gagttgtttgtgagctttgaaactggggctgagaacaatagcagacagcc
cgctgtaagacattctgagctgcttg

gaattcactttggaatctgaagaatacaggccctgtccaagtcctgtttg
tgtggcaagaacaagcccatttgggatgtgtacatttactcaagtcattt
gtttaccaggataattgacagcataaaaattgtatttttgttatttttag
atcagtctttccttgcatcttctaactgaaacctgatggtctccatttat
actaaaattcctctgtagagttcccaatacttctaaataaaaaataatgt
caacaaaaccccagagatccaaaatagcaacaataacaacaaaaaactca
cagataatgattgctgtagacacactattaaaaacaaactccaaagatca
aaagccataaacactctacattctactctcatatccttccaaatgaagat
ttacagttgtcaactgctaatgaaaacattaatggtaattcacatttttt
aaaaaaatcagatttggcagatacaagagttactgattaaactttatctc
caataatctataataacagcattctgctataatcataactccattgttga
gctaaggattgttctctcaagacaaagcataatggaaagcaatcacatgg
cctagttgatgagttggctatagaaaagatgcagatttgtttttgctgat
caaaatatcagtcaaacagtattgtatagagcttatgcatactgattact
attgaaagttcaataaatttcttcatatattaaattttaacaatgtttgt
aatgacttgagtgggtttatatgaaaagatcaataattagattcaaatat
gattatgtctaattcttataatttctcaattgggacaataatagcagtta
ttaaaattatgtattctccataattaagataagaattttattcatttttt
atttctgatatattcaaataaattattgtataactctgatttgtatagct
cgtttatgctagctttagcttgcagtcttcaggaggaatataggttttaa
atagggaggatgtttttctttggagaaaattggaactaatgaccaatgat
ttattttggatattggaaattatgttttattatttcccattttttagtgg
aaaatataattatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_96931735_96932866
seq2: B6Ng01-305J12.b_46_1171

seq1  GAATTCTTAGCTTTTCCATCCTTCTTAAATTGTTTTATGAATGTGATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGCTTTTCCATCCTTCTTAAATTGTTTTATGAATGTGATATT  50

seq1  TATAATTATTCATATAAAAGTAGCTACTACATTAAAATGCATAAGTCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTATTCATATAAAAGTAGCTACTACATTAAAATGCATAAGTCTAA  100

seq1  GCAAAATAGCTCACGAAAGAAACTTGTGATTTGTTTGCACAGCTCAGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATAGCTCACGAAAGAAACTTGTGATTTGTTTGCACAGCTCAGAAC  150

seq1  ACAACTGTACATCCAAACAAATCAAGTATTTTCTACCATAATTTGAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGTACATCCAAACAAATCAAGTATTTTCTACCATAATTTGAATTT  200

seq1  GCAATAAATAAACATTGAAACTCACTTCATGTATATCAGATTGTTATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAAATAAACATTGAAACTCACTTCATGTATATCAGATTGTTATTCA  250

seq1  ACTATTTGCCTTAAATCCAATCACAGATCATTCACCTGTGGTATTTCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTGCCTTAAATCCAATCACAGATCATTCACCTGTGGTATTTCAGA  300

seq1  TTAAAATATGTTAATATAAAGACAGGTTGGCATATACTACTAATCTAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATATGTTAATATAAAGACAGGTTGGCATATACTACTAATCTAATT  350

seq1  AAACTGTTCTGAAACCATTTGATGACCCTGTACTTTTAGATTTCTCACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTTCTGAAACCATTTGATGACCCTGTACTTTTAGATTTCTCACAT  400

seq1  ACCCTAGGGAAACTTCCTATTTTATTTGCATTATAATTGAAGAAATTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAGGGAAACTTCCTATTTTATTTGCATTATAATTGAAGAAATTTGT  450

seq1  TTAATTACCTTTCCTTACAAACCTAGTTGGTGATTTTATTATAATCATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTACCTTTCCTTACAAACCTAGTTGGTGATTTTATTATAATCATAC  500

seq1  ATTTTAAAGAAACTCTAGAACATGTTAGGAAAGAGAGACTTTGCTCAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAGAAACTCTAGAACATGTTAGGAAAGAGAGACTTTGCTCAAAT  550

