BAC Information

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BAC

Clone NameB6Ng01-311P24
Chromosome1 (Build37)1 (Build37)
Map Location 158,494,704 - 158,495,797102,925,996 - 102,926,205
singlet/doubletsingletsinglet
Overlap geneAbl2
Upstream geneAcbd6, Lhx4, Qscn6, Cep350, LOC676894, Tor1aip1, Ifrg15, Tor1aip2, A230106N23Rik, Tdrd5, Nphs2, 9430070O13Rik, LOC100038991, Soat1, LOC100039026
Downstream geneTor3a, C530043G21Rik, LOC433368, Ralgps2, Angptl1, 4930439D14Rik, 1700057K13Rik, Rasal2, Gabarapl2-ps1_1522.1, 2810025M15Rik, BC026585, Lztr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311P24.bB6Ng01-311P24.g
ACCGA103579GA103580
length1,095494
definitionB6Ng01-311P24.b B6Ng01-311P24.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(158,494,704 - 158,495,797)(102,925,996 - 102,926,205)
sequence
gaattcctaatagatgtctaaggcattctccctagtttattagtatatta
tgtaatttataagaacctttttatttctagattatctatcaggcctgtgc
tgtaagaacttttagctgtggagctatcttgccagcccagagcatttcct
ctctttctatattagtgtagcctagacttactaattgtacatgctaatga
ctcttaagagaatttttaggtataatttagatagaactgcttttcaaagc
tgttgatgctcaggtaattgttagtgaacatcttcatttcagaagttatt
ctgccttggcctggtctccatctgagaagatcctcttgtcccctcctgtc
tctgagcactggagttagaggaaggtaccatcatgcctggcgaaaagctt
tattttatcatttttaattatgtgtaagtgtcctgagtaggtatgtgaac
attaatgcaggtgtctatagagatcagacactttggaccccttggagttg
agctgcaggtgctacggggccatggtggaagccacagtcaggtgtgttct
ttaggagcagcatctgttcctgaccacctacctagccatctctctagaca
cagccaccaatctttacattttttaatttttaaatgttaaaaacttttgt
gtgtgaaagtaagatattttgtgcaacaattcttttttagcagccactgc
cttttgggggttacatgcatactctgagaataccatacaaattagaactc
tttcaatattgctttcagtcaaacataaaagcatcgatgaatacacactt
aatttaatagtatcccagacttagtctggatttcttaaagaaacaataac
tacattggactctcacttattttgcttcttgtaagtgtgctgagtagtga
ttctttggagtctccagggagctcttgcctgccagggttgggttttgatc
agcataacacagagcctcagcagctcaaggccatttgtattctcggggtg
ctgttcctagagaagggctggctcagagtctttcagttgatgtggtcaag
acaaaaggtattatactgagagtgtaatccctgttttcatatcta
ctgatttaatcctaggggaaaagttttaagaaatggttttagttgttttg
cgaggaagatgtaataaagttaaaatcaaaaatagaacatgcctactcct
cataaaggctgcataataagaaatgcaacgagctttcataattacactaa
aaagagaaataggcttgagacaaatttgtgttcacagaaaaccattcatt
ctaggtcagatccaaggatgaagtcacaggtgtgcactataagacaaggc
cacaggaaactgttgctttgaacttataatgagtatacagaatgaaatac
tactttgaacttaatatcaacatccttttgtaacttccattttgggtagc
attttatcaatgaggtaattttctaagagtttttgtctataaaaaagcca
aagaaaagaaataaagaggatggggttggtttggggggctctgccctatc
catccatccatccatccatccaaatgtctatgtatgtgtgtagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_158494704_158495797
seq2: B6Ng01-311P24.b_51_1145

seq1  GAATTCCTAATAGATGTCTAAGGCATTCTCCCTAGTTTATTAGTATATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAATAGATGTCTAAGGCATTCTCCCTAGTTTATTAGTATATTA  50

seq1  TGTAATTTATAAGAACCTTTTTATTTCTAGATTATCTATCAGGCCTGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTTATAAGAACCTTTTTATTTCTAGATTATCTATCAGGCCTGTGC  100

seq1  TGTAAGAACTTTTAGCTGTGGAGCTATCTTGCCAGCCCAGAGCATTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGAACTTTTAGCTGTGGAGCTATCTTGCCAGCCCAGAGCATTTCCT  150

seq1  CTCTTTCTATATTAGTGTAGCCTAGACTTACTAATTGTACATGCTAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTATATTAGTGTAGCCTAGACTTACTAATTGTACATGCTAATGA  200

seq1  CTCTTAAGAGAATTTTTAGGTATAATTTAGATAGAACTGCTTTTCAAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAAGAGAATTTTTAGGTATAATTTAGATAGAACTGCTTTTCAAAGC  250

seq1  TGTTGATGCTCAGGTAATTGTTAGTGAACATCTTCATTTCAGAAGTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGATGCTCAGGTAATTGTTAGTGAACATCTTCATTTCAGAAGTTATT  300

seq1  CTGCCTTGGCCTGGTCTCCATCTGAGAAGATCCTCTTGTCCCCTCCTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTGGCCTGGTCTCCATCTGAGAAGATCCTCTTGTCCCCTCCTGTC  350

seq1  TCTGAGCACTGGAGTTAGAGGAAGGTACCATCATGCCTGGCGAAAAGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCACTGGAGTTAGAGGAAGGTACCATCATGCCTGGCGAAAAGCTT  400

seq1  TATTTTATCATTTTTAATTATGTGTAAGTGTCCTGAGTAGGTATGTGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATCATTTTTAATTATGTGTAAGTGTCCTGAGTAGGTATGTGAAC  450

seq1  ATTAATGCAGGTGTCTATAGAGATCAGACACTTTGGACCCCTTGGAGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGCAGGTGTCTATAGAGATCAGACACTTTGGACCCCTTGGAGTTG  500

seq1  AGCTGCAGGTGCTACGGGGCCATGGTGGAAGCCACAGTCAGGTGTGTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCAGGTGCTACGGGGCCATGGTGGAAGCCACAGTCAGGTGTGTTCT  550

seq1  TTAGGAGCAGCATCTGTTCCTGACCACCTACCTAGCCATCTCTCTAGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAGCAGCATCTGTTCCTGACCACCTACCTAGCCATCTCTCTAGACA  600

seq1  CAGCCACCAATCTTTACATTTTTTAATTTTTAAATGTTAAAAACTTTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACCAATCTTTACATTTTTTAATTTTTAAATGTTAAAAACTTTTGT  650

seq1  GTGTGAAAGTAAGATATTTTGTGCAACAATTCTTTTTTAGCAGCCACTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAAAGTAAGATATTTTGTGCAACAATTCTTTTTTAGCAGCCACTGC  700

seq1  CTTTT-GGGGTTACATGCATACTCTGAGAATACCATACAAATTAGAACTC  749
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGGGGTTACATGCATACTCTGAGAATACCATACAAATTAGAACTC  750

seq1  TTTCAATATTGCTTTCAGTCAAACATAAAAGCATCGATGAATACACACTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATATTGCTTTCAGTCAAACATAAAAGCATCGATGAATACACACTT  800

seq1  AATTTAATAGTATCCCAGACTTAGTCTGGATTTCTTAAAGAAACAATAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAATAGTATCCCAGACTTAGTCTGGATTTCTTAAAGAAACAATAAC  850

seq1  TACATTGGACTCTCACTTATTTTGCTTCTTGTAAGTGTGCTGAGTAGTGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGGACTCTCACTTATTTTGCTTCTTGTAAGTGTGCTGAGTAGTGA  900

seq1  TTCTTTGGAGTCTCCAGGGAGCTC-TGCCTGCCAGGGTTGGGTTTTGATC  948
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTCTTTGGAGTCTCCAGGGAGCTCTTGCCTGCCAGGGTTGGGTTTTGATC  950

seq1  AGCATAACACAGAG-CTCAGCAGGCTC-AGGCCATTTGTATTCTC-GGGT  995
      |||||||||||||| ||||||| |||| ||||||||||||||||| ||||
seq2  AGCATAACACAGAGCCTCAGCA-GCTCAAGGCCATTTGTATTCTCGGGGT  999

seq1  GCTG-TCCTAGGAGAGGGCTGGCTCAGAAGTCTTTCAGTTGATGTGGTCA  1044
      |||| ||||||   ||||||||||||| ||||||||||||||||||||||
seq2  GCTGTTCCTAGAGAAGGGCTGGCTCAG-AGTCTTTCAGTTGATGTGGTCA  1048

seq1  AGGACAAAA-GTATTATACTGAAGAGTGTATACACATGTTTTCATAATCT  1093
      | ||||||| ||||||||||| |||||||| |  | ||||||||| ||||
seq2  A-GACAAAAGGTATTATACTG-AGAGTGTA-ATCCCTGTTTTCAT-ATCT  1094

seq1  A  1094
      |
seq2  A  1095

seq1: chr1_102925996_102926205
seq2: B6Ng01-311P24.g_518_565 (reverse)

seq1  CTACACACATACATAGAGATATAAAGAGACAAAGGCAAAAACAGAGATAA  50
                                                        
seq2  --------------------------------------------------  0

seq1  AGTGAGACAGATACACACATACATAGAGATAGAAAGAGACAGAAGCAAAG  100
                                                        
seq2  --------------------------------------------------  0

seq1  ACAGAGACAGACAGATACACACAGAGAGCAGGGGGGGAATAGAAAGAGAA  150
                                                        
seq2  --------------------------------------------------  0

seq1  ATAGATAGATAGATAGATAGATAGATGGATGGATGGATGGATGGATGGAT  200
               || | | ||| |||||   ||   |||||||||||||||||
seq2  --------CTACACACATACATAGA--CAT--TTGGATGGATGGATGGAT  38

seq1  GGATGGATAG  210
      ||||||||||
seq2  GGATGGATAG  48