BAC Information

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BAC

Clone NameB6Ng01-305P02
Chromosome1 (Build37)4 (Build37)
Map Location 38,084,772 - 38,084,936143,726,636 - 143,727,676
singlet/doubletsingletsinglet
Overlap geneEif5b
Upstream geneA230074B11Rik, 4921511C04Rik, Cnga3, Inpp4a, 6330578E17Rik, Unc50, Mgat4a, 2010300C02Rik, Tsga10, EG623661, Mitd1, Mrpl30, Gm776, 2300002O18Rik, Txndc9, EG666434
Downstream geneRev1, EG329123, Aff3, Lonrf2, Chst10, EG625775, Nms, Pdcl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305P02.bB6Ng01-305P02.g
ACCGA099106GA099107
length1,0211,061
definitionB6Ng01-305P02.b B6Ng01-305P02.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(38,084,772 - 38,084,936)(143,726,636 - 143,727,676)
sequence
gaattcaccgggcgtggtggcccacgcctttagtcccagcacttgggaag
cagaggcaggtggatttctgagttcgaggccagcctggtctacagagtga
gttccaggacagccagggctacacagagaaaccctgtcttgaaaaccaac
agcaacaaaaaaaattaggaattcttatagatcatcattaagaattaaca
agttggggctggagagatggcttagcggttaagagcactgactgttcttc
caaaggttcagagttcaatccccagcaaccacatggtggctcaccctctc
tagtggggatctgatgccctcttctggtgtgtctgaagacagcaatagtg
tagtcacatatatgaaataaataaatcttaaaaaaagaattaacaagtca
tctatttgtctatatagcatcactacaagacagtatatcttcatagatct
gtagagatctgctccaaaggggtggactaatacctagtgattgttatata
tgtttaataagaacaggaaaagcatattaagagcaggaatcttccataaa
atgatttcttctaggtcttgtccattggatcaaatccaatggcttataat
tcgaagcagacctcatctggggaagattacctgctagttattagcttatc
ctatgatggctcctgacacatactggtacaaacaccctggatatcaatct
ggccattccttagaaaactggaaatagttctacttgaggacccagctata
ccactgttgggcatatccccagaaaatgttccacaataccacaaggacag
gtgctctactgtgttcatagcagcctttgctcattatagccagagactgg
aaacaacgcagatgtccctcaactgaagaaaagatacagaaaatgtggtt
catttacacaatgggattctatacagctattaaaaatcaaggacatcatg
aatcttgcaagcaatggatataactgggaaatatcatcctgagtgagtta
cccagacctagaagcatgtgc
gaattccaggacagccagggctatacagagaaaccctgtctcaaaaaaac
aaaaaacaaaaaataaaacaaaaataatgtgagtgcaaaattgatggaat
ggggaatccaagtccttcacaaaccaaggcagaagaattgccatgggaaa
tagagtaagaatccacttaaaatgaacacaacaagtggcaggagatttgg
ctcaggagttaatagcactgaatccttttccagaactcatgagttcaatt
cctagcaatcatattgtagctcaccaccatcaataatgggatcacaagtc
ctcggctgaagagagcaacagtgtatttacatatgaaataaataatcaaa
tctttaacactatatatatctatatatgcatatagatatatatatattca
gctgataaaattggccatattaataaaggagatgaggttctgaaggtgtg
aagaagagcacttggcagtatttcctcacccactcaggttcttctcaatt
taaatttacttctcagttagaagttcttcagagtattttacattcttgta
ttcctgaaaaagaccatcatgatctgggtgctatcagaccctccaagtca
taaagcaggacatgcacagcagcagtctattatcaaatggaagtgacata
tatgtgattgggccaaacaagtcctgaaggcacaagtatgttacaagaag
tagttgctcaaatgcctatggtttctactcctgttacagtgccatcagct
accaagcatgtacctatagccttatgggctgttccctatgatcagctgac
tgaagaagacaagactaggacctgattctctaatgtctctgcacgctatg
cagtcaccatccagaagtgcacagctgcagcattacaactgcttttcccg
ggacaaccctgaaagacacaggtgaaaggaattatttacagtgggcagaa
attcccagcagtacacatagtattaacagtttgtttggaagaagaaattg
ggcaatgtacaatatttactgattcatgggcttatacaaatgatgctgta
tagtcagggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_38084772_38084936
seq2: B6Ng01-305P02.b_47_210 (reverse)

seq1  -TTTTTTTTTTG-----GTTTTTCGAGACAGGGTTTCTCTGTGTAGCCAT  44
       ||||||| |||     | ||||| ||||||||||||||||||||||| |
seq2  TTTTTTTTGTTGCTGTTGGTTTTCAAGACAGGGTTTCTCTGTGTAGCCCT  50

seq1  GACTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAA  94
      | ||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAA  100

seq1  TCCACCTGCCTCTGTCTCCCGAGTGCTGGGACTAAAGGCGTGCGCCACCA  144
      ||||||||||||||  |||| ||||||||||||||||||||| |||||||
seq2  TCCACCTGCCTCTGCTTCCCAAGTGCTGGGACTAAAGGCGTGGGCCACCA  150

