BAC Information

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BAC

Clone NameB6Ng01-313I14
Chromosome1 (Build37)
Map Location 21,049,894 - 21,051,061
singlet/doubletsinglet
Overlap geneTram2
Upstream genePkhd1, Il17a, Il17f, Mcm3, Paqr8, Efhc1
Downstream geneLOC100040291, Tmem14a, Gsta3, EG632802, EG241041, LOC100040309, Ndg1, BC099381, LOC100040319, AU024076, Kcnq5, D1Mgi28, LOC435612
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313I14.bB6Ng01-313I14.g
ACCGA104722GA104723
length1,1971,141
definitionB6Ng01-313I14.b B6Ng01-313I14.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggccaatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattccaacagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaattaactcaaacaag
tcaatggcctttctctacacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagccacaaataatataaaatatctcggcg
tgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtcc
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccattaaaattccaactcaattcttc
aacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacc
gaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatca
ccatgcctgacctaaagctttactacagagcaattgtgataaaaactgca
tggtactggtatagagacagacaagtggaccaatggaatagaattgaaga
cccagaaatgaacccacacacctatggtcacttgatcttcgacaagggag
ccaaaccatccagtggaagaaagacagcatttttaacaattggtgctggc
cacaactgggttgttatcatgtagaagatgggaaatcgatccatacttat
ctccttgtactaaggtcaaatctaagtgatcagacttcacataaccagag
acactgaactatagagagagtggggaaagccttgagaattgggcacagga
aaaatctgaacgaacagccaatggcttgtgctgtaggatcggatgacaat
tgacctatggaactcagtctgcaggccaaagaacctgttcctctaga

gaattctcaccctgactcagatccatccgagactgggtggaagaatgtct
gtttgttttgtagccccaggtcactcacctcaaactcatggctgctgggg
ttaccttcttgtacgctgtataaaggttgtgtttgtgtattcaattgttg
atggctgaatgggcagagagtgagtactggccagattttgatattgttat
tcttaaggcttatcacttgcctcaggattttgaaagaaacagctgacagc
caatagctcggcaggaaagggaaggtgggactagcaggctgagagagggt
ctctgggagaagaagcagaagcaggaagattcaccagcggtatccagagg
tgatcagatatacagggatggagagggaggtgaaaaaatagttggtagag
tgtcatggactaggataatacaattaagtgacaagctagctaggaggtag
cctaagcactagtaaaaatgagtaagtctccatgtcattatttagaccgc
cagtgggtccaggaagtccccctatacatggtaatccccctatctaagtt
tcccaactggtgggattacaggtgtgtaccgtcacacccagaaagaagtc
tgtcttcactgtctcccaggaggtgctcgagaaatgcctaagaagcaaat
gagaacagttttggagactgactggaccctagactacactcagaaccatg
gtgatatacctcagaatggcccagatggctctctttctattaatctcaat
tttcctgcaatcactttaagaacataacggtacatattaggatgacaatg
gaggaagaagaggatgaagaagtggttgcttgaagaacatctggtattgt
aggctgaagaatttagatctgggggaggatcaattagtaaccgatcaaca
atgaatcatgacctatgggaaatgaaatgccacaggaggatgggttcttt
tcccacaggatccaataaaacgcacagaagctagacatggacttcaccca
ccatgagcacctccctaactcacccaaactctggtttctttttttcctat
cttttttaaaggtattaattattatgtgagtaactgtacgtcttcgaact
tcgaagaggcatcgatcatactgatggagtgtggtccatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_21049894_21051061
seq2: B6Ng01-313I14.g_68_1208

seq1  GAATTCTCACCCTGACTCAGATCCATCCGAGACTGGGTGGAAGAATGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCCTGACTCAGATCCATCCGAGACTGGGTGGAAGAATGTCT  50

seq1  GTTTGTTTTGTAGCCCCAGGTCACTCACCTCAAACTCATGGCTGCTGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTTGTAGCCCCAGGTCACTCACCTCAAACTCATGGCTGCTGGGG  100

seq1  TTACCTTCTTGTACGCTGTATAAAGGTTGTGTTTGTGTATTCAATTGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTCTTGTACGCTGTATAAAGGTTGTGTTTGTGTATTCAATTGTTG  150

seq1  ATGGCTGAATGGGCAGAGAGTGAGTACTGGCCAGATTTTGATATTGTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGAATGGGCAGAGAGTGAGTACTGGCCAGATTTTGATATTGTTAT  200

seq1  TCTTAAGGCTTATCACTTGCCTCAGGATTTTGAAAGAAACAGCTGACAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGGCTTATCACTTGCCTCAGGATTTTGAAAGAAACAGCTGACAGC  250

seq1  CAATAGCTCGGCAGGAAAGGGAAGGTGGGACTAGCAGGCTGAGAGAGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGCTCGGCAGGAAAGGGAAGGTGGGACTAGCAGGCTGAGAGAGGGT  300

seq1  CTCTGGGAGAAGAAGCAGAAGCAGGAAGATTCACCAGCGGTATCCAGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGAGAAGAAGCAGAAGCAGGAAGATTCACCAGCGGTATCCAGAGG  350

seq1  TGATCAGATATACAGGGATGGAGAGGGAGGTGAAAAAATAGTTGGTAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAGATATACAGGGATGGAGAGGGAGGTGAAAAAATAGTTGGTAGAG  400

seq1  TGTCATGGACTAGGATAATACAATTAAGTGACAAGCTAGCTAGGAGGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGGACTAGGATAATACAATTAAGTGACAAGCTAGCTAGGAGGTAG  450

seq1  CCTAAGCACTAGTAAAAATGAGTAAGTCTCCATGTCATTATTTAGACCGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGCACTAGTAAAAATGAGTAAGTCTCCATGTCATTATTTAGACCGC  500

seq1  CAGTGGGTCCAGGAAGTCCCCCTATACATGGTAATCCCCCTATCTAAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGTCCAGGAAGTCCCCCTATACATGGTAATCCCCCTATCTAAGTT  550

seq1  TCCCAACTGGTGGGATTACAGGTGTGTACCGTCACACCCAGAAAGAAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAACTGGTGGGATTACAGGTGTGTACCGTCACACCCAGAAAGAAGTC  600

seq1  TGTCTTCACTGTCTCCCAGGAGGTGCTCGAGAAATGCCTAAGAAGCAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCACTGTCTCCCAGGAGGTGCTCGAGAAATGCCTAAGAAGCAAAT  650

seq1  GAGAACAGTTTTGGAGACTGACTGGACCCTAGACTACACTCAGAACCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAGTTTTGGAGACTGACTGGACCCTAGACTACACTCAGAACCATG  700

seq1  GTGATATACCTCAGAATGGCCCAGATGGCTCTCTTTCTATTAATCTCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATATACCTCAGAATGGCCCAGATGGCTCTCTTTCTATTAATCTCAAT  750

seq1  TTTCCTGCAATCACTTTAAGAACATAACGGTACATATTAGGATGACAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGCAATCACTTTAAGAACATAACGGTACATATTAGGATGACAATG  800

seq1  GAGGAAGAAGAGGATGAAGAAGTGGTTGCTTGAAGAACATCTGGTATTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGAAGAGGATGAAGAAGTGGTTGCTTGAAGAACATCTGGTATTGT  850

seq1  AGGCTGAAGAATTTAGGATCTGGGGGAGGATCAATTAGTAACCGATCAAC  900
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGGCTGAAGAATTTA-GATCTGGGGGAGGATCAATTAGTAACCGATCAAC  899

seq1  AATGAATCATGACCTAT-GGAAATGAAATGCCACAGGAGGATGGGTTC-T  948
      ||||||||||||||||| |||||||||||||||||||||||||||||| |
seq2  AATGAATCATGACCTATGGGAAATGAAATGCCACAGGAGGATGGGTTCTT  949

seq1  TTCCCACAGGATCCAATAAAACGCACAGAAGGCCAGACATGGACTTCCAA  998
      |||||||||||||||||||||||||||||| || |||||||||||||  |
seq2  TTCCCACAGGATCCAATAAAACGCACAGAA-GCTAGACATGGACTTC--A  996

seq1  CCCACCCATGAAGCCACCCTCCCTAACTCACCCAAACTCTGGTTTTCTTT  1048
      |||| ||||| |||   ||||||||||||||||||||||||| |||||||
seq2  CCCA-CCATG-AGC--ACCTCCCTAACTCACCCAAACTCTGG-TTTCTTT  1041

seq1  TTTTCTTTATCTTTTTTTAAAAGGGTATTTATTTATTTTATGTGAGTACA  1098
      |||||  ||||||||||   || |||||| ||   | ||||||||||| |
seq2  TTTTC-CTATCTTTTTT---AAAGGTATTAAT---TATTATGTGAGTA-A  1083

seq1  CTGTAGCTGTCTTCAGACACTCCGGAGGAGGGCATCAGATCTCATTACTG  1148
      |||||   |||||| || ||| || ||   |||||| ||||    |||||
seq2  CTGTA--CGTCTTC-GA-ACTTCGAAG--AGGCATC-GATC---ATACTG  1123

seq1  ATGG-TTGTGGGCCACCATGT  1168
      ||||  |||||    ||||||
seq2  ATGGAGTGTGG---TCCATGT  1141


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