BAC Information

Click to search

BAC

Clone NameB6Ng01-315H22
Chromosome1 (Build37)
Map Location 78,071,915 - 78,169,570
singlet/doubletdoublet
Overlap genePax3
Upstream geneEpha4, LOC100039330
Downstream geneLOC100039210, Sgpp2, LOC100039382, Farsb, Mogat1, Acsl3, Utp14b, LOC620521, Kcne4, LOC100039260, EG545332
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315H22.bB6Ng01-315H22.g
ACCGA106132GA106133
length4721,041
definitionB6Ng01-315H22.b B6Ng01-315H22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,071,915 - 78,072,393)(78,168,518 - 78,169,570)
sequence
aagagagaattaacagcaaaggaaaaccattttagaaacgacggctgaac
tagatgaacacaagaccccggagacacaacaaagatgctttatgagaaat
agaggaggaaggggggaaaggtctttggggacacctggcacagccacacc
ccaacagtcagctcttccgctgcccagcagcatcgtctggggctggtgtt
ttggctccctctggtggcgcagttcaaatgctgcttcaaactgggaggtt
ttgacttaaccctgctccagagacatgtcattaattctgctctgctgtgt
tcccctgtgcagggtagcctcggcgatacatgctggggtagggtggggtg
ggtaacatggaaccattaaagaaagagcaatcacaccatgtccaacccag
taaaatggctagtgtttaaaatgaaaggtgatgtttgagcaacatggcat
gcgattcttaagtgggaggaag
gaattcactcgaggggcagggaattctggctgtctggattggcttctgtt
ataatgatgggcactgcttagccagggaagtaaatccaggtgcgactttt
aaaacatcctggcatctgctttgttttgttgaagttgcagttttcttttt
tttctgctgtcgtcccaagaaatactaaactatctaaaagggacaatatg
tttcttaagagacaccccccccccaagagacaaacaaacaaggaaagaaa
aagacgccataacagaagtgttgggaccatccagcagtagtctttgctag
gctttgcatccttgtaactgcaacggaatattcctttaggagacttaaaa
gcaaggatggatcaggggctgaagtttggcattccttcatttcttccccc
acattcttttgtttacttgacacccagctttgcagacacctctgatgtga
ccagtggacactttcggggagggaagtgtttctctaaccagcagccagag
ttttaattaaatagtgtccatcttgcctacctcaatccagcagctgaaga
aatagctgttggcattaaggtcctggagaacgaacttacgtactctggtg
ttaatggggcaagggacgttcctggcgattaaagaagacagaaaaagata
agctttactccctgcccccagcacgccagtgtcatgtggttattattatt
gtttgaaataaaaaggagaatcatagcgtaacagttgtgtgctattcgcc
tcgtgtgagaggacgtgcaggttggaaaacttattttgtttattaattct
gctcccacgtcccaccaggctggctcgagagagaggaaggagaggtgtag
ctttaagcacaccctgaatttgttcttattacataacaaaggtccattct
tatcatgttatcattcccgtaataaaaattagctacaatacagcatcaac
tgaaaacccctcagtccaggattttctttcacatgaacatgaatactgtt
cagaaatacaacagtcagagatacttaggtctgaaagagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_78071915_78072393
seq2: B6Ng01-315H22.b_43_519

seq1  GAATTCAAGAGAGAATTAACAGCAAAGGAAAACCATTTTAGAAACGACGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAGAGAATTAACAGCAAAGGAAAACCATTTTAGAAACGACGG  50

seq1  CTGAACTAGATGAACACAAGACCCCGGAGACACAACAAAGATGCTTTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTAGATGAACACAAGACCCCGGAGACACAACAAAGATGCTTTATG  100

seq1  AGAAATAGAGGAGGAAGGGGGGAAAGGTCTTTTGTGTGAACTGGGAAGGT  150
      |||||||||||||||||||||||||||||||| | |  | |||| |    
seq2  AGAAATAGAGGAGGAAGGGGGGAAAGGTCTTTGGGGACACCTGGCA----  146

