MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-308F03
Chromosome	1 (Build37)
Map Location	39,546,021 - 39,546,357
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Aff3, Lonrf2, Chst10, EG625775, Nms, Pdcl3, Npas2, LOC100041999, Rpl31, Tbc1d8
Downstream gene	D1Bwg0212e, Rnf149, EG329126, Creg2, 4933400N17Rik, LOC100042065, Map4k4, Il1r2, Il1r1, Il1rl2, Il1rl1, Il18r1
Link	Open Mouse BAC browser

Click to get alignment info.

name	Aff3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16764 MGI:106927
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 99 ESTs, 2 Proteins

name	Lonrf2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381338 MGI:1920209
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Chst10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:98388 MGI:2138283
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG625775 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:625775 MGI:3647848
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 13 Proteins pseudo : _no_value

name	Nms (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:433292 MGI:3583618
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pdcl3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68833 MGI:1916083
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Npas2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18143 MGI:109232
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041999 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041999
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 43 ESTs, 2 Proteins

name	Rpl31 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:114641 MGI:2149632
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tbc1d8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:54610 MGI:1927225
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	D1Bwg0212e (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:52846 MGI:106580
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rnf149 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67702 MGI:2677438
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG329126 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:329126 MGI:3644919
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 9 Proteins pseudo : _no_value

name	Creg2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:263764 MGI:1928333
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4933400N17Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:619289 MGI:3588206
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 13 ESTs

name	LOC100042065 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042065
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs

name	Map4k4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26921 MGI:1349394
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Il1r2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16178 MGI:96546
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Il1r1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16177 MGI:96545
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Il1rl2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:107527 MGI:1913107
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Il1rl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17082 MGI:98427
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Il18r1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16182 MGI:105383
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Aff3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149233821 GeneID:16764 MGI:106927
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 99 ESTs, 2 Proteins product : AF4/FMR2 family, member 3 transcript_id : XM_001477293.1

name	Lonrf2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71274157 GeneID:381338 MGI:1920209
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : LON peptidase N-terminal domain and ring finger 2 transcript_id : NM_001029878.1

name	Chst10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70908367 GeneID:98388 MGI:2138283
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : carbohydrate sulfotransferase 10 transcript_id : NM_145142.2

name	Nms (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:58652150 GeneID:433292 MGI:3583618
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : neuromedin S transcript_id : NM_001011684.1

name	Pdcl3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142382228 GeneID:68833 MGI:1916083
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosducin-like 3 transcript_id : NM_026850.3

name	Npas2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6679101 GeneID:18143 MGI:109232
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : neuronal PAS domain protein 2 transcript_id : NM_008719.1

name	LOC100041999 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149233827 GeneID:100041999
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 43 ESTs, 2 Proteins product : similar to Ribosomal protein L17 transcript_id : XM_001477395.1

name	Rpl31 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142347404 GeneID:114641 MGI:2149632
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ribosomal protein L31 transcript_id : NM_053257.2

name	Tbc1d8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142379940 GeneID:54610 MGI:1927225
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : TBC1 domain family, member 8 transcript_id : NM_018775.3

name	D1Bwg0212e (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31542465 GeneID:52846 MGI:106580
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DNA segment, Chr 1, Brigham & Women's Genetics 0212 expressed transcript_id : NM_028043.2

name	Rnf149 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142376002 GeneID:67702 MGI:2677438
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ring finger protein 149 transcript_id : NM_001033135.2

name	Creg2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:76096370 GeneID:263764 MGI:1928333
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cellular repressor of E1A-stimulated genes 2 transcript_id : NM_170597.4

name	4933400N17Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94363319 GeneID:619289 MGI:3588206
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 13 ESTs product : RIKEN cDNA 4933400N17 gene transcript_id : XM_890488.2

name	LOC100042065 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149233831 GeneID:100042065
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs product : hypothetical protein LOC100042065 transcript_id : XM_001477599.1

name	Map4k4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6679059 GeneID:26921 MGI:1349394
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitogen-activated protein kinase kinase kinase kinase 4 transcript_id : NM_008696.1

