BAC Information

Click to search

BAC

Clone NameB6Ng01-314O24
Chromosome1 (Build37)
Map Location 173,288,954 - 173,483,033
singlet/doubletdoublet
Overlap gene1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna
Upstream geneNos1ap, LOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2
Downstream geneCd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314O24.bB6Ng01-314O24.g
ACCGA105719GA105720
length1,1091,085
definitionB6Ng01-314O24.b B6Ng01-314O24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(173,288,954 - 173,290,075)(173,481,950 - 173,483,033)
sequence
gaattccaggatgcaaacctgtgggctagctgtcctgccgtcctcaccaa
aacccccaaccaaataaagctggtcattccaaaggcaagtccgatggccc
acgcgcttcagtccacggtctgtactggggaagtggaaccacagaggcgg
agacttgcctgtgggttgagagcagaaggtggttactgtggcattctgct
ccggccttacccagtacgcatgcctgtcatcgttcccgtttgatttgtca
gccttttcagatgttcagtatttatattgtctattgtattttgtttttga
aacagggtctcactctgtcaccctggctagtttcacactctagatcaagt
tggctggcctcaaaaactaccagagatctgcctgcctctgcctctgcctc
ccaagtgctggaattaaaagtgtgaatcactatgcctggctctatttttt
gtttgtttgtttttcagcagtccacacacttttgcctcctgagtagcata
catcaccacaaccggactgcattcctttaactcatcaactgatttctcct
cctttctatcccaccacccctgttttgtaatttttagctgtgtctttttc
tcctccctttcaaatgatagcttggcgctcacgggtatcgtagatgtaga
gatcattgcagatcgtatctctagctctggtcagagtttctccgccaaat
agtacagcgaagggtcccaccactgaacaggaatgatggcgcagctctgg
ggtccttgctgcagtccctgcccactgctcacaagccttgcaagctgttc
cctcaaatgaggggcaactggttgttcctccttgggcgagaaaaacaaga
aaggggttgtctgaagggttgcttattgaagttttagtccttttctactt
tatgtgagtagctaataccttgattttcccagggctccattgcctgctac
ctccggtccactgagttgcagccccaaagagcaaaagctgatgacccggg
tgcgccagcagtgcagcagggcagcacagtgtcctgatcgtgagtgtgtg
gccagccttcctctttgtagctgtgtacacagaaatccggcctgagttgg
ttttctgaa
gaattccacacccctaagccccttaacccataaaaacccctagcttccta
gcctcgtggccgatatccattatctcctgtgggggatgcatgtcggtccg
gagctctgtcattaaacgacctcatgtaattacatcaaggccttttcgtg
attctttgggtgcccgccgaatcaggaattgagtgtggggttccccacta
ggttctatcaaaacagagtgtcttcaagcaatacttggggcagcaagtag
cctagagcaactgcatctgggcctgggagcactaatcctgggagcatctc
tgcctgtgcctgtgcctgcacctgggagggaaacacagagtgcagctcac
agcatggctcatcttagaattctgacctgggaaacttgccactcctagct
ccagccaagaagcagccctgaatattcagaactcatgatccatggatggc
actagcagcatggggtaaaaatgagatgaatagctgtatgttagaatcac
acaaaagtcgaataaaagacctgtgtcaaatgtcaagaaaaaatgtatca
ataaagtaccttgtacaggttaaagacaataaagtagctggagagatggc
tcttcaggtcaagactgctgcctccaagccgagttacctgagtttgattc
taggagccactaagttgaaatccgacctttactcacaagccttagtacgc
ccacacaccaaaaacgtaactttaaaaataaataagacaaatataaattt
gttttacacatttgtactcttatactttatggactcaaatttgatttagt
aacatcatattctcaagtttctatattctgagattgacatattattaata
taccaaagcactttcaaagatccacacatatacaacacacacacactgac
ttctgggtacttgattgcctgctttgtaaattatatggactttcaaagtt
ctaagtataattgaacagtgaagttttaataataaaggtacttgtatggg
ccttgttccttcagctctttccactgtgcctccccagagccctaaaacac
aacggtacacacaaatcaggagttcagtatcatcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_173288954_173290075
seq2: B6Ng01-314O24.b_48_1156

seq1  GAATTCCAGGATGCAAACCTGTGGGCTAGCTGTCCTGCCGTCCTCACCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGATGCAAACCTGTGGGCTAGCTGTCCTGCCGTCCTCACCAA  50

seq1  AACCCCCAACCAAATAAAGCTGGTCATTCCAAAGGCAAGTCCGATGGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCCAACCAAATAAAGCTGGTCATTCCAAAGGCAAGTCCGATGGCCC  100

seq1  ACGCGCTTCAGTCCACGGTCTGTACTGGGGAAGTGGAACCACAGAGGCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCGCTTCAGTCCACGGTCTGTACTGGGGAAGTGGAACCACAGAGGCGG  150

seq1  AGACTTGCCTGTGGGTTGAGAGCAGAAGGTGGTTACTGTGGCATTCTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGCCTGTGGGTTGAGAGCAGAAGGTGGTTACTGTGGCATTCTGCT  200

seq1  CCGGCCTTACCCAGTACGCATGCCTGTCATCGTTCCCGTTTGATTTGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCCTTACCCAGTACGCATGCCTGTCATCGTTCCCGTTTGATTTGTCA  250

seq1  GCCTTTTCAGATGTTCAGTATTTATATTGTCTATTGTATTTTGTTTTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTCAGATGTTCAGTATTTATATTGTCTATTGTATTTTGTTTTTGA  300

seq1  AACAGGGTCTCACTCTGTCACCCTGGCTAGTTTCACACTCTAGATCAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGTCTCACTCTGTCACCCTGGCTAGTTTCACACTCTAGATCAAGT  350

seq1  TGGCTGGCCTCAAAAACTACCAGAGATCTGCCTGCCTCTGCCTCTGCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGCCTCAAAAACTACCAGAGATCTGCCTGCCTCTGCCTCTGCCTC  400

seq1  CCAAGTGCTGGAATTAAAAGTGTGAATCACTATGCCTGGCTCTATTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGCTGGAATTAAAAGTGTGAATCACTATGCCTGGCTCTATTTTTT  450

seq1  GTTTGTTTGTTTTTCAGCAGTCCACACACTTTTGCCTCCTGAGTAGCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGTTTTTCAGCAGTCCACACACTTTTGCCTCCTGAGTAGCATA  500

seq1  CATCACCACAACCGGACTGCATTCCTTTAACTCATCAACTGATTTCTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACCACAACCGGACTGCATTCCTTTAACTCATCAACTGATTTCTCCT  550

seq1  CCTTTCTATCCCACCACCCCTGTTTTGTAATTTTTAGCTGTGTCTTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTATCCCACCACCCCTGTTTTGTAATTTTTAGCTGTGTCTTTTTC  600

seq1  TCCTCCCTTTCAAATGATAGCTTGGCGCTCACGGGTATCGTAGATGTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCTTTCAAATGATAGCTTGGCGCTCACGGGTATCGTAGATGTAGA  650

seq1  GATCATTGCAGATCGTATCTCTAGCTCTGGTCAGAGTTTCTCCGCCAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATTGCAGATCGTATCTCTAGCTCTGGTCAGAGTTTCTCCGCCAAAT  700

seq1  AGTACAGCGAAGGGTCCCACCACTGAACAGGAATGATGGCGCAGGCTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGTACAGCGAAGGGTCCCACCACTGAACAGGAATGATGGCGCA-GCTCTG  749

seq1  GGGTCCTTGCTGCAGTCCCTGCCCACTGCTCACAAGCCTTGCAAGCTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCTTGCTGCAGTCCCTGCCCACTGCTCACAAGCCTTGCAAGCTGTT  799

seq1  CCCTCAAATGAGGGGCAACTGGTTGTTCCTCCTTGGGCGAGAAAAACAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAAATGAGGGGCAACTGGTTGTTCCTCCTTGGGCGAGAAAAACAAG  849

seq1  -AAGGGGTTGTCTGAAGGGTTTGCTTATTGAAGTTTTAGTCCTTTTCTAC  899
       |||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAAGGGGTTGTCTGAAGGG-TTGCTTATTGAAGTTTTAGTCCTTTTCTAC  898

seq1  TTTATGTGAGTAGCTAATACCTTGATTTTCCCAGGGCTCCATTGCCCTGC  949
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTATGTGAGTAGCTAATACCTTGATTTTCCCAGGGCTCCATTG-CCTGC  947

seq1  TACCTCCGGTCCAACTGAGTTGCAGCCCCCAAAGAGCAAAAGCTGATGAC  999
      |||||||||||| |||||||||||| ||||||||||||||||||||||||
seq2  TACCTCCGGTCC-ACTGAGTTGCAG-CCCCAAAGAGCAAAAGCTGATGAC  995

seq1  CCGGGTGCGGCCCAGCAGTTGGCAGCAGGGCAGCACAGTGGCCTGATCGT  1049
      |||||||||  ||||||||  ||||||||||||||||||| |||||||||
seq2  CCGGGTGCG--CCAGCAGT--GCAGCAGGGCAGCACAGTGTCCTGATCGT  1041

seq1  GAGGTTGTGTGG-CAGCCTTCTTCTTTGTAGCTGTTGGTACACAGAAAAT  1098
      |||  ||||||| |||||||| |||||||||||||  |||||||| ||||
seq2  GAG--TGTGTGGCCAGCCTTCCTCTTTGTAGCTGT--GTACACAG-AAAT  1086

seq1  CGGGCCTGAGTTTGGTTTTCTGAA  1122
      | |||||||| |||||||||||||
seq2  CCGGCCTGAG-TTGGTTTTCTGAA  1109

seq1: chr1_173481950_173483033
seq2: B6Ng01-314O24.g_64_1148 (reverse)

seq1  CGATGATACTGAACTCTGG--TTGTGTGTAC--GTGTGTTTTAGGGCTCT  46
      ||||||||||||||||  |  ||||||||||   ||||||||||||||||
seq2  CGATGATACTGAACTCCTGATTTGTGTGTACCGTTGTGTTTTAGGGCTCT  50

seq1  GGGGAGGCACAGTGGAAAGAGCTGAAGGGAACAAGGGCCCATACAAGTTA  96
      |||||||||||||||||||||||||| ||||||| |||||||||||||  
seq2  GGGGAGGCACAGTGGAAAGAGCTGAA-GGAACAA-GGCCCATACAAGTAC  98

seq1  CTTTATTATTAAAACTTCACTTGTTCAATTATACTTAGAACTTTGAAAGT  146
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTTTATTATTAAAACTTCAC-TGTTCAATTATACTTAGAACTTTGAAAGT  147

seq1  CCATATAATTTACAAAGCAGGCAATCAAGTACCCAGAAGTCAGTGTGTGT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATAATTTACAAAGCAGGCAATCAAGTACCCAGAAGTCAGTGTGTGT  197

seq1  GTGTTGTATATGTGTGGATCTTTGAAAGTGCTTTGGTATATTAATAATAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGTATATGTGTGGATCTTTGAAAGTGCTTTGGTATATTAATAATAT  247

seq1  GTCAATCTCAGAATATAGAAACTTGAGAATATGATGTTACTAAATCAAAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATCTCAGAATATAGAAACTTGAGAATATGATGTTACTAAATCAAAT  297

seq1  TTGAGTCCATAAAGTATAAGAGTACAAATGTGTAAAACAAATTTATATTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCCATAAAGTATAAGAGTACAAATGTGTAAAACAAATTTATATTT  347

seq1  GTCTTATTTATTTTTAAAGTTACGTTTTTGGTGTGTGGGCGTACTAAGGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATTTATTTTTAAAGTTACGTTTTTGGTGTGTGGGCGTACTAAGGC  397

seq1  TTGTGAGTAAAGGTCGGATTTCAACTTAGTGGCTCCTAGAATCAAACTCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGTAAAGGTCGGATTTCAACTTAGTGGCTCCTAGAATCAAACTCA  447

seq1  GGTAACTCGGCTTGGAGGCAGCAGTCTTGACCTGAAGAGCCATCTCTCCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACTCGGCTTGGAGGCAGCAGTCTTGACCTGAAGAGCCATCTCTCCA  497

seq1  GCTACTTTATTGTCTTTAACCTGTACAAGGTACTTTATTGATACATTTTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTTTATTGTCTTTAACCTGTACAAGGTACTTTATTGATACATTTTT  547

seq1  TCTTGACATTTGACACAGGTCTTTTATTCGACTTTTGTGTGATTCTAACA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGACATTTGACACAGGTCTTTTATTCGACTTTTGTGTGATTCTAACA  597

seq1  TACAGCTATTCATCTCATTTTTACCCCATGCTGCTAGTGCCATCCATGGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTATTCATCTCATTTTTACCCCATGCTGCTAGTGCCATCCATGGA  647

seq1  TCATGAGTTCTGAATATTCAGGGCTGCTTCTTGGCTGGAGCTAGGAGTGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGTTCTGAATATTCAGGGCTGCTTCTTGGCTGGAGCTAGGAGTGG  697

seq1  CAAGTTTCCCAGGTCAGAATTCTAAGATGAGCCATGCTGTGAGCTGCACT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTCCCAGGTCAGAATTCTAAGATGAGCCATGCTGTGAGCTGCACT  747

seq1  CTGTGTTTCCCTCCCAGGTGCAGGCACAGGCACAGGCAGAGATGCTCCCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTTCCCTCCCAGGTGCAGGCACAGGCACAGGCAGAGATGCTCCCA  797

seq1  GGATTAGTGCTCCCAGGCCCAGATGCAGTTGCTCTAGGCTACTTGCTGCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAGTGCTCCCAGGCCCAGATGCAGTTGCTCTAGGCTACTTGCTGCC  847

seq1  CCAAGTATTGCTTGAAGACACTCTGTTTTGATAGAACCTAGTGGGGAACC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTATTGCTTGAAGACACTCTGTTTTGATAGAACCTAGTGGGGAACC  897

seq1  CCACACTCAATTCCTGATTCGGCGGGCACCCAAAGAATCACGAAAAGGCC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTCAATTCCTGATTCGGCGGGCACCCAAAGAATCACGAAAAGGCC  947

seq1  TTGATGTAATTACATGAGGTCGTTTAATGACAGAGCTCCGGACCGACATG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTAATTACATGAGGTCGTTTAATGACAGAGCTCCGGACCGACATG  997

seq1  CATCCCCCACAGGAGATAATGGATATCGGCCACGAGGCTAGGAAGCTAGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCCACAGGAGATAATGGATATCGGCCACGAGGCTAGGAAGCTAGG  1047

seq1  GGTTTTTATGGGTTAAGGGGCTTAGGGGTGTGGAATTC  1084
      ||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTATGGGTTAAGGGGCTTAGGGGTGTGGAATTC  1085