BAC Information

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BAC

Clone NameB6Ng01-308N12
Chromosome1 (Build37)
Map Location 120,963,823 - 121,128,569
singlet/doubletdoublet
Overlap geneLOC666838
Upstream geneLOC637083, Tsn, Mki67ip, Clasp1, Tcfcp2l1, LOC100041753, Gli2
Downstream geneLOC100041778, Inhbb, Ralb, Tmem185b, Epb4.1l5, Ptpn4, LOC100042447, LOC666870, LOC100041863, Tmem177, Gm101, Sctr, Tmem37, Dbi, 3110009E18Rik, Steap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308N12.bB6Ng01-308N12.g
ACCGA101241GA101242
length1,132386
definitionB6Ng01-308N12.b B6Ng01-308N12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,127,448 - 121,128,569)(120,963,823 - 120,964,214)
sequence
gaattcacagaagtcaggaggtctggtgtgggcagcactatattcactga
gggaagaggttagagagggaagccagctcatctgtgccaggggaagtcat
tgcttactgaagatgagctaggaagcccctggaggctcagagtgggaaac
agacagtcatgagattcactttttgggaaccatgaggtcagacagagggt
atgactgtcaggaaagcctgatacaatgttctctaccggcaaccatccag
cacattagtacccacaatcctcttaaatcctcctgaggaactagctaccc
agtgttccctagacagcaaccaaaggcacacacagtgaggggggggctag
ccacactgcagcgaatgcaaacaagggctgttccctagattcccttcagg
gtctcccaggtatggcttcatgccacccaaagttcctccaggagctggca
caactttatatccctatttgtgaaatgtggtgctgtggcccagagaagta
tgatcacacagacctggtgtgggcatgctgccgtgaaagtccccagcact
gtctgctgcacaggtgggatgtctgtctgtctctcttgtccccaaacagg
atgtccatggagcagacattttcctttgacgctgccttataatcttactt
cttagcatttaaaacatacaattagcatgagtgtccacaggctgtgtgta
gccccagatagctaaaaaggtcactcaatacaagagtgtatgcttacttc
aagtactgtgactgatttttaaacacctgtcttataactttacatgtata
tgttattgtgagtgtgaccacatgtgtgggtagctataaggacattaggg
gtcttcttcaaccattctgcaccttagtttttttgagacagtatctctcc
ctgaaattgattaggctaggctggtccaccagcaatcctccagggcccca
gtgctggggttacaggcatgtgacactggctttttaacatggagtccagg
tccagggctcttgaacacagggtccttatgctggcgagaggagggcggct
cttcagcatctaatagttgttgtccacaagttcagtctgggcgtctctcc
cgttctacgccggtcctgaaggtagaggttat
ttatagaatgctgataggatggaaagtggactgaagccttgtatacacct
gcactgctctagaaacaagagacgccagggactgaagagatggctgctct
tccagaggacctggttcaattcccaacatccacatgatggctcacaactg
tgcccagctcttttggtgtctgaggcatgcatgtgagacacagagatgca
tgcaggcaaaatacccatatgcataaaatgaggtttataaaaatcttttc
taaaaaagtttttttctttttttttttttttttaaagagaagccttttga
gtgttcagcagaggaaacaataatgatcatgtatattggtggaggttata
agggtagggacaggtacgagtggaggggagatgagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_121127448_121128569
seq2: B6Ng01-308N12.b_47_1178 (reverse)

seq1  ATAA-CTCTACC-TCAGGAC--GCGTAGAA-GGGAGAGACGCCAGAACTG  45
      |||| ||||||| |||||||  |||||||| ||||||||||||   ||||
seq2  ATAACCTCTACCTTCAGGACCGGCGTAGAACGGGAGAGACGCCCAGACTG  50

seq1  AACTTGT-GACAAC-ACTA-TAGATGGCTGAAGAGCCGCCCT-CTCTCG-  90
      ||||||| |||||| |||| ||||| |||||||||||||||| |||||| 
seq2  AACTTGTGGACAACAACTATTAGAT-GCTGAAGAGCCGCCCTCCTCTCGC  99

seq1  CAGCATAAGGA-CCTGTGTTC-AGAGCCCCTGGACCTGGACTCCATGTTA  138
      ||||||||||| ||||||||| |||| |||||||||||||||||||||||
seq2  CAGCATAAGGACCCTGTGTTCAAGAG-CCCTGGACCTGGACTCCATGTTA  148

seq1  AAAAGCCAGTGTCACATGCCTGTAACCCCAGCACTGGGGCCCTGGAGGAT  188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCAGTGTCACATGCCTGTAACCCCAGCACTGGGGCCCTGGAGGAT  198

seq1  TGCTGGTGGACCAGCCTAGCCTAATCAATTTCAGGGAGAGATACTGTCTC  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTGGACCAGCCTAGCCTAATCAATTTCAGGGAGAGATACTGTCTC  248

seq1  AAAAAAACTAAGGTGCAGAATGGTTGAAGAAGACCCCTAATGTCCTTATA  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACTAAGGTGCAGAATGGTTGAAGAAGACCCCTAATGTCCTTATA  298

seq1  GCTACCCACACATGTGGTCACACTCACAATAACATATACATGTAAAGTTA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCCACACATGTGGTCACACTCACAATAACATATACATGTAAAGTTA  348

seq1  TAAGACAGGTGTTTAAAAATCAGTCACAGTACTTGAAGTAAGCATACACT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACAGGTGTTTAAAAATCAGTCACAGTACTTGAAGTAAGCATACACT  398

seq1  CTTGTATTGAGTGACCTTTTTAGCTATCTGGGGCTACACACAGCCTGTGG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATTGAGTGACCTTTTTAGCTATCTGGGGCTACACACAGCCTGTGG  448

seq1  ACACTCATGCTAATTGTATGTTTTAAATGCTAAGAAGTAAGATTATAAGG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCATGCTAATTGTATGTTTTAAATGCTAAGAAGTAAGATTATAAGG  498

seq1  CAGCGTCAAAGGAAAATGTCTGCTCCATGGACATCCTGTTTGGGGACAAG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGTCAAAGGAAAATGTCTGCTCCATGGACATCCTGTTTGGGGACAAG  548

seq1  AGAGACAGACAGACATCCCACCTGTGCAGCAGACAGTGCTGGGGACTTTC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGACAGACATCCCACCTGTGCAGCAGACAGTGCTGGGGACTTTC  598

seq1  ACGGCAGCATGCCCACACCAGGTCTGTGTGATCATACTTCTCTGGGCCAC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCAGCATGCCCACACCAGGTCTGTGTGATCATACTTCTCTGGGCCAC  648

seq1  AGCACCACATTTCACAAATAGGGATATAAAGTTGTGCCAGCTCCTGGAGG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCACATTTCACAAATAGGGATATAAAGTTGTGCCAGCTCCTGGAGG  698

seq1  AACTTTGGGTGGCATGAAGCCATACCTGGGAGACCCTGAAGGGAATCTAG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGGGTGGCATGAAGCCATACCTGGGAGACCCTGAAGGGAATCTAG  748

seq1  GGAACAGCCCTTGTTTGCATTCGCTGCAGTGTGGCTAGCCCCCCCCTCAC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGCCCTTGTTTGCATTCGCTGCAGTGTGGCTAGCCCCCCCCTCAC  798

seq1  TGTGTGTGCCTTTGGTTGCTGTCTAGGGAACACTGGGTAGCTAGTTCCTC  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGCCTTTGGTTGCTGTCTAGGGAACACTGGGTAGCTAGTTCCTC  848

seq1  AGGAGGATTTAAGAGGATTGTGGGTACTAATGTGCTGGATGGTTGCCGGT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGATTTAAGAGGATTGTGGGTACTAATGTGCTGGATGGTTGCCGGT  898

seq1  AGAGAACATTGTATCAGGCTTTCCTGACAGTCATACCCTCTGTCTGACCT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACATTGTATCAGGCTTTCCTGACAGTCATACCCTCTGTCTGACCT  948

seq1  CATGGTTCCCAAAAAGTGAATCTCATGACTGTCTGTTTCCCACTCTGAGC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTCCCAAAAAGTGAATCTCATGACTGTCTGTTTCCCACTCTGAGC  998

seq1  CTCCAGGGGCTTCCTAGCTCATCTTCAGTAAGCAATGACTTCCCCTGGCA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGGGCTTCCTAGCTCATCTTCAGTAAGCAATGACTTCCCCTGGCA  1048

seq1  CAGATGAGCTGGCTTCCCTCTCTAACCTCTTCCCTCAGTGAATATAGTGC  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGAGCTGGCTTCCCTCTCTAACCTCTTCCCTCAGTGAATATAGTGC  1098

seq1  TGCCCACACCAGACCTCCTGACTTCTGTGAATTC  1122
      ||||||||||||||||||||||||||||||||||
seq2  TGCCCACACCAGACCTCCTGACTTCTGTGAATTC  1132

seq1: chr1_120963823_120964214
seq2: B6Ng01-308N12.g_69_460

seq1  GAATTCTTATAGAATGCTGATAGGATGGAAAGTGGACTGAAGCCTTGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATAGAATGCTGATAGGATGGAAAGTGGACTGAAGCCTTGTAT  50

seq1  ACACCTGCACTGCTCTAGAAACAAGAGACGCCAGGGACTGAAGAGATGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGCACTGCTCTAGAAACAAGAGACGCCAGGGACTGAAGAGATGGC  100

seq1  TGCTCTTCCAGAGGACCTGGTTCAATTCCCAACATCCACATGATGGCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTCCAGAGGACCTGGTTCAATTCCCAACATCCACATGATGGCTCA  150

seq1  CAACTGTGCCCAGCTCTTTTGGTGTCTGAGGCATGCATGTGAGACACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTGCCCAGCTCTTTTGGTGTCTGAGGCATGCATGTGAGACACAGA  200

seq1  GATGCATGCAGGCAAAATACCCATATGCATAAAATGAGGTTTATAAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCATGCAGGCAAAATACCCATATGCATAAAATGAGGTTTATAAAAAT  250

seq1  CTTTTCTAAAAAAGTTTTTTTCTTTTTTTTTTTTTTTTTAAAGAGAAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTAAAAAAGTTTTTTTCTTTTTTTTTTTTTTTTTAAAGAGAAGCC  300

seq1  TTTTGAGTGTTCAGCAGAGGAAACAATAATGATCATGTATATTGGTGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGTGTTCAGCAGAGGAAACAATAATGATCATGTATATTGGTGGAG  350

seq1  GTTATAAGGGTAGGGACAGGTACGAGTGGAGGGGAGATGAGT  392
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAAGGGTAGGGACAGGTACGAGTGGAGGGGAGATGAGT  392