seq1  GAAGTCA-ACTTTAAAAGTTAAAAGTT--------TAAAAGTTAAAAGTC  191
        || || ||   || ||| |    ||         |  ||   |  |||
seq2  -CAGCCACACCCCAACAGTCAGCTCTTCCGCTGCCCAGCAG--CATCGTC  193

seq1  ---AGCTTAAAAGTTTTTAAAGAAGCTAACAAACATACTGAAGGTAAGCA  238
          |||     || |||      |||  |     |   | || |   ||
seq2  TGGGGCT----GGTGTTT----TGGCTCCCTCTGGTGGCGCAGTT---CA  232

seq1  AAGG--GGATCCCAC--GGAGG---TGAGACAACGCT-CTGCAGAAGAAA  280
      || |  |  ||  ||  |||||   |||   ||| || || ||| ||| |
seq2  AATGCTGCTTCAAACTGGGAGGTTTTGACTTAACCCTGCTCCAG-AGACA  281

seq1  GCTGGGGTAGGGAGTGGAATGAGCATTTT--AAAACTGTAAT----TCTG  324
                    ||  || |  ||| |      ||||  |    | ||
seq2  --------------TGTCATTA--ATTCTGCTCTGCTGTGTTCCCCTGTG  315

seq1  CA----AACATTCCTAATAGAAAAT-GTGTAAGATTCCCAGG--AACATG  367
      ||    | | |     ||| |   | | ||| | |     ||  ||||||
seq2  CAGGGTAGCCTCGGCGATACATGCTGGGGTAGGGTGGGGTGGGTAACATG  365

seq1  GAACCATTAAAGAAAGAGCAATCACACCATGTCCAACCCAGTAAAATGGC  417
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCATTAAAGAAAGAGCAATCACACCATGTCCAACCCAGTAAAATGGC  415

seq1  TAGTGTTTAAAGTGAAAGGTGATGTGTGAGCCACAAGGCATGCGATTTTT  467
      ||||||||||| ||||||||||||| ||||| ||| ||||||||||| ||
seq2  TAGTGTTTAAAATGAAAGGTGATGTTTGAGCAACATGGCATGCGATTCTT  465

seq1  AAGTGGGAGGAA  479
      ||||||||||||
seq2  AAGTGGGAGGAA  477

seq1: chr1_78168518_78169570
seq2: B6Ng01-315H22.g_64_1104 (reverse)

seq1  TTCTCTTTCAGACCTAAAGTTATCCTCTGACTGTTTGTATTTCTGAACAG  50
      |||||||||||||||||   ||| ||||||||| ||||||||||||||||
seq2  TTCTCTTTCAGACCTAA--GTAT-CTCTGACTG-TTGTATTTCTGAACAG  46

seq1  TATTCATGTTCATTGTGAAAGAAAATCCCCTGGACTTGGAGGGGTTTTCA  100
      |||||||||||| |||||||||||||  ||||||||  ||||||||||| 
seq2  TATTCATGTTCA-TGTGAAAGAAAAT--CCTGGACT--GAGGGGTTTTC-  90

seq1  AGTTGATGCTGTTATTGTAGCTAATTTTTATTAACGGAATGATAACATGA  150
      ||||||||||| |||||||||||||||||||||  |||||||||||||||
seq2  AGTTGATGCTG-TATTGTAGCTAATTTTTATTACGGGAATGATAACATGA  139

seq1  TAAAGAAATGGACCTTTGTTATGTAATAAGAACAAA-TCAGGGTGTGCTT  199
      |||   |||||||||||||||||||||||||||||| |||||||||||||
seq2  TAA--GAATGGACCTTTGTTATGTAATAAGAACAAATTCAGGGTGTGCTT  187