name	Il1r2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:76253864 GeneID:16178 MGI:96546
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : interleukin 1 receptor, type II transcript_id : NM_010555.4

name	Il1r1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130781 GeneID:16177 MGI:96545
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : interleukin 1 receptor, type I transcript_id : NM_008362.2

name	Il1rl2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142381439 GeneID:107527 MGI:1913107
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : interleukin 1 receptor-like 2 transcript_id : NM_133193.2

name	Il1rl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7106346 GeneID:17082 MGI:98427
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : interleukin 1 receptor-like 1 transcript_id : NM_010743.1

name	Il1rl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71037394 GeneID:17082 MGI:98427
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : interleukin 1 receptor-like 1 transcript_id : NM_001025602.1

name	Il18r1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6680422 GeneID:16182 MGI:105383
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : interleukin 18 receptor 1 transcript_id : NM_008365.1

name	Aff3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149233822 GeneID:16764 MGI:106927
definition	codon_start : 1 product : similar to AF4/FMR2 family member 3 (Protein LAF-4) (Lymphoid nuclear protein related to AF4) protein_id : XP_001477343.1

name	Lonrf2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71274158 CCDS:CCDS14900.1 GeneID:381338 MGI:1920209
definition	GO_function : GO:0009055 - electron carrier activity [Evidence IEA]; GO:0015035 - protein disulfide oxidoreductase activity [Evidence IEA] codon_start : 1 product : LON peptidase N-terminal domain and ring finger 2 protein_id : NP_001025049.1

name	Chst10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70908368 CCDS:CCDS14901.1 GeneID:98388 MGI:2138283
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008146 - sulfotransferase activity [Evidence IMP]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0007612 - learning [Evidence IMP]; GO:0007616 - long-term memory [Evidence IMP] codon_start : 1 note : HNK-1 sulfotransferase product : carbohydrate sulfotransferase 10 protein_id : NP_660124.2

name	Nms (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58652151 CCDS:CCDS14902.1 GeneID:433292 MGI:3583618
definition	GO_function : GO:0001664 - G-protein-coupled receptor binding [Evidence ISS] GO_process : GO:0045475 - locomotor rhythm [Evidence ISS]; GO:0007218 - neuropeptide signaling pathway [Evidence ISS]; GO:0006940 - regulation of smooth muscle contraction [Evidence IEA] codon_start : 1 product : neuromedin S protein_id : NP_001011684.1

name	Pdcl3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560120 CCDS:CCDS14903.1 GeneID:68833 MGI:1916083
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS] GO_function : GO:0005515 - protein binding [Evidence ISS] GO_process : GO:0006915 - apoptosis [Evidence IEA] codon_start : 1 note : IAP-associated factor VIAF1 product : phosducin-like 3 protein_id : NP_081126.2

name	Npas2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679102 GeneID:18143 MGI:109232
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence IEA]; GO:0000155 - two-component sensor activity [Evidence IEA] GO_process : GO:0042745 - circadian sleep/wake cycle [Evidence IMP]; GO:0045475 - locomotor rhythm [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]; GO:0000160 - two-component signal transduction system (phosphorelay) [Evidence IEA] codon_start : 1 exception : mismatches in translation product : neuronal PAS domain protein 2 protein_id : NP_032745.1

name	LOC100041999 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149233828 GeneID:100041999
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477445.1

name	Rpl31 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:16716589 CCDS:CCDS14904.1 GeneID:114641 MGI:2149632
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005622 - intracellular [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO:0005840 - ribosome [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0003735 - structural constituent of ribosome [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006412 - protein biosynthesis [Evidence IEA] codon_start : 1 product : ribosomal protein L31 protein_id : NP_444487.1

name	Tbc1d8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82524296 CCDS:CCDS14905.1 GeneID:54610 MGI:1927225
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005096 - GTPase activator activity [Evidence IEA]; GO:0031072 - heat shock protein binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 exception : mismatches in translation note : BUB2-like protein 1; GRAM domain; vascular Rab-GAP/TBC-containing product : TBC1 domain family, member 8 protein_id : NP_061245.2

name	D1Bwg0212e (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:26553441 CCDS:CCDS14906.1 GeneID:52846 MGI:106580
definition	codon_start : 1 product : hypothetical protein LOC52846 protein_id : NP_082319.1