seq1  ATTTATATTACAGCAGAGTTACCACTGAAAGCTTAGACTGAGAGTGCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATTACAGCAGAGTTACCACTGAAAGCTTAGACTGAGAGTGCTCA  600

seq1  CGGTTTGTCTCTCACTTGTTGTTAATACTTTTTCTATAGTCTATGTTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTTGTCTCTCACTTGTTGTTAATACTTTTTCTATAGTCTATGTTATG  650

seq1  TTTATCAGGGCAAGCATTCAGAGCATTGATCTTTCATTTCTTAATTTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCAGGGCAAGCATTCAGAGCATTGATCTTTCATTTCTTAATTTTGG  700

seq1  TATTGTTTTAGCTTTGTACTACTTCCTGCACTGGAAGCAGAAAAGCAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTTTAGCTTTGTACTACTTCCTGCACTGGAAGCAGAAAAGCAGCT  750

seq1  TATGGAGATGCTGCAGTCTGTGTTCGTACGCATTTTACCACTTTCTGCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGATGCTGCAGTCTGTGTTCGTACGCATTTTACCACTTTCTGCAC  800

seq1  ACCGGTTTACTTTTGCAATCTCAGTAGATAGAGATGATCATGAATCAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGTTTACTTTTGCAATCTCAGTAGATAGAGATGATCATGAATCAGCC  850

seq1  TGTTTCTTTTATGCTTTTTGTTAATGAAC-AAGGGGCATTGGAAGAACAG  899
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGTTTCTTTTATGCTTTTTGTTAATGAACAAAGGGGCATTGGAAGAACAG  900

seq1  GTGAAGAGACTGTTGTTGGAACTGCAGCCTGCCCAGTGCTGAGACCATTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGAGACTGTTGTTGGAACTGCAGCCTGCCCAGTGCTGAGACCATTG  950

seq1  CTCACTTTGTCTTTGGGAATCAACTGAAAACTCAATAGTACTTGTGAAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTTGTCTTTGGGAATCAACTGAAAACTCAATAGTACTTGTGAAAG  1000

seq1  AAAATAAAACTTGAGACCTGTGATTCATGTAATTTATGTCAAATAGCCCA  1049
      |||||||||||||||||||||||||||||||||||||||| |||||||| 
seq2  AAAATAAAACTTGAGACCTGTGATTCATGTAATTTATGTC-AATAGCCC-  1048

seq1  AAGAGTTGTTTGTGAGCTTTGAAACCTGGGGCTGAGAAC-ATAGCAGAAC  1098
      |||||||||||||||||||||||| |||||||||||||| ||||||| ||
seq2  AAGAGTTGTTTGTGAGCTTTGAAA-CTGGGGCTGAGAACAATAGCAG-AC  1096

seq1  AGGCCCGCTGTTAAGACATTCTTGAGGCTGCTTG  1132
      | |||||||| |||||||||| ||| ||||||||
seq2  A-GCCCGCTG-TAAGACATTC-TGA-GCTGCTTG  1126


seq1: chr1_97087919_97089019
seq2: B6Ng01-305J12.g_68_1183 (reverse)

seq1  AAAATAA-TATATTTT-CACTAAAAA--TGGAAATA--TAAACATA--TT  42
      ||||||| |||||||| |||||||||   |||||||   |||||||  ||
seq2  AAAATAATTATATTTTCCACTAAAAAATGGGAAATAATAAAACATAATTT  50

seq1  TCAATATCAAAATAAAATCATTGGTCATTAGTT-CAATTTTCT-CAAAG-  89
       ||||||| |||  ||||||||||||||||||| ||||||||| ||||| 
seq2  CCAATATCCAAAATAAATCATTGGTCATTAGTTCCAATTTTCTCCAAAGA  100

seq1  AAAACAT-CTTCCTATTTAAAACTATTATTCCT-CTGAAGACTGCAAGCT  137
      ||||||| || ||||||||||||   ||||||| ||||||||||||||||
seq2  AAAACATCCTCCCTATTTAAAACCTATATTCCTCCTGAAGACTGCAAGCT  150

seq1  AAAGCTAGCATAAACGAGCTATACAAATCAGAGTTATACAATAATTTATT  187
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAGCATAAACGAGCTATACAAATCAGAGTTATACAATAATTTATT  200

seq1  TGAATATATCAGAAAT-AAAAATGAATAAAATTCTTATCTTAATTATGGA  236
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGAATATATCAGAAATAAAAAATGAATAAAATTCTTATCTTAATTATGGA  250

seq1  GAATACATAATTTTAATAACTGCTATTATTGT-CCAATTGAGAAATTATA  285
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAATACATAATTTTAATAACTGCTATTATTGTCCCAATTGAGAAATTATA  300

seq1  AGAATTAGACATAATCATATTTGAATCTAATTATTGATCTTTTCATATAA  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAGACATAATCATATTTGAATCTAATTATTGATCTTTTCATATAA  350

seq1  ACCCACTCAAGTCATTACAAACATTGTTAAAATTTAATATATGAAGAAAT  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTCAAGTCATTACAAACATTGTTAAAATTTAATATATGAAGAAAT  400

seq1  TTATTGAACTTTCAATAGTAATCAGTATGCATAAGCTCTATACAATACTG  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGAACTTTCAATAGTAATCAGTATGCATAAGCTCTATACAATACTG  450

seq1  TTTGACTGATATTTTGATCAGCAAAAACAAATCTGCATCTTTTCTATAGC  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTGATATTTTGATCAGCAAAAACAAATCTGCATCTTTTCTATAGC  500

seq1  CAACTCATCAACTAGGCCATGTGATTGCTTTCCATTATGCTTTGTCTTGA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCATCAACTAGGCCATGTGATTGCTTTCCATTATGCTTTGTCTTGA  550

seq1  GAGAACAATCCTTAGCTCAACAATGGAGTTATGATTATAGCAGAATGCTG  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAATCCTTAGCTCAACAATGGAGTTATGATTATAGCAGAATGCTG  600

seq1  TTATTATAGATTATTGGAGATAAAGTTTAATCAGTAACTCTTGTATCTGC  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATAGATTATTGGAGATAAAGTTTAATCAGTAACTCTTGTATCTGC  650

seq1  CAAATCTGATTTTTTTAAAAAATGTGAATTACCATTAATGTTTTCATTAG  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTGATTTTTTTAAAAAATGTGAATTACCATTAATGTTTTCATTAG  700

seq1  CAGTTGACAACTGTAAATCTTCATTTGGAAGGATATGAGAGTAGAATGTA  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGACAACTGTAAATCTTCATTTGGAAGGATATGAGAGTAGAATGTA  750

seq1  GAGTGTTTATGGCTTTTGATCTTTGGAGTTTGTTTTTAATAGTGTGTCTA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTTATGGCTTTTGATCTTTGGAGTTTGTTTTTAATAGTGTGTCTA  800

seq1  CAGCAATCATTATCTGTGAGTTTTTTGTTGTTATTGTTGCTATTTTGGAT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATCATTATCTGTGAGTTTTTTGTTGTTATTGTTGCTATTTTGGAT  850

seq1  CTCTGGGGTTTTGTTGACATTATTTTTTATTTAGAAGTATTGGGAACTCT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGGTTTTGTTGACATTATTTTTTATTTAGAAGTATTGGGAACTCT  900

seq1  ACAGAGGAATTTTAGTATAAATGGAGACCATCAGGTTTCAGTTAGAAGAT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGAATTTTAGTATAAATGGAGACCATCAGGTTTCAGTTAGAAGAT  950

seq1  GCAAGGAAAGACTGATCTAAAAATAACAAAAATACAATTTTTATGCTGTC  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGAAAGACTGATCTAAAAATAACAAAAATACAATTTTTATGCTGTC  1000

seq1  AATTATCCTGGTAAACAAATGACTTGAGTAAATGTACACATCCCAAATGG  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATCCTGGTAAACAAATGACTTGAGTAAATGTACACATCCCAAATGG  1050

seq1  GCTTGTTCTTGCCACACAAACAGGACTTGGACAGGGCCTGTATTCTTCAG  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTCTTGCCACACAAACAGGACTTGGACAGGGCCTGTATTCTTCAG  1100

seq1  ATTCCAAAGTGAATTC  1101
      ||||||||||||||||
seq2  ATTCCAAAGTGAATTC  1116


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