seq1  AAAGCTACACCTCTCCTTCCTCTCTCTCGAGCCAGCCTGGTGGGACGTGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTACACCTCTCCTTCCTCTCTCTCGAGCCAGCCTGGTGGGACGTGG  237

seq1  GAGCAGAATTAATAAACAAAATAAGTTTTCCAACCTGCACGTCCTCTCAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGAATTAATAAACAAAATAAGTTTTCCAACCTGCACGTCCTCTCAC  287

seq1  ACGAGGCGAATAGCACACAACTGTTACGCTATGATTCTCCTTTTTATTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGGCGAATAGCACACAACTGTTACGCTATGATTCTCCTTTTTATTTC  337

seq1  AAACAATAATAATAACCACATGACACTGGCGTGCTGGGGGCAGGGAGTAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATAATAATAACCACATGACACTGGCGTGCTGGGGGCAGGGAGTAA  387

seq1  AGCTTATCTTTTTCTGTCTTCTTTAATCGCCAGGAACGTCCCTTGCCCCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTATCTTTTTCTGTCTTCTTTAATCGCCAGGAACGTCCCTTGCCCCA  437

seq1  TTAACACCAGAGTACGTAAGTTCGTTCTCCAGGACCTTAATGCCAACAGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACCAGAGTACGTAAGTTCGTTCTCCAGGACCTTAATGCCAACAGC  487

seq1  TATTTCTTCAGCTGCTGGATTGAGGTAGGCAAGATGGACACTATTTAATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTCAGCTGCTGGATTGAGGTAGGCAAGATGGACACTATTTAATT  537

seq1  AAAACTCTGGCTGCTGGTTAGAGAAACACTTCCCTCCCCGAAAGTGTCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCTGGCTGCTGGTTAGAGAAACACTTCCCTCCCCGAAAGTGTCCA  587

seq1  CTGGTCACATCAGAGGTGTCTGCAAAGCTGGGTGTCAAGTAAACAAAAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCACATCAGAGGTGTCTGCAAAGCTGGGTGTCAAGTAAACAAAAGA  637

seq1  ATGTGGGGGAAGAAATGAAGGAATGCCAAACTTCAGCCCCTGATCCATCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGGGAAGAAATGAAGGAATGCCAAACTTCAGCCCCTGATCCATCC  687

seq1  TTGCTTTTAAGTCTCCTAAAGGAATATTCCGTTGCAGTTACAAGGATGCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTTAAGTCTCCTAAAGGAATATTCCGTTGCAGTTACAAGGATGCA  737

seq1  AAGCCTAGCAAAGACTACTGCTGGATGGTCCCAACACTTCTGTTATGGCG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTAGCAAAGACTACTGCTGGATGGTCCCAACACTTCTGTTATGGCG  787

seq1  TCTTTTTCTTTCCTTGTTTGTTTGTCTCTTGGGGGGGGGGTGTCTCTTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCTTTCCTTGTTTGTTTGTCTCTTGGGGGGGGGGTGTCTCTTAA  837

seq1  GAAACATATTGTCCCTTTTAGATAGTTTAGTATTTCTTGGGACGACAGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATATTGTCCCTTTTAGATAGTTTAGTATTTCTTGGGACGACAGCA  887

seq1  GAAAAAAAAGAAAACTGCAACTTCAACAAAACAAAGCAGATGCCAGGATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAGAAAACTGCAACTTCAACAAAACAAAGCAGATGCCAGGATG  937

seq1  TTTTAAAAGTCGCACCTGGATTTACTTCCCTGGCTAAGCAGTGCCCATCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAGTCGCACCTGGATTTACTTCCCTGGCTAAGCAGTGCCCATCA  987

seq1  TTCTAACAGAAGCCAATCCAGACAGCCAGAATTCACTGCCCCTCGAGTGA  1049
      || ||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTATAACAGAAGCCAATCCAGACAGCCAGAATTCCCTGCCCCTCGAGTGA  1037

seq1  ATTC  1053
      ||||
seq2  ATTC  1041