BAC Information

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BAC

Clone NameB6Ng01-312I18
Chromosome1 (Build37)
Map Location 47,908,737 - 48,071,161
singlet/doubletdoublet
Overlap genenone
Upstream geneSlc39a10, EG227061, LOC666869
Downstream geneLOC546734, LOC674566, LOC100041936, LOC666903, LOC666909
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312I18.bB6Ng01-312I18.g
ACCGA103989GA103990
length1,1501,123
definitionB6Ng01-312I18.b B6Ng01-312I18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,070,014 - 48,071,161)(47,908,737 - 47,909,858)
sequence
gaattccatcactctatgacagtacatctgaagacattgtcttactgatt
taccgtgaatctatttcacagttacactgttttgcatattctgatccttt
gtgtttatatgatggcaaaagacattgaggatcatattttttgctagaaa
ataatcatttgaaaaataaaatacatcatatactattgcaatggaaagat
gctaagctaagtaagttgcaggagaaaatccatctacatgacaaattttt
tatgctttatttgacatcaaacgttattcttgagatgttgctatgcaaat
gttttttctcttattttatcttctctctttcctaaaatcattctatattt
tatcatgctaattcacaattttgctgtcaaaggggcacatagccagaata
attatatttcctagatgacttaatataaaattgtatcatttccagagtaa
atgaatatattataaatcaatactgtatgacaaaatacataccaaatcca
catgatgagaaagtttaaatcagcaaagaacacagaaatgggaagagaaa
gtccaaatactgccttcacacgggaagtgtcagggctagtgtgaacctta
gttctataaagtgtgctttagcactttaccagtggtttgggaaatacaga
atataatttgcagaagaacattcagtgagttgtcagaaataacattattt
ggtatgatcaatgcatttgtttaaaaactatttgtcattgagttttcatg
aaagggcaaaataccaactgaactaatattcttaaataagcaaattcctt
taagcacaggtaatttcaatgttatttatacaatatgtgcaattaacttt
atctaaaggaaggaacactggcttctatgaatctggtaggagaaagaata
tatgcagtgactagagattctacattatttctttgaactcttcaaaagac
tgcagtcattgactatatttgtacctctgacatacctctttatattctga
tcagagagcttatagggatttacagcatcatatagagaggacattcaaac
actcgacttttatctgagttcattgtttgttgtgatctagaaagcagttt
ccaaattcttatacctcaaaaaaaggaaagtcaactgtatattagtctgt


gaattctcaaattgtctctgtgttaagccaatgcctggtcatagaggcat
gatcagcttcagccagaaaatactgctaacaaatgcaataaattctaatt
agatttctttgtcatctaggttgagacctttggtaataaaatatctacag
gaagtggcaaactgaaaattaaaggctaataaaagaaatctaatacaaaa
atttataaacactttcaaattaagtaatacttcaagcttttgaactccat
tcaattttataggtacaacattttcttagactcccgctgtcttcatacaa
ttggagaaagttgtattattagaaaaatatggctatcttgatcaatttag
gattataaaattcctcttttttaaaaaaagagggattgtcactcccacca
accatgttattagagttcctccaaactgtgcctcattagaattttatttg
tgtttatacttattgttcaattaagaaagaaagccttaaaccaatcaggc
cacagaaaactactttagagaagtgctaaggaacattttagatttttggg
acacagttacccaatcaaagtgtgaataatgtggaacacagacagatctc
tgttcagaatgaataacaggagaacatcccgaaatgcttcaaagcatgtc
acagaaaagggcagctgagaagtcgtgtgttgtgaaagggtcttcaaatg
tcctgagaagtccatcaacttcagaggtaagctactatgcaggctgacct
tccattgtgcctttgatggttgtcttcctcttccacccactataattgct
cattctcctgtaatcgtgtccaaattcctaccattttgctcatggttcaa
gaatgtttaagtaaaaaaatatatacttatctgtttctacttgctaagaa
tatttgaaatgaagattttatgcttgcaagattttatattttcagtactc
ttaaaatttgaatcaagtctatgatattatttgttagtggggaaatattt
ttagcttttagttcttctacaatattctaataactatttacagttttatt
ttgtttacatctttcatcttttttttttcaaactcctttcaatgctgtga
ccagtcctttggcctagaagtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_48070014_48071161
seq2: B6Ng01-312I18.b_48_1197 (reverse)

seq1  ACAGATTAATATACATTTAACTTTCCTTTTTTTTGAGTAT-AGA--TTGG  47
      ||||| ||||||||| || ||||||||||||||   |||| |||  ||||
seq2  ACAGACTAATATACAGTTGACTTTCCTTTTTTTGAGGTATAAGAATTTGG  50

seq1  GAACTGCTTTCTAGATCACAACAAACAATGAACTTCAGATAAAGTCCGAG  97
       |||||||||||||||||||||||||||||||| |||||||||   ||||
seq2  AAACTGCTTTCTAGATCACAACAAACAATGAAC-TCAGATAAAAGTCGAG  99

seq1  TGTTTGAATGTCCTCTCTATATTGATGCTGT-AATTCCTATAAGCTCTCT  146
      ||||||||||||||||||||| ||||||||| ||| ||||||||||||||
seq2  TGTTTGAATGTCCTCTCTATA-TGATGCTGTAAATCCCTATAAGCTCTCT  148

seq1  GATCAGGAATATAAAGAGGTATGTCAGAGGTACAAATATAGTCAATGACT  196
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCA-GAATATAAAGAGGTATGTCAGAGGTACAAATATAGTCAATGACT  197

seq1  GCAGTCTTTTGAAGAGTTCAAAGAAATAATGTAGAATCTCTAGTCACTGC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCTTTTGAAGAGTTCAAAGAAATAATGTAGAATCTCTAGTCACTGC  247

seq1  ATATATTCTTTCTCCTACCAGATTCATAGAAGCCAGTGTTCCTTCC-TTA  295
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATATATTCTTTCTCCTACCAGATTCATAGAAGCCAGTGTTCCTTCCTTTA  297

seq1  GATAAAGTTAATTGCACATATTGTATAAATAACATTGAAATTACCTGTGC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGTTAATTGCACATATTGTATAAATAACATTGAAATTACCTGTGC  347

seq1  TTAAAGGAATTTGCTTATTTAAGAATATTAGTTCAGTTGGTATTTTGCCC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGAATTTGCTTATTTAAGAATATTAGTTCAGTTGGTATTTTGCCC  397

seq1  TTTCATGAAAACTCAATGACAAATAGTTTTTAAACAAATGCATTGATCAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGAAAACTCAATGACAAATAGTTTTTAAACAAATGCATTGATCAT  447

seq1  ACCAAATAATGTTATTTCTGACAACTCACTGAATGTTCTTCTGCAAATTA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATAATGTTATTTCTGACAACTCACTGAATGTTCTTCTGCAAATTA  497

seq1  TATTCTGTATTTCCCAAACCACTGGTAAAGTGCTAAAGCACACTTTATAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGTATTTCCCAAACCACTGGTAAAGTGCTAAAGCACACTTTATAG  547

seq1  AACTAAGGTTCACACTAGCCCTGACACTTCCCGTGTGAAGGCAGTATTTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGGTTCACACTAGCCCTGACACTTCCCGTGTGAAGGCAGTATTTG  597

seq1  GACTTTCTCTTCCCATTTCTGTGTTCTTTGCTGATTTAAACTTTCTCATC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTCTCTTCCCATTTCTGTGTTCTTTGCTGATTTAAACTTTCTCATC  647

seq1  ATGTGGATTTGGTATGTATTTTGTCATACAGTATTGATTTATAATATATT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGATTTGGTATGTATTTTGTCATACAGTATTGATTTATAATATATT  697

seq1  CATTTACTCTGGAAATGATACAATTTTATATTAAGTCATCTAGGAAATAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACTCTGGAAATGATACAATTTTATATTAAGTCATCTAGGAAATAT  747

seq1  AATTATTCTGGCTATGTGCCCCTTTGACAGCAAAATTGTGAATTAGCATG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTCTGGCTATGTGCCCCTTTGACAGCAAAATTGTGAATTAGCATG  797

seq1  ATAAAATATAGAATGATTTTAGGAAAGAGAGAAGATAAAATAAGAGAAAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATATAGAATGATTTTAGGAAAGAGAGAAGATAAAATAAGAGAAAA  847

seq1  AACATTTGCATAGCAACATCTCAAGAATAACGTTTGATGTCAAATAAAGC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTGCATAGCAACATCTCAAGAATAACGTTTGATGTCAAATAAAGC  897

seq1  ATAAAAAATTTGTCATGTAGATGGATTTTCTCCTGCAACTTACTTAGCTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAATTTGTCATGTAGATGGATTTTCTCCTGCAACTTACTTAGCTT  947

seq1  AGCATCTTTCCATTGCAATAGTATATGATGTATTTTATTTTTCAAATGAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTTTCCATTGCAATAGTATATGATGTATTTTATTTTTCAAATGAT  997

seq1  TATTTTCTAGCAAAAAATATGATCCTCAATGTCTTTTGCCATCATATAAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTAGCAAAAAATATGATCCTCAATGTCTTTTGCCATCATATAAA  1047

seq1  CACAAAGGATCAGAATATGCAAAACAGTGTAACTGTGAAATAGATTCACG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGGATCAGAATATGCAAAACAGTGTAACTGTGAAATAGATTCACG  1097

seq1  GTAAATCAGTAAGACAATGTCTTCAGATGTACTGTCATAGAGTGATGGAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATCAGTAAGACAATGTCTTCAGATGTACTGTCATAGAGTGATGGAA  1147

seq1  TTC  1148
      |||
seq2  TTC  1150


seq1: chr1_47908737_47909858
seq2: B6Ng01-312I18.g_66_1188

seq1  GAATTCTCAAATTGTCTCTGTGTTAAGCCAATGCCTGGTCATAGAGGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAATTGTCTCTGTGTTAAGCCAATGCCTGGTCATAGAGGCAT  50

seq1  GATCAGCTTCAGCCAGAAAATACTGCTAACAAATGCAATAAATTCTAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGCTTCAGCCAGAAAATACTGCTAACAAATGCAATAAATTCTAATT  100

seq1  AGATTTCTTTGTCATCTAGGTTGAGACCTTTGGTAATAAAATATCTACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCTTTGTCATCTAGGTTGAGACCTTTGGTAATAAAATATCTACAG  150

seq1  GAAGTGGCAAACTGAAAATTAAAGGCTAATAAAAGAAATCTAATACAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGCAAACTGAAAATTAAAGGCTAATAAAAGAAATCTAATACAAAA  200

seq1  ATTTATAAACACTTTCAAATTAAGTAATACTTCAAGCTTTTGAACTCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAAACACTTTCAAATTAAGTAATACTTCAAGCTTTTGAACTCCAT  250

seq1  TCAATTTTATAGGTACAACATTTTCTTAGACTCCCGCTGTCTTCATACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTTATAGGTACAACATTTTCTTAGACTCCCGCTGTCTTCATACAA  300

seq1  TTGGAGAAAGTTGTATTATTAGAAAAATATGGCTATCTTGATCAATTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAAAGTTGTATTATTAGAAAAATATGGCTATCTTGATCAATTTAG  350

seq1  GATTATAAAATTCCTCTTTTTTAAAAAAAGAGGGATTGTCACTCCCACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATAAAATTCCTCTTTTTTAAAAAAAGAGGGATTGTCACTCCCACCA  400

seq1  ACCATGTTATTAGAGTTCCTCCAAACTGTGCCTCATTAGAATTTTATTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTTATTAGAGTTCCTCCAAACTGTGCCTCATTAGAATTTTATTTG  450

seq1  TGTTTATACTTATTGTTCAATTAAGAAAGAAAGCCTTAAACCAATCAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATACTTATTGTTCAATTAAGAAAGAAAGCCTTAAACCAATCAGGC  500

seq1  CACAGAAAACTACTTTAGAGAAGTGCTAAGGAACATTTTAGATTTTTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAAACTACTTTAGAGAAGTGCTAAGGAACATTTTAGATTTTTGGG  550

seq1  ACACAGTTACCCAATCAAAGTGTGAATAATGTGGAACACAGACAGATCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTTACCCAATCAAAGTGTGAATAATGTGGAACACAGACAGATCTC  600

seq1  TGTTCAGAATGAATAACAGGAGAACATCCCGAAATGCTTCAAAGCATGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGAATGAATAACAGGAGAACATCCCGAAATGCTTCAAAGCATGTC  650

seq1  ACAGAAAAGGGCAGCTGAGAAGTCGTGTGTTGTGAAAGGGTCTTCAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAAGGGCAGCTGAGAAGTCGTGTGTTGTGAAAGGGTCTTCAAATG  700

seq1  TCCTGAGAAGTCCATCAACTTCAGAGGTAAGCTACTATGCAGGCTGACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGAAGTCCATCAACTTCAGAGGTAAGCTACTATGCAGGCTGACCT  750

seq1  TCCATTGTGCCTTTGATGGTTGTCTTCCTCTTCCACCCACTATAATTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGTGCCTTTGATGGTTGTCTTCCTCTTCCACCCACTATAATTGCT  800

seq1  CATTCTCCTGTAATCGTGTCCAAATTCCTACCATTTTGCTCATGGTTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCCTGTAATCGTGTCCAAATTCCTACCATTTTGCTCATGGTTCAA  850

seq1  GAATGTTTAAGTAAAAAAATATATACTTATCTGTTTCTACTTGCTAAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTTAAGTAAAAAAATATATACTTATCTGTTTCTACTTGCTAAGAA  900

seq1  TATTTGAAATGAAGATTTTATGCTTGCAAGATTTTATATTTTCAGTACTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAAATGAAGATTTTATGCTTGCAAGATTTTATATTTTCAGTACTC  950

seq1  TTAAAATTTGAATCAAAGTCTATGATA-TATTTGTTAGT-GGGAAATA-T  997
      |||||||||||||| |||||||||||| ||||||||||| |||||||| |
seq2  TTAAAATTTGAATC-AAGTCTATGATATTATTTGTTAGTGGGGAAATATT  999

seq1  TTTAGCTTTTAAGTTCTTCTACAATATTCTAATAACTATTTACAGTTTTA  1047
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTTTT-AGTTCTTCTACAATATTCTAATAACTATTTACAGTTTTA  1048

seq1  TTTTGTTTTACCATCTTTTCATCTTTTTTTTTCAAAACTCCTTTCAATGC  1097
      ||||||||   |||| ||||||||||||||||  ||||||||||||||||
seq2  TTTTGTTT--ACATC-TTTCATCTTTTTTTTTTCAAACTCCTTTCAATGC  1095

seq1  TGTGAACAGTCTTTTG--CTAG-AGTAG  1122
      ||||| ||||| ||||  |||| |||||
seq2  TGTGACCAGTCCTTTGGCCTAGAAGTAG  1123


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