BAC Information

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BAC

Clone NameB6Ng01-309J20
Chromosome1 (Build37)9 (Build37)
Map Location 75,784,059 - 75,784,47042,555,691 - 42,556,656
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309J20.bB6Ng01-309J20.g
ACCGA101813GA101814
length6641,141
definitionB6Ng01-309J20.b B6Ng01-309J20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(75,784,059 - 75,784,470)(42,555,691 - 42,556,656)
sequence
gaattcttgaagatcattggcaagatggtagaggagccttgggggccttc
cctgcaggaaaggggccatggagaacagatctgtatgtctgaggttttgc
tgcagcagcagactaattgtctgctttgaatgactgtctcgacggacggc
tgccccaccaggacccccttttctgtccccattagccttggttccaggtg
gatagtgggtgagagcagggaggctggggaacatgtgggtaggggtgggt
gctgccataatgaaccgtatcccctcaaactgcaagccaaagtaacctct
tccttctaatgctggttttgtcaagcatcttgtcacagcaaacgggaaaa
attaactagcataagcttttgaatatggaaagtctaggggcccaagagaa
ggctcgatggttaagagcactggctgctcttccagaggacctgggttcca
tttccagcatctgtatggcagcttacaactgtaaattcaatcacatgggg
gctctgaggctctcttctgggccctgtggtggccagacatacatccaggc
aaaacacccatacatagaaaaagtaattaattggttgagtaattagaatt
aaataaatatgtaaggtctagagataaaagggagcctaacaagctaatag
atagtaagtgtggg
gaattcaatacatgcaagggcttgaaaaaagtactctgggggctgcagag
atgcgcagcagttaagagcactagctgctccccagaggacctgatccacc
cagcacccacatggcagctcacagccatccctcagaacctgatgccttct
cctggcctctgcaggcactgcatgcatgtggtgtagccaaagcattcata
caaaaatgtttaatgaacaatatcttttaaaaaaagtactatgtgggctg
gagagatggattggagggtaagagcactcactggctgctcgtccagaggt
cctgagttcaattcctagcaaccacatggtggctcacaaccatctacaat
gggatctggtgccctcttctggtgttcaggcatacatgcaggcaaaacat
tatacacataaaaataaatctttttaaaaatgtactatgtattaatagat
aatagttccttctatgtttacacaccaataagaattgtcctgtgagaata
tctggcagaattcttaagccttgcaagaagctggaaatgtcttcactgta
ttgaaatagcctgatccttgaatagtaccatggacccagcctgccccttc
aaatgtcaaaagcacactccttacaagaactggaaaaaaaaaatgatgtg
atgaatttgcaaaatgccctctccatgtgtattattatgagatatcacac
ttagtaaccatcaccaacaactgtgaacatcccaacagcccctcaattgg
caagtggtcacatacacagaagtccatttcacaccgtggaatattactca
gtagtgaaaatgagcaaacctcgtagaggccacagcaacatcctcggtgc
actgtgttcagcgaaagggcccagacacaaaactcctgcacactgtgttg
atttcagcacatcggacagtctagtcatcctgtagggtgaagtatctgct
tttgtacttccagaccttcagaggccagaaaatgagctcaagacttccag
gagacccactggttaccttctagggaaaagccaagccctaagctgtgtca
tgcccttgaagctctaggtcacactggaagcattcagacctcaacttcaa
acccttgttcccctccttcatctgtcaatacagcttgacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_75784059_75784470
seq2: B6Ng01-309J20.b_297_709 (reverse)

seq1  CCCACACCTACTATCTCTTTGCTTGTCTGGCTCCCTTTTATCTCTAGACC  50
      ||||||| |||||||| || ||||||  ||||||||||||||||||||||
seq2  CCCACACTTACTATCTATTAGCTTGTTAGGCTCCCTTTTATCTCTAGACC  50

seq1  CTACATATTTATTTAATTCTAATTACTCAACCAATTAATTAC-TTTTCTA  99
       ||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTACATATTTATTTAATTCTAATTACTCAACCAATTAATTACTTTTTCTA  100

seq1  TGTATGGGTGTTTTGCCTGGATGTATGTCTGGCCACCACAGGGCCCAGAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGGTGTTTTGCCTGGATGTATGTCTGGCCACCACAGGGCCCAGAA  150

seq1  GAGAGCCTCAGAGCCCCCATGTGATTGAATTTACAGTTGTAAGCTGCCAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCCTCAGAGCCCCCATGTGATTGAATTTACAGTTGTAAGCTGCCAT  200

seq1  ACAGATGCTGGAAATGGAACCCAGGTCCTCTGGAAGAGCAGCCAGTGCTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGCTGGAAATGGAACCCAGGTCCTCTGGAAGAGCAGCCAGTGCTC  250

seq1  TTAACCATCGAGCCTTCTCTTGGGCCCCTAGACTTTCCATATTCAAAAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCATCGAGCCTTCTCTTGGGCCCCTAGACTTTCCATATTCAAAAGC  300

seq1  TTATGCTAGTTAATTTTTCCCGTTTGCTGTGACAAGATGCTTGACAAAAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCTAGTTAATTTTTCCCGTTTGCTGTGACAAGATGCTTGACAAAAC  350

seq1  CAGCATTAGAAGGAAGAGGTTACTTTGGCTTGCAGTTTGAGGGGATACGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTAGAAGGAAGAGGTTACTTTGGCTTGCAGTTTGAGGGGATACGG  400

seq1  TTCATTATGGCAG  412
      |||||||||||||
seq2  TTCATTATGGCAG  413

seq1: chr9_42555691_42556656
seq2: B6Ng01-309J20.g_238_1206

seq1  TGCATGTGGTGTAGCCAAAGCATTCATACAAAAATGTTTAATGAACAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTGGTGTAGCCAAAGCATTCATACAAAAATGTTTAATGAACAATA  50

seq1  TCTTTTAAAAAAAGTACTATGTGGGCTGGAGAGATGGATTGGAGGGTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAAAAAAAGTACTATGTGGGCTGGAGAGATGGATTGGAGGGTAAG  100

seq1  AGCACTCACTGGCTGCTCGTCCAGAGGTCCTGAGTTCAATTCCTAGCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTCACTGGCTGCTCGTCCAGAGGTCCTGAGTTCAATTCCTAGCAAC  150

seq1  CACATGGTGGCTCACAACCATCTACAATGGGATCTGGTGCCCTCTTCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGTGGCTCACAACCATCTACAATGGGATCTGGTGCCCTCTTCTGG  200

seq1  TGTTCAGGCATACATGCAGGCAAAACATTATACACATAAAAATAAATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGGCATACATGCAGGCAAAACATTATACACATAAAAATAAATCTT  250

seq1  TTTAAAAATGTACTATGTATTAATAGATAATAGTTCCTTCTATGTTTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATGTACTATGTATTAATAGATAATAGTTCCTTCTATGTTTACA  300

seq1  CACCAATAAGAATTGTCCTGTGAGAATATCTGGCAGAATTCTTAAGCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAATAAGAATTGTCCTGTGAGAATATCTGGCAGAATTCTTAAGCCTT  350

seq1  GCAAGAAGCTGGAAATGTCTTCACTGTATTGAAATAGCCTGATCCTTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAAGCTGGAAATGTCTTCACTGTATTGAAATAGCCTGATCCTTGAA  400

seq1  TAGTACCATGGACCCAGCCTGCCCCTTCAAATGTCAAAAGCACACTCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACCATGGACCCAGCCTGCCCCTTCAAATGTCAAAAGCACACTCCTT  450

seq1  ACAAGAACTGGAAAAAAAAAATGATGTGATGAATTTGCAAAATGCCCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAACTGGAAAAAAAAAATGATGTGATGAATTTGCAAAATGCCCTCT  500

seq1  CCATGTGTATTATTATGAGATATCACACTTAGTAACCATCACCAACAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGTATTATTATGAGATATCACACTTAGTAACCATCACCAACAACT  550

seq1  GTGAACATCCCAACAGCCCCTCAATTGGCAAGTGGTCACATACACAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACATCCCAACAGCCCCTCAATTGGCAAGTGGTCACATACACAGAAG  600

seq1  TCCATTTCACACCGTGGAATATTACTCAGTAGTGAAAATGAGCAAACCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTCACACCGTGGAATATTACTCAGTAGTGAAAATGAGCAAACCTC  650

seq1  GTAGAGGCCACAGCAACATCCTCGGTGCACTGTGTTCAGCGAAAGGGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGGCCACAGCAACATCCTCGGTGCACTGTGTTCAGCGAAAGGGCCC  700

seq1  AGACACAAAAC-CCTGCACACTGTG-TGA-TTCAGCACATCGAACAGTCT  747
      ||||||||||| ||||||||||||| ||| |||||||||||| |||||||
seq2  AGACACAAAACTCCTGCACACTGTGTTGATTTCAGCACATCGGACAGTCT  750

seq1  AGTCACCCTGTAGGGGTGAAGTATCTGC-TTTGTAC-TCCAGACCTTCAG  795
      ||||| |||||| ||||||||||||||| ||||||| |||||||||||||
seq2  AGTCATCCTGTA-GGGTGAAGTATCTGCTTTTGTACTTCCAGACCTTCAG  799

seq1  AGGCCAG-AAATGAGC-CCAGAC-TCCAGGAAGACCCACTGGT--ACTTC  840
      ||||||| |||||||| | |||| |||||| ||||||||||||   ||||
seq2  AGGCCAGAAAATGAGCTCAAGACTTCCAGG-AGACCCACTGGTTACCTTC  848

seq1  TA-GGAAAAGCCAAAGGCCCCAAAGCTGGTGTCATGCCC-TGAAGCCTTA  888
      || |||||||||||    ||| ||||| ||||||||||| ||||||  ||
seq2  TAGGGAAAAGCCAA---GCCCTAAGCT-GTGTCATGCCCTTGAAGCTCTA  894

seq1  G---TCACTGGAAGGCCATTCAGGACCCCAAACCTCAACACCCTTGTCTC  935
      |    |||||||||  |||||| |||| | ||| |||| ||||||||  |
seq2  GGTCACACTGGAAG--CATTCA-GACCTC-AACTTCAA-ACCCTTGTTCC  939

seq1  CCTCTCTCATCTGTCACTACAGCCTTGACAA  966
      ||||  |||||||||| ||||| ||||||||
seq2  CCTCCTTCATCTGTCAATACAG-CTTGACAA  969