BAC Information

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BAC

Clone NameB6Ng01-312P09
Chromosome1 (Build37)
Map Location 75,586,625 - 75,733,750
singlet/doubletdoublet
Overlap geneLOC383531
Upstream geneUsp37, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312P09.bB6Ng01-312P09.g
ACCGA104299GA104300
length1,0941,142
definitionB6Ng01-312P09.b B6Ng01-312P09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,586,625 - 75,587,708)(75,732,617 - 75,733,750)
sequence
gaattcttcacaaattcctaagatcccaggctgtttggtataatttcata
aggcatcccaagcatacaaaaacaaccccatcttgtccaagaatatattc
ccagcttggcatctgctcagttcccatggcgtttgggcactgggctctaa
cctttgagtcttgatggaaaattccaatgaaccttccttctccagccccc
agctatatttagcctcaaaaaagcaagttccagtaccttaactccaggat
agtcaaccacacagagggcctgaacataatgactcctcttgcctattatt
ttgtccctagttacagagggtgacactgaccttaagtcattggcacttga
aggatatcaatcagttagtcaatcaaccaacagtggttggctgactactc
ttttaagtgtctgtggaagaaatgaaccacaagcctcagcccctgctctt
gagaactggtagtttgtttgggggaaggagacacgagtaaaataaaataa
cacaaagatttgactactcccggagtaggtaccatatgctcacttaagag
actgggtggcaggcactctgtctttttggtgtgtttggggggaatctggg
gatcacttttacaatcataggattgtaaacaaaactgaattctccaaaca
ggaaaaccaaagcaaaggtgagtgtgtgggtggcaacagcttctgctctg
cccagtaaatacaggttagcagtcgcctcgcttcctttcttgctactgtg
ataggattccctgagtgttgttagaattactactgttctttttttttgtt
tttgtttttgttttttgtttttccgagacagggtttttctgtgtagccct
ggctgtcctggaactcactctgtagaccaggctggcctcgaacttcagaa
atctgcctgcctctgcctcccaggtgctgggattaaaggcgtgcgccacc
cacgcccggctcggatttactactgttcttaataaaccggtatcaaaaac
acacaattcaagaatatttttatttacagccaattgcctagaattggggc
agatctaaggggcatcctacgtactcaccagtctggttaaagcc
gaattctcagccacactaggactctgctatcaacacttctggacacaagg
gcatctcaactgtgttgagtcagggctccttcattggaacctttgcttgc
aaacgtcagtttccttcattgtacagtggcattggtcaaccccactggtt
atttggaatatccattcagataatgtcattttactccatgtgagagcact
tctatatgagcagattcaatggtatagcttagtctctccatcaaaagttt
tgggtggagcagggtaacctctgtatctctaactcttggagttcacatac
aatgtctgtccttctcacatatgtggtgtaggaaatcagcccaagttaac
ccacatactgtgggagatgtcagaaaacaaaattgcaggcatttgaagat
ctccattgacatttattttttccattctaaaggcagacaagacttcactg
aagaaatgggatatgttttctaataggcctggaagaatttagttttacag
acagaaaggggctgaagaaagtaaaaacaaagatcaaactgatcgctttt
atgttacattccctataacacagggaaaggaaagcaggatcattaaaaaa
aaaagacccactagttaccgctggtcattttgaggtatctttctatataa
gaattaaagcagaaaggatttatcaggcaattgaatctgatctatttgag
aaattgaactataatctcccaaattctgatttctcggataagactaaaag
cttggcgatgaacctggggaaactgtaagaaatttaaggttgatttttag
cctaagttgtaggggtccacacaggtgcttagtctgaagttatggcatcc
cataatgttcatttaccatagttactgcctcagcccttcctgtgcacaca
gcccacccttcctcttgcagccccagagagacaaactccttaattcttct
tcttttgaaccttggaaggcatgggcattctcctgcccagaatacccctg
actcacacctccagtgaatgggaaagttccctgagcaacctgctgcacaa
gaagaacagttatcaccttagcctgatgcccagaccagagcctctgatct
agccctctaaggatttccaaatgctacttggccaatgaacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_75586625_75587708
seq2: B6Ng01-312P09.b_52_1145

seq1  GAATTCTTCACAAATTCCTAAGATCCCAGGCTGTTTGGTATAATTTCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCACAAATTCCTAAGATCCCAGGCTGTTTGGTATAATTTCATA  50

seq1  AGGCATCCCAAGCATACAAAAACAACCCCATCTTGTCCAAGAATATATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATCCCAAGCATACAAAAACAACCCCATCTTGTCCAAGAATATATTC  100

seq1  CCAGCTTGGCATCTGCTCAGTTCCCATGGCGTTTGGGCACTGGGCTCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTGGCATCTGCTCAGTTCCCATGGCGTTTGGGCACTGGGCTCTAA  150

seq1  CCTTTGAGTCTTGATGGAAAATTCCAATGAACCTTCCTTCTCCAGCCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGAGTCTTGATGGAAAATTCCAATGAACCTTCCTTCTCCAGCCCCC  200

seq1  AGCTATATTTAGCCTCAAAAAAGCAAGTTCCAGTACCTTAACTCCAGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATATTTAGCCTCAAAAAAGCAAGTTCCAGTACCTTAACTCCAGGAT  250

seq1  AGTCAACCACACAGAGGGCCTGAACATAATGACTCCTCTTGCCTATTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAACCACACAGAGGGCCTGAACATAATGACTCCTCTTGCCTATTATT  300

seq1  TTGTCCCTAGTTACAGAGGGTGACACTGACCTTAAGTCATTGGCACTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCCTAGTTACAGAGGGTGACACTGACCTTAAGTCATTGGCACTTGA  350

seq1  AGGATATCAATCAGTTAGTCAATCAACCAACAGTGGTTGGCTGACTACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATCAATCAGTTAGTCAATCAACCAACAGTGGTTGGCTGACTACTC  400

seq1  TTTTAAGTGTCTGTGGAAGAAATGAACCACAAGCCTCAGCCCCTGCTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGTGTCTGTGGAAGAAATGAACCACAAGCCTCAGCCCCTGCTCTT  450

seq1  GAGAACTGGTAGTTTGTTTGGGGGAAGGAGACACGAGTAAAATAAAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACTGGTAGTTTGTTTGGGGGAAGGAGACACGAGTAAAATAAAATAA  500

seq1  CACAAAGATTTGACTACTCCCGGAGTAGGTACCATATGCTCACTTAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGATTTGACTACTCCCGGAGTAGGTACCATATGCTCACTTAAGAG  550

seq1  ACTGGGTGGCAGGCACTCTGTCTTTTTGGTGTGTTTGGGGGGAATCTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTGGCAGGCACTCTGTCTTTTTGGTGTGTTTGGGGGGAATCTGGG  600

seq1  GATCACTTTTACAATCATAGGATTGTAAACAAAACTGAATTCTCCAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACTTTTACAATCATAGGATTGTAAACAAAACTGAATTCTCCAAACA  650

seq1  GGAAAACCAAAGCAAAGGTGAGTGTGTGGGTGGCAACAGCTTCTGCTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACCAAAGCAAAGGTGAGTGTGTGGGTGGCAACAGCTTCTGCTCTG  700

seq1  CCCAGTAAATACAGGTTAGCAGTCGCCTCGCTTCCTTTCTTGCTACTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTAAATACAGGTTAGCAGTCGCCTCGCTTCCTTTCTTGCTACTGTG  750

seq1  ATAGGATTCCCTGAGTGTTGTTAGAATTACTACTGTTCTTTTTTTTTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATTCCCTGAGTGTTGTTAGAATTACTACTGTTCTTTTTTTTTGTT  800

seq1  TTTGTTTTTG-TTTTTGTTTTTCCGAGACAGGGTTTTTCTGTGTAGCCCT  849
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTGTTTTTTGTTTTTCCGAGACAGGGTTTTTCTGTGTAGCCCT  850

seq1  GGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAAC-TCAGAA  898
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTTCAGAA  900

seq1  ATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCA-C  947
      |||||||||||||||||||||| ||||||||||||||||||||||||| |
seq2  ATCTGCCTGCCTCTGCCTCCCAGGTGCTGGGATTAAAGGCGTGCGCCACC  950

seq1  CACGCCCGGCTCGGAATTACTACTGTTC-TAATAAACCGGTATCAAAAAC  996
      ||||||||||||||| |||||||||||| |||||||||||||||||||||
seq2  CACGCCCGGCTCGGATTTACTACTGTTCTTAATAAACCGGTATCAAAAAC  1000

seq1  ACACAA-TCAAG-ATA-TTTTATTTACAAGCCAAATGCCTAGA--TTGGG  1041
      |||||| ||||| ||| |||||||||| |||||| ||||||||  | |||
seq2  ACACAATTCAAGAATATTTTTATTTAC-AGCCAATTGCCTAGAATTGGGG  1049

seq1  CAGATCT-AGGGCCATCCTAACGTACTCACCAG-CT-GTTAAAGCC  1084
      ||||||| |||| |||||| ||||||||||||| || |||||||||
seq2  CAGATCTAAGGGGCATCCT-ACGTACTCACCAGTCTGGTTAAAGCC  1094

seq1: chr1_75732617_75733750
seq2: B6Ng01-312P09.g_67_1208 (reverse)

seq1  AGGTGTCATTGCACAAGTAGCATTGGGAA--CCCTAGAGGGGTTAGATCA  48
      |||| ||||||  ||||||||||| ||||  || |||| ||| |||||||
seq2  AGGT-TCATTGGCCAAGTAGCATTTGGAAATCCTTAGA-GGGCTAGATCA  48

seq1  GAGGCTCTGGGTCTGGGGCATCAGCCTA--GTGAT-ACTG-TCTCTTGGT  94
      |||||||| ||||| ||||||||| |||  ||||| |||| |||  | ||
seq2  GAGGCTCT-GGTCT-GGGCATCAGGCTAAGGTGATAACTGTTCTTCTTGT  96

seq1  GCAGCAGGGTTGGCTCAGGG-ACTTT-CCATTCACTGGA-GTGTGAGTCA  141
      ||||||||  | |||||||| ||||| |||||||||||| ||||||||||
seq2  GCAGCAGG--TTGCTCAGGGAACTTTCCCATTCACTGGAGGTGTGAGTCA  144

seq1  GGGGTA-TCTGGGCAGGAGAATG-CCATGCCTTCCAA-GTTCAAA--GAG  186
      |||||| |||||||||||||||| ||||||||||||| |||||||   ||
seq2  GGGGTATTCTGGGCAGGAGAATGCCCATGCCTTCCAAGGTTCAAAAGAAG  194

seq1  AAGAATTAAGGAGTTTGTCTCTCTGGGGCTGCAAGAGGAAGGGTGGGCTG  236
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTAAGGAGTTTGTCTCTCTGGGGCTGCAAGAGGAAGGGTGGGCTG  244

seq1  TGTGCACAGGAAGGGCTGAGGCAGTAACTATGGTAAATGAACATTATGGG  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACAGGAAGGGCTGAGGCAGTAACTATGGTAAATGAACATTATGGG  294

seq1  ATGCCATAACTTCAGACTAAGCACCTGTGTGGACCCCTACAACTTAGGCT  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATAACTTCAGACTAAGCACCTGTGTGGACCCCTACAACTTAGGCT  344

seq1  AAAAATCAACCTTAAATTTCTTACAGTTTCCCCAGGTTCATCGCCAAGCT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCAACCTTAAATTTCTTACAGTTTCCCCAGGTTCATCGCCAAGCT  394

seq1  TTTAGTCTTATCCGAGAAATCAGAATTTGGGAGATTATAGTTCAATTTCT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTCTTATCCGAGAAATCAGAATTTGGGAGATTATAGTTCAATTTCT  444

seq1  CAAATAGATCAGATTCAATTGCCTGATAAATCCTTTCTGCTTTAATTCTT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGATCAGATTCAATTGCCTGATAAATCCTTTCTGCTTTAATTCTT  494

seq1  ATATAGAAAGATACCTCAAAATGACCAGCGGTAACTAGTGGGTCTTTTTT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGAAAGATACCTCAAAATGACCAGCGGTAACTAGTGGGTCTTTTTT  544

seq1  TTTTAATGATCCTGCTTTCCTTTCCCTGTGTTATAGGGAATGTAACATAA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATGATCCTGCTTTCCTTTCCCTGTGTTATAGGGAATGTAACATAA  594

seq1  AAGCGATCAGTTTGATCTTTGTTTTTACTTTCTTCAGCCCCTTTCTGTCT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGATCAGTTTGATCTTTGTTTTTACTTTCTTCAGCCCCTTTCTGTCT  644

seq1  GTAAAACTAAATTCTTCCAGGCCTATTAGAAAACATATCCCATTTCTTCA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACTAAATTCTTCCAGGCCTATTAGAAAACATATCCCATTTCTTCA  694

seq1  GTGAAGTCTTGTCTGCCTTTAGAATGGAAAAAATAAATGTCAATGGAGAT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGTCTTGTCTGCCTTTAGAATGGAAAAAATAAATGTCAATGGAGAT  744

seq1  CTTCAAATGCCTGCAATTTTGTTTTCTGACATCTCCCACAGTATGTGGGT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAATGCCTGCAATTTTGTTTTCTGACATCTCCCACAGTATGTGGGT  794

seq1  TAACTTGGGCTGATTTCCTACACCACATATGTGAGAAGGACAGACATTGT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTGGGCTGATTTCCTACACCACATATGTGAGAAGGACAGACATTGT  844

seq1  ATGTGAACTCCAAGAGTTAGAGATACAGAGGTTACCCTGCTCCACCCAAA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAACTCCAAGAGTTAGAGATACAGAGGTTACCCTGCTCCACCCAAA  894

seq1  ACTTTTGATGGAGAGACTAAGCTATACCATTGAATCTGCTCATATAGAAG  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGATGGAGAGACTAAGCTATACCATTGAATCTGCTCATATAGAAG  944

seq1  TGCTCTCACATGGAGTAAAATGACATTATCTGAATGGATATTCCAAATAA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCACATGGAGTAAAATGACATTATCTGAATGGATATTCCAAATAA  994

seq1  CCAGTGGGGTTGACCAATGCCACTGTACAATGAAGGAAACTGACGTTTGC  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGGGGTTGACCAATGCCACTGTACAATGAAGGAAACTGACGTTTGC  1044

seq1  AAGCAAAGGTTCCAATGAAGGAGCCCTGACTCAACACAGTTGAGATGCCC  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAGGTTCCAATGAAGGAGCCCTGACTCAACACAGTTGAGATGCCC  1094

seq1  TTGTGTCCAGAAGTGTTGATAGCAGAGTCCTAGTGTGGCTGAGAATTC  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCCAGAAGTGTTGATAGCAGAGTCCTAGTGTGGCTGAGAATTC  1142