name	Rnf149 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75677536 CCDS:CCDS14907.1 GeneID:67702 MGI:2677438
definition	GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 exception : mismatches in translation product : ring finger protein 149 protein_id : NP_001028307.1

name	Creg2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:24528565 CCDS:CCDS14908.1 GeneID:263764 MGI:1928333
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IDA]; GO:0005794 - Golgi apparatus [Evidence IDA] codon_start : 1 product : cellular repressor of E1A-stimulated genes 2 protein_id : NP_733485.1

name	4933400N17Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82879020 GeneID:619289 MGI:3588206
definition	codon_start : 1 product : similar to FLJ42986 protein protein_id : XP_895581.1

name	LOC100042065 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149233832 GeneID:100042065
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477649.1

name	Map4k4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679060 GeneID:26921 MGI:1349394
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA] [Evidence IDA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IDA] [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IEA] [Evidence IDA]; GO:0007243 - protein kinase cascade [Evidence IDA]; GO:0006950 - response to stress [Evidence IDA] codon_start : 1 exception : unclassified translation discrepancy note : NCK interacting kinase; HPK/GCK-like kinase product : mitogen-activated protein kinase kinase kinase kinase 4 protein_id : NP_032722.1

name	Il1r2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754330 CCDS:CCDS14909.1 GeneID:16178 MGI:96546
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004907 - interleukin receptor activity [Evidence IEA]; GO:0004908 - interleukin-1 receptor activity [Evidence IEA]; GO:0004910 - interleukin-1, Type II, blocking receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0007166 - cell surface receptor linked signal transduction [Evidence IEA] codon_start : 1 note : IL-1 receptor beta chain product : interleukin 1 receptor, type II protein_id : NP_034685.1

name	Il1r1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680417 GeneID:16177 MGI:96545
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004908 - interleukin-1 receptor activity [Evidence IDA]; GO:0004909 - interleukin-1, Type I, activating receptor activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IDA]; GO:0004888 - transmembrane receptor activity [Evidence IEA] GO_process : GO:0019221 - cytokine and chemokine mediated signaling pathway [Evidence IDA] codon_start : 1 note : IL-1 receptor alpha chain product : interleukin 1 receptor, type I protein_id : NP_032388.1

name	Il1rl2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:18875334 CCDS:CCDS14910.1 GeneID:107527 MGI:1913107
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004907 - interleukin receptor activity [Evidence ISS]; GO:0004908 - interleukin-1 receptor activity [Evidence IEA]; GO:0004909 - interleukin-1, Type I, activating receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004888 - transmembrane receptor activity [Evidence IEA] codon_start : 1 product : interleukin 1 receptor-like 2 protein_id : NP_573456.1

name	Il1rl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71037395 GeneID:17082 MGI:98427
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA] GO_function : GO:0004908 - interleukin-1 receptor activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004888 - transmembrane receptor activity [Evidence IEA] GO_process : GO:0006952 - defense response [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1; lymphocyte antigen 84; T1 product : interleukin 1 receptor-like 1 isoform a protein_id : NP_001020773.1

name	Il1rl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7106347 GeneID:17082 MGI:98427
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA] GO_function : GO:0004908 - interleukin-1 receptor activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004888 - transmembrane receptor activity [Evidence IEA] GO_process : GO:0006952 - defense response [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform b is encoded by transcript variant 2; lymphocyte antigen 84; T1 product : interleukin 1 receptor-like 1 isoform b protein_id : NP_034873.1

name	Il18r1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680423 GeneID:16182 MGI:105383
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004907 - interleukin receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004888 - transmembrane receptor activity [Evidence IEA] GO_process : GO:0007166 - cell surface receptor linked signal transduction [Evidence IEA] codon_start : 1 note : interleukin 1 receptor related protein product : interleukin 18 receptor 1 protein_id : NP_032391.1

name	(CDS detail)
type	STS
link
xref	UniSTS:128679
definition	standard_name : D1Mit321

name	(CDS detail)
type	STS
link
xref	UniSTS:185434
definition	standard_name : AW556253