seq1  CGCCCGGCTCTTTGTGAATTC  165
      ||||||       ||||||||
seq2  CGCCCG-------GTGAATTC  164

seq1: chr4_143726636_143727676
seq2: B6Ng01-305P02.g_88_1128 (reverse)

seq1  ATCCCTGACTATACAGCCAATCCTTTGGTTATAGCCCCTGAATCAGTAAA  50
      |||||||||||||||||  ||| ||||  || ||||| ||||||||||||
seq2  ATCCCTGACTATACAGC--ATCATTTGTATA-AGCCCATGAATCAGTAAA  47

seq1  TAATTGTACATTTGCCCATTTCTTCTTCCAAACAAACTG-TAATACTATG  99
      | ||||||||||  || |||||||||||||||||||||| ||||||||||
seq2  T-ATTGTACATTGCCCAATTTCTTCTTCCAAACAAACTGTTAATACTATG  96

seq1  TGTACTGCT-GGAATTTCTGCCCACTGTAAATAATTTCCTTCACCTGTGT  148
      ||||||||| |||||||||||||||||||||||||| | |||||||||||
seq2  TGTACTGCTGGGAATTTCTGCCCACTGTAAATAATTCCTTTCACCTGTGT  146

seq1  CTTTCAGGGTTGTCCCGG--AAAGCAGTTGTAATGCTGCAGCTGTGCACT  196
      ||||||||||||||||||  ||||||||||||||||||||||||||||||
seq2  CTTTCAGGGTTGTCCCGGGAAAAGCAGTTGTAATGCTGCAGCTGTGCACT  196

seq1  TCTGGATGGTGACTGCATAGCGTGCAGAGACATTAGAGAATCAGGTCCTA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATGGTGACTGCATAGCGTGCAGAGACATTAGAGAATCAGGTCCTA  246

seq1  GTCTTGTCTTCTTCAGTCAGCTGATCATAGGGAACAGCCCATAAGGCTAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGTCTTCTTCAGTCAGCTGATCATAGGGAACAGCCCATAAGGCTAT  296

seq1  AGGTACATGCTTGGTAGCTGATGGCACTGTAACAGGAGTAGAAACCATAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACATGCTTGGTAGCTGATGGCACTGTAACAGGAGTAGAAACCATAG  346

seq1  GCATTTGAGCAACTACTTCTTGTAACATACTTGTGCCTTCAGGACTTGTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGAGCAACTACTTCTTGTAACATACTTGTGCCTTCAGGACTTGTT  396

seq1  TGGCCCAATCACATATATGTCACTTCCATTTGATAATAGACTGCTGCTGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCAATCACATATATGTCACTTCCATTTGATAATAGACTGCTGCTGT  446

seq1  GCATGTCCTGCTTTATGACTTGGAGGGTCTGATAGCACCCAGATCATGAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTCCTGCTTTATGACTTGGAGGGTCTGATAGCACCCAGATCATGAT  496

seq1  GGTCTTTTTCAGGAATACAAGAATGTAAAATACTCTGAAGAACTTCTAAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTTTTCAGGAATACAAGAATGTAAAATACTCTGAAGAACTTCTAAC  546

seq1  TGAGAAGTAAATTTAAATTGAGAAGAACCTGAGTGGGTGAGGAAATACTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGTAAATTTAAATTGAGAAGAACCTGAGTGGGTGAGGAAATACTG  596

seq1  CCAAGTGCTCTTCTTCACACCTTCAGAACCTCATCTCCTTTATTAATATG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGCTCTTCTTCACACCTTCAGAACCTCATCTCCTTTATTAATATG  646

seq1  GCCAATTTTATCAGCTGAATATATATATATCTATATGCATATATAGATAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATTTTATCAGCTGAATATATATATATCTATATGCATATATAGATAT  696

seq1  ATATAGTGTTAAAGATTTGATTATTTATTTCATATGTAAATACACTGTTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTGTTAAAGATTTGATTATTTATTTCATATGTAAATACACTGTTG  746

seq1  CTCTCTTCAGCCGAGGACTTGTGATCCCATTATTGATGGTGGTGAGCTAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTCAGCCGAGGACTTGTGATCCCATTATTGATGGTGGTGAGCTAC  796

seq1  AATATGATTGCTAGGAATTGAACTCATGAGTTCTGGAAAAGGATTCAGTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGATTGCTAGGAATTGAACTCATGAGTTCTGGAAAAGGATTCAGTG  846

seq1  CTATTAACTCCTGAGCCAAATCTCCTGCCACTTGTTGTGTTCATTTTAAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAACTCCTGAGCCAAATCTCCTGCCACTTGTTGTGTTCATTTTAAG  896

seq1  TGGATTCTTACTCTATTTCCCATGGCAATTCTTCTGCCTTGGTTTGTGAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTCTTACTCTATTTCCCATGGCAATTCTTCTGCCTTGGTTTGTGAA  946

seq1  GGACTTGGATTCCCCATTCCATCAATTTTGCACTCACATTATTTTTGTTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTGGATTCCCCATTCCATCAATTTTGCACTCACATTATTTTTGTTT  996

seq1  TATTTTTTGTTTTTTGTTTTTTTGAGACAGGGTTTCTCTGTATAG  1041
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTGTTTTTTGTTTTTTTGAGACAGGGTTTCTCTGTATAG  1041