BAC Information

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BAC

Clone NameB6Ng01-316C20
Chromosome1 (Build37)
Map Location 161,494,424 - 161,645,636
singlet/doubletdoublet
Overlap geneTnr
Upstream geneAstn1, Pappa2, 4930562F17Rik, EG240853, LOC664972, Rfwd2, EG620484
Downstream gene4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp, Rabgap1l, Gpr52
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316C20.bB6Ng01-316C20.g
ACCGA106637GA106638
length1,1621,113
definitionB6Ng01-316C20.b B6Ng01-316C20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(161,644,453 - 161,645,636)(161,494,424 - 161,495,533)
sequence
gaattctttatagggaagaaaagcttaaatgtatacagagataatcacaa
agggaggggttgtcacagtagttttcaagaagggaagcaggtgcctattt
agaagagcagacaaaggactcagagaagaggaagcccccaaagcaacaat
ctgtttcgagacatggggaaaactctggatgcctctaaagaatgaagtgt
aagtatcactgtcaataggaaggcagtgtagaaatcttccatttttccta
ccttcacatccaggcatactacaccagctacactctggacttgaggatgt
ctacttctgctagcatcggatatggggagactaatgacaacaggggtact
gagtacaattcgtatgctgaactatggccctctgcctccaacacaggacc
ttgtccaaggaagaaggctcagattgttctctgggaaaaaaatggaactg
gcacttcatcttcccacctcctctccactcagtatcactgtacactcgtg
tgagcatgtgcacacacagccttaattggctcttttatattattcatagt
tgaagtgtaaacagaaaataatcagacttttgagatctttgtagagaagc
tatacaaagaaacaaagaaacaagagttgaaacaggagacttagggaata
ggggtgaaaaccctatgcaaaaaaaaaaaaaataacatttaataggatgt
tgtttgtaaagggaatattaaagaataagaaaaatattcttgggtattaa
agattgaaatatgaagggaaaactttaaaatcatcaggatatataaaaca
taacagtgatatgatcttccagtaagaaatacacaaaagatggaaaacag
aaaaagatgagaacagggctaccttgccagcggagttgcctgacacccgc
aagggcccacacaggattccccacgggatcctaagacctctggtgagtga
acacagcgccggcccaaatccaattgcgcggaacctgagactgcgtacat
aggaagcagactaccgggctgactggggcacaagcccttccgctccactc
gagcccggcctactttgcaagtgaagtcgctgaatccgcatgtcccacac
agaatccacaagatctaagaccttattgagtgaccactctgccagagtcc
ggttcgaacacc

gaattccaggcctttttttttgtctcttttctcttctttttcttttttgt
ttccatgtgtgaggaataatatggcatatttggttttgtgggtttcattt
gtttgctcaccgatatatcctctgtgccatcagcttttcagcttgatgtt
ataacccacagccttctgctttgtgttgttgttgttgttgttgttgttgt
catcgtcgtcgtcgcccacctggtagattaaacacaatgatttctggaag
ttttaatttgcactttttcctgatggctagttatatttacttgtattctt
tattttatgtcttttttcatctttctattggctggtttattgatttgtag
ttcaagaagacttctctgatgacagatctatatgtaaagcttcattaaga
tgataggaatagccaggtataaactaagtctacatcctaccctagctata
aatgcagaggttatgaaattcaaacattttatagacatttattcaggaaa
tagtcatagaaacataaacattgattcattcacttagtgagcaatctttt
aattgaacgatgcctctgaaccaagcactgtgcaagatataaaaaaagac
tattaagatttggagagtgtaaagaaacattacagattacagaagggttg
gtggagatcttacatacgacaaagtgctattaacctttacagtaaattga
tatgtaatgaatgtgttactaattgtttccaattgcagttgccaacaggc
ctctactaaaaatatgccgactttcaatgaactaacccaagaatctgcca
acataaatatttttaaagcttatggattattatcctttcaagaggagaaa
ttacccttggaagatatttattttggtcttctcctcctcctttctttttt
cccccttttcttttccctttccttaaaaaaaaaacttaaacaattttctt
tggaatgtcaaaatatgggtgctttcatacagagcagatgctgagattat
gggtggattattttgggatgccatattggagcaagatgcttgtcttgtgc
tagcagactgaccatttggaaatatgggtgctttttaaatgagctgaagg
cttttaggtgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_161644453_161645636
seq2: B6Ng01-316C20.b_48_1209 (reverse)

seq1  GGTGTTCGAACCGGACTCCTGGCAGAAGTTGTGTTCCACTCACTAGAGGT  50
      ||||||||||||||||| ||||||||    ||| | |||||| || ||||
seq2  GGTGTTCGAACCGGACT-CTGGCAGA----GTGGT-CACTCAATA-AGGT  43

seq1  CTTAGGATCCCTTGTGGAATCCTGTGTGGGCCCTTGCGGGTGTCAGGCGA  100
      |||| |||  ||||||| || |||||||||  | ||||| | ||| ||||
seq2  CTTA-GAT--CTTGTGG-ATTCTGTGTGGG-ACATGCGGAT-TCA-GCGA  86

seq1  CTCCACTGGCAAGGