BAC Information

Click to search

BAC

Clone NameB6Ng01-313P22
Chromosome1 (Build37)
Map Location 29,323,542 - 29,324,581
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665903, Gm597, LOC435614, EG623924
Downstream geneEG433283, LOC100040665, LOC665944
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313P22.bB6Ng01-313P22.g
ACCGA105055GA105056
length1,1991,024
definitionB6Ng01-313P22.b B6Ng01-313P22.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggccatacctaagaataataaaagcaatatacagcaaaccag
tagccaacatcaaactaaatggagagaagctggaagcaatcccagtaaaa
tcatggactagacatggctacccactttctccctacctattcaacattgt
acttgaagtcctagccagagcaattcaacaaaaaaaaggaggtcaagggg
atacaaattggaaagggaggtgtcaaaatatcactatttgctgatgatgt
gatagtatatataagtgaccctaaaaattccaaacctcataaacagcttt
ggtgaagtagcttgatataaaattaactcaaacaaatcaatggcctttct
ctatacaaaggataaacaggctgaaaaagaaattatgaaaacaacaccct
tcacaatagtcacaagtaatataaaatacttgggtgtgactttaagaaaa
tgaaagatctgtatggtgagaacttcaagtctctgaagaaagaaatcaaa
gatctgagaagatggaaagatctcccatgctcatggattggcaggattaa
tatactaaaaatggctatcctgtcaaaagcaatctacagattcaatgcaa
tccccatcaaaattccaactcaattcttcagtgagttagaaagggcaatt
tgcaaattcaactggaataacaaaaaacctaggataacaaaaactattct
caatgataaaagtacctctggtggaatcaccatgcctaacctcaatctgt
actacagagcggttgtgataaaaactgcatggtactggtatagagacaga
caggtaggcctatggaatagaattgaagacccagaaatgaacccatacac
ctatgatcacttgatctttgacaagggagctaaaaccatacaatagaaaa
aaaaaaaaaaagacagcattttcaacaaatggtgctggcacaactggcag
tcaacatgtagaagaatgtgaattgatccattcttattctccttgtacat
agctcaagtctaagtggatcaaggactcacataaaacagaagacactgaa
acttatagagtagaaaatggggaaaacttctaaacatggcacagtgaaag
atctgaacagaaataccatgactgtgcctgtaaatcaagaactacatgga
actctaatgcaggcttctgtaagcaaagacacagttcataaatccggag

gaattcaatttatatacattttaattactgtttatcacctttatcattaa
aactgccttccaaaaataaaaattagtgttataaatctcttaccattaaa
ttgtgtatttatcatctggactgtaaaataacttgattttgttcaaatct
aataattgatttaggggtttaatatttggttttcttttctgttagataaa
aagtactggtgacattaatagatgtacttccaagtcctgtaaaactgaag
tttgcgatttcactattttcacagccaggtaaataataggacacataagt
tttaatcgattaaaagtattttcatttcaaatgaaatattctaattgacc
tgagactagaaatgctttgttaaccatttccaagattagtagaattcatt
ttaaaaatcatagaatattttaatatacttcaaagtatattttaactgtc
aactagtattatgcatatgctatagaaagaagccattgaactaagacaga
gctgacataatactcactgttagactcacttttattttttcagagactgt
cagtaagatgtatatatctatttaattactagattacttttagtgaatat
aaatatataacatatatattaaaatttgaagtatgatgtttagtgattta
aagagtaaaaattatagatgatttggttagattttcattctccaaagaaa
tatttactggcttccatatggaaagatatttaaattaagctaataacaac
acaaaaccaattagcacatggtgaattgactacaaagcagtgtttttcca
tagcatcaagcactgaatcttttgaacaagtacatcaagcctttgtttgt
cagttacccagcatccagctgaactatataagagtttacagttccagaat
gtgcaaaacatttctaatagttctcaactattcgatatatggaatataat
agatgttggatgagtactgcatacaagtgaaaattatatacatttaatag
cagattattttgatactatacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_29323542_29324581
seq2: B6Ng01-313P22.g_66_1089 (reverse)

seq1  TGTGTATAGTTATCCAAAAATAAATCCTTGCCTAATAAAATGTATATAAT  50
      ||||||||| ||||  ||||| ||||  |||   || |||||||||||||
seq2  TGTGTATAG-TATC--AAAAT-AATC--TGC--TATTAAATGTATATAAT  42

seq1  TTTCACTTTGTATTGCAGTACTCATCCAAACATCTTATTATATTCCATAT  100
      |||||| ||||| |||||||||||||| |||||| |||||||||||||||
seq2  TTTCAC-TTGTA-TGCAGTACTCATCC-AACATC-TATTATATTCCATAT  88

seq1  ATCGAATAGTTGAGAACTATTAGAAATTGTTTTGCACATTCTTGGAACTG  150
      |||||||||||||||||||||||||| |||||||||||||| ||||||||
seq2  ATCGAATAGTTGAGAACTATTAGAAA-TGTTTTGCACATTC-TGGAACTG  136

seq1  TAAACTCTTATTATAGTTCAGCTGGATGCTGGGTAACTGACAAACAAAGG  200
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TAAACTCTTA-TATAGTTCAGCTGGATGCTGGGTAACTGACAAACAAAGG  185

seq1  CTTGATGTACTTGTTCAAAAGATTCAGTGCTTTGATGCTATGGAAAAACA  250
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTTGATGTACTTGTTCAAAAGATTCAGTGC-TTGATGCTATGGAAAAACA  234

seq1  CTGCTTTGTAGTCAATTCACCATGTGCTAATTGGTTTTGTGTTGTTATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTGTAGTCAATTCACCATGTGCTAATTGGTTTTGTGTTGTTATTA  284

seq1  GCTTAATTTAAATATCTTTCCATATGGAAGCCAGTAAATATTTCTTTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAATTTAAATATCTTTCCATATGGAAGCCAGTAAATATTTCTTTGGA  334

seq1  GAATGAAAATCTAACCAAATCATCTATAATTTTTACTCTTTAAATCACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAAAATCTAACCAAATCATCTATAATTTTTACTCTTTAAATCACTA  384

seq1  AACATCATACTTCAAATTTTAATATATATGTTATATATTTATATTCACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCATACTTCAAATTTTAATATATATGTTATATATTTATATTCACTA  434

seq1  AAAGTAATCTAGTAATTAAATAGATATATACATCTTACTGACAGTCTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAATCTAGTAATTAAATAGATATATACATCTTACTGACAGTCTCTG  484

seq1  AAAAAATAAAAGTGAGTCTAACAGTGAGTATTATGTCAGCTCTGTCTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAAAAGTGAGTCTAACAGTGAGTATTATGTCAGCTCTGTCTTAG  534

seq1  TTCAATGGCTTCTTTCTATAGCATATGCATAATACTAGTTGACAGTTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGGCTTCTTTCTATAGCATATGCATAATACTAGTTGACAGTTAAA  584

seq1  ATATACTTTGAAGTATATTAAAATATTCTATGATTTTTAAAATGAATTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTTTGAAGTATATTAAAATATTCTATGATTTTTAAAATGAATTCT  634

seq1  ACTAATCTTGGAAATGGTTAACAAAGCATTTCTAGTCTCAGGTCAATTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATCTTGGAAATGGTTAACAAAGCATTTCTAGTCTCAGGTCAATTAG  684

seq1  AATATTTCATTTGAAATGAAAATACTTTTAATCGATTAAAACTTATGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTCATTTGAAATGAAAATACTTTTAATCGATTAAAACTTATGTGT  734

seq1  CCTATTATTTACCTGGCTGTGAAAATAGTGAAATCGCAAACTTCAGTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTATTTACCTGGCTGTGAAAATAGTGAAATCGCAAACTTCAGTTTT  784

seq1  ACAGGACTTGGAAGTACATCTATTAATGTCACCAGTACTTTTTATCTAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACTTGGAAGTACATCTATTAATGTCACCAGTACTTTTTATCTAAC  834

seq1  AGAAAAGAAAACCAAATATTAAACCCCTAAATCAATTATTAGATTTGAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAAAACCAAATATTAAACCCCTAAATCAATTATTAGATTTGAAC  884

seq1  AAAATCAAGTTATTTTACAGTCCAGATGATAAATACACAATTTAATGGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAAGTTATTTTACAGTCCAGATGATAAATACACAATTTAATGGTA  934

seq1  AGAGATTTATAACACTAATTTTTATTTTTGGAAGGCAGTTTTAATGATAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTTATAACACTAATTTTTATTTTTGGAAGGCAGTTTTAATGATAA  984

seq1  AGGTGATAAACAGTAATTAAAATGTATATAAATTGAATTC  1040
      ||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGATAAACAGTAATTAAAATGTATATAAATTGAATTC  1024


| Home | SequenceCutter | Blast | Download |