name	(CDS detail)
type	STS
link
xref	UniSTS:165074
definition	standard_name : AI851349

name	(CDS detail)
type	STS
link
xref	UniSTS:15159
definition	standard_name : D5S1969

name	(CDS detail)
type	STS
link
xref	UniSTS:234113
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:158788
definition	standard_name : AU041319

name	(CDS detail)
type	STS
link
xref	UniSTS:178379
definition	standard_name : AI507003

name	(CDS detail)
type	STS
link
xref	UniSTS:158787
definition	standard_name : 11.MHAa63e11.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:207150
definition	standard_name : RH126785

name	(CDS detail)
type	STS
link
xref	UniSTS:128457
definition	standard_name : D1Mit123

name	(CDS detail)
type	STS
link
xref	UniSTS:144052
definition	standard_name : Npas2

name	(CDS detail)
type	STS
link
xref	UniSTS:234118
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:233030
definition	standard_name : RH143784

name	(CDS detail)
type	STS
link
xref	UniSTS:142228
definition	standard_name : D1Bwg0212e

name	(CDS detail)
type	STS
link
xref	UniSTS:165075
definition	standard_name : AV037261

name	(CDS detail)
type	STS
link
xref	UniSTS:162744
definition	standard_name : RH126032

name	(CDS detail)
type	STS
link
xref	UniSTS:123988
definition	standard_name : 32.MMHAP53FLC5.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:167263
definition	standard_name : D1Ertd259e

name	(CDS detail)
type	STS
link
xref	UniSTS:125393
definition	standard_name : MHAa84g6.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:128554
definition	standard_name : D1Mit212

name	(CDS detail)
type	STS
link
xref	UniSTS:185435
definition	standard_name : BB168363

name	(CDS detail)
type	STS
link
xref	UniSTS:158789
definition	standard_name : AU045934

name	(CDS detail)
type	STS
link
xref	UniSTS:234115
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:234114
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:158786
definition	standard_name : AU043147

name	(CDS detail)
type	STS
link
xref	UniSTS:128678
definition	standard_name : D1Mit320

name	(CDS detail)
type	STS
link
xref	UniSTS:116251
definition	standard_name : D1Mit232

name	(CDS detail)
type	STS
link
xref	UniSTS:119987
definition	standard_name : RH94740

name	(CDS detail)
type	STS
link
xref	UniSTS:124926
definition	standard_name : M20658

name	(CDS detail)
type	STS
link
xref	UniSTS:178382
definition	standard_name : M20658

name	(CDS detail)
type	STS
link
xref	UniSTS:234116
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:178381
definition	standard_name : AW551444

name	(CDS detail)
type	STS
link
xref	UniSTS:158790
definition	standard_name : AI481289

name	(CDS detail)
type	STS
link
xref	UniSTS:234117
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:128456
definition	standard_name : D1Mit122.1

name	(CDS detail)
type	STS
link
xref	UniSTS:128455
definition	standard_name : D866

name	(CDS detail)
type	STS
link
xref	UniSTS:124946
definition	standard_name : M24843

name	(CDS detail)
type	STS
link
xref	UniSTS:178380
definition	standard_name : D13695

name	EG625775 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:94363317 GeneID:625775 MGI:3647848
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 13 Proteins product : predicted gene, EG625775 pseudo : _no_value transcript_id : XR_001877.1

name	EG329126 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:94363318 GeneID:329126 MGI:3644919
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 9 Proteins product : predicted gene, EG329126 pseudo : _no_value transcript_id : XR_001880.1

clone name	MSMg01-475G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-401P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502L02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-237G08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-237F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-178K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-090G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-364J14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436F13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-122I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-118G23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-194E14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-328E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-062E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-415I14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-457I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-359K08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-530A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-458H24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-319O19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-136D11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-324J04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-304L08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279L22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-158A11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-485B05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-177L17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-278L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-458C03
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-522E03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-114G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-377J05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-317I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-517I20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-539P14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453J15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-178I17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-073H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-183F14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-073F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-262P02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-351L23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-304I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290M23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-177A21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-268E23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-519J12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-207O10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-357E12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-102L04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-470F09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-517I23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-191A11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-526G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-440E18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-092F10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-397P07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-126F09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-313D11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-164C13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-513N14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-368G03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070N18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-459I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-173N19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-498N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-425L09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-145E11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-394N14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-421E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-445B04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-404O12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-080K14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-083E13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-369M08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-411M23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-103I16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-297H24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-399C10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-474G22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-451J24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-527M20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-096F05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-067M20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-517B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059J24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-218D01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-247E18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-269E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277G14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231G19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-243C17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-309O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162J07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-252N09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-088D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032D08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-039N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265N15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-173G18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-242B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262M17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180H09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-345N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308F03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-197P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276N16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073A07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-083O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168D15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-073N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210J04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-084K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007M15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-062B06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152N22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015O12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-076B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034O09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-257B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253A24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-130K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250B24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040O10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-134I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084A08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-002K22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-085N12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-038N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165N18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-130O23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140N24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174M18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-209J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-349K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277C22
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-308F03.b	B6Ng01-308F03.g
ACC	GA100853	GA100854
length	1,001	1,146
definition	B6Ng01-308F03.b	B6Ng01-308F03.g
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	gaattctttgtttagctctgagccgcatttttaatgggggtatttgattc tctggagtccaccttcttgagttctttatatatattggatattagtcacc tatctgatttagaattggtaaagatcctttcccaatctgttggtggcctt ttttgtcttattgacagtgtcttttgccttacagaagctttgcaatttta tgaggtcccatttgttgattctcaatcttacagcacaagccattgctgtt ctatccaggaattttacccctgtgcccatatcttcgaggcttttgcaaac tttatcgtccataagtttcactgtctctggttttatgtagaattccttgg tccacttagatttgaccttagtacaaggagataggaatggatcaattccc attcttctacctgataaacaccagttgtgctagcaccatttgttgaaaat gcttttttccactgaatggttttagctcccttgtcaaagatcaagtgacc ataggtgtgtgggtttctttctgggtcttcaattatattccattggtcta cttctctgttgctataccagttccatgcagtttttatcacaattgctctg tggtacagctttaagtcagacatcctgattccaccagaggttcttttatc attgagaagagtatttgctatcctaggatttttgttttttgttttttgtt tttgtttttttgttgttttgtttttttttgttttgtttatttattccaga tgaatttgcaaattgccctttctaattcattaaagaattgagttggaatt ttgatggggattgcattgaatctctagattgcttttggcaagatagccat ttttactatattgatcctgccaattcatgatcatgggagttctttacatc ttctgagatcttcttaatttcttcttcagagacttgaagttcttatcatt cagatctttcacttccttagttagagtcaagtcaaggtattttgtattat t	gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc atatatccagaagaagccccaactggtaagaaggacacatgctccactat gttcatagcagccttatttataatagccagaaactggaaagaacccagat gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc taggatacccacgatataagatacaatttcctaaacacatgaaactcaag aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa caaaacacccatggaaggagttacagaaacaaagtttggagctgagatga aaggatggaccatgtagagactgccatatccagggatccaccccataatc agcatccaaacgctgacaccattgcatatactagcaagattttatcgaaa ggacccagatgtagctgtcctcttgtgagactatgccggggcctagcaaa cacagaagtggatgctcacagtcagctaatggatggatcacagggctccc aatggaggagctagagaaagtacccaggagctaaagggatcttcacctat aggtggaacacatatgactacagtaccctgagctctgactctagctgcat atgtatccaagatgtctagtcgccatcctgaagagagcccatgacacgcg actggtgccgtcaggaacgccagggctaaggggggagaaattgggt
quality values	Open. Hide. 47 17 21 25 58 58 58 62 62 49 62 62 42 41 47 62 62 62 62 62 37 51 62 62 62 62 62 62 62 62 26 30 24 22 22 45 28 32 34 33 34 36 38 43 50 62 59 59 62 62 62 62 62 62 62 59 62 62 62 62 59 62 62 62 62 62 62 54 54 54 42 54 62 59 51 56 46 50 48 50 59 59 59 62 62 62 62 62 59 62 62 62 62 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 54 62 62 62 62 62 59 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 59 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 54 62 59 62 54 49 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 59 56 54 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 56 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 56 43 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 59 62 62 62 62 49 62 62 62 62 59 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 62 62 62 46 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 46 62 54 58 58 58 54 58 58 58 58 52 58 58 58 58 58 58 58 58 58 45 58 58 58 58 46 58 58 58 54 58 58 58 58 58 58 58 58 54 58 58 58 58 54 58 58 58 54 58 58 58 58 58 58 40 58 58 58 58 58 58 58 58 58 58 54 58 58 54 58 58 58 58 58 58 58 58 58 58 58 51 58 58 51 53 53 49 52 58 58 58 54 50 58 50 58 53 51 50 58 52 52 58 58 58 58 58 58 50 54 58 44 39 50 51 50 39 44 29 58 34 51 54 49 58 58 53 52 53 53 46 49 58 53 58 39 58 54 30 58 39 52 39 35 58 58 49 58 47 50 42 54 58 50 50 29 58 35 19 58 58 58 58 58 42 58 58 51 51 51 58 50 51 58 54 51 58 58 29 58 54 54 54 54 40 54 54 54 54 50 35 46 36 51 54 29 49 49 44 54 34 53 54 54 54 54 46 42 15 18 22 40 42 20 33 14 49 46 54 54 54 35 54 26 28 33 38 28 32 53 32 39 54 30 33 54 49 37 40 30 54 41 37 46 31 20 54 54 37 54 37 45 28 28 53 31 41 32 37 53 24 31 53 39 32 53 32 24 40 45 53 31 35 45 42 45 30 32 31 53 53 42 40 45 29 51 49 24 33 31 11 16 31 27 29 30 30 43 31 44 31 41 37 37 31 32 31 37 25 25 41 34 29 46 46 29 23 29 26 19 41 28 45 33 31 32 42 26 23 31 46 48 46 43 31 32 31 31 32 30 34 31 31 22 31 27 32 31 42 28 22 9 17 34 27 31 13 14 43 32 32 31 30 32 41 46 39 31 13 28 31 42 33 48 46 23 30 13 21 36 25 17 29 24 34 36 22 41 31 22 9 33 29 32 17 17 16 31 36 32 13 11 15 32 30 29 21 11 16 32 16 33 19 31 31 32 30 30 31 28 25 38 19 12 37 30 18 25 24 19 21 20 19 27 16 33 38 48 8 8 18 31 31 31 20 11 13 23 32 10 14 26 32 33 33 23 19 28 23 14 32 34 32 12 14 20 26 12 22 34 32 39 19 30 5 4 5 32 20 27 37	Open. Hide. 62 44 51 44 62 62 62 47 59 62 24 25 19 15 10 25 21 23 21 30 22 27 27 29 50 59 62 62 59 59 51 59 49 59 62 59 62 62 59 62 62 62 54 62 62 62 62 62 59 62 62 62 59 62 56 59 51 56 56 59 62 62 59 59 56 54 56 59 59 59 59 54 42 54 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 59 49 59 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 59 54 33 54 59 62 62 62 62 62 62 59 59 62 51 59 62 59 62 62 49 54 62 62 62 62 59 59 62 62 62 59 62 62 62 59 51 46 59 59 62 62 62 62 62 62 59 59 59 62 54 59 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 54 54 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 49 54 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 54 62 62 62 54 62 62 47 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 46 52 58 58 58 58 58 58 54 58 58 45 54 58 58 58 58 49 42 54 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 54 58 54 58 58 58 54 58 58 58 58 58 54 58 54 54 58 44 58 58 54 58 58 58 54 54 54 58 58 58 58 58 58 58 58 58 58 58 58 52 58 58 58 51 58 58 58 52 58 58 58 58 40 49 58 58 58 51 58 58 49 47 51 58 53 53 58 58 58 38 58 38 34 51 49 58 58 49 58 51 58 46 52 58 53 58 50 51 50 51 51 50 51 58 58 51 54 58 50 52 58 58 53 50 50 50 58 58 58 58 44 40 58 52 40 46 50 58 58 58 58 40 38 49 44 49 50 41 30 54 58 58 51 42 53 58 53 58 43 46 35 35 46 46 52 51 51 51 38 49 54 49 40 46 44 54 40 34 53 51 42 39 51 54 54 49 40 40 40 49 42 52 53 45 44 54 54 39 40 44 44 40 47 25 42 35 35 33 33 30 41 37 38 49 54 30 53 29 54 52 42 53 54 51 51 39 54 29 47 51 34 47 23 39 31 32 53 52 41 28 53 33 28 47 40 22 20 52 32 31 35 32 43 32 53 34 25 32 36 53 29 45 31 35 37 39 40 30 35 36 51 44 18 29 21 31 28 31 51 51 31 31 43 31 34 30 35 31 31 32 39 39 31 31 31 48 30 32 31 31 42 30 43 23 28 31 42 32 37 37 36 31 31 42 31 42 26 31 36 36 29 42 31 32 32 22 18 48 48 39 27 30 31 26 32 46 32 31 31 31 19 41 36 31 24 42 30 30 25 30 30 28 42 31 26 10 13 27 31 31 28 31 24 21 31 17 38 18 31 25 30 24 32 36 28 44 48 15 5 11 27 37 12 22 32 48 31 31 24 24 26 21 30 31 20 32 32 22 15 19 31 21 21 33 27 31 26 33 31 34 27 32 32 37 17 16 14 23 25 17 18 18 19 15 31 23 26 29 13 17 32 22 19 16 23 40 30 7 19 9 21 22 4 4 13 19 9 30 19 24 15 29 7 16 30 15 19 15 21 27 40 19 6 3 11 25 17 28 28 20 32 19 13 28 21 7 19 26 11 15 16 27 11 16 9 8 16 14 26 25 18 11 21 19 12 15 30 5 7 25 4 14 16 27 14 14 15 3 4 11 17 15 25 30 24 13 12 12 7 20 15 6 11 13 14 16 20 13 16 11 7 23 21 16 23 8 11 7 6 10 11 16 20 7 4 20 12 4 6 6 3 2 3 11 13 4 3 3 5 3 4 7 23 9 2 1 2 5 2 3 8 8 10 3 3 13 8 6 5 4 6 6 4 8 5 7 1 6 6 3 1 3 4 2 5 5 9 3 5 5 4 5 3 2 8 8 11 14 15 17 28 6 3 2 3 12 10 7 22 23 24 9 9 6 6 6 7 6 6 5 2 2 3

Alignment Information

BAC End 1

BAC End 2

seq1: chr1_39546021_39546357
seq2: B6Ng01-308F03.b_721_787

seq1  TTTTTGTTTTTTGTTTTTAATTTTAAAATTGAGCATACAAAGTATGATTC  50
                                                        
seq2  --------------------------------------------------  0

seq1  GTCATTTGGCTTGTTTGTTTTGAGACAGGGTGTCAGTGAGTAGCCTTGGC  100
                                                        
seq2  --------------------------------------------------  0

seq1  TGAGCTGAACCTTCTTAGGCTGGCTGCTTACTCATAGCTACCTGCTTGCT  150
                                                        
seq2  --------------------------------------------------  0

seq1  TCAGCCTCCCAAGCACTGGGATTAAATACACGCACCACCGCGCCCGGCTG  200
                                                        
seq2  --------------------------------------------------  0

seq1  TCTCGGTTTTTGCTTTTTGGGCAGGGTTTGGGGATTTGGGGTTTTGTTTT  250
                                                        
seq2  --------------------------------------------------  0

seq1  TGTTTTTGTTTTTGTTTTGTTTGTTTGTTTGTTTTTTGAGTTTCTGGCTT  300
              |||||||||  ||||||| |||||||||   |||      ||
seq2  --------TTTTTGTTT--TTTGTTT-TTTGTTTTT---GTT------TT  30

seq1  TTTGTTTGTTTGGTTTTTGTTTATTTGTTTATTTATT  337
      ||||||  |||| ||||| ||  ||||||||||||||
seq2  TTTGTTGTTTTGTTTTTTTTTGTTTTGTTTATTTATT  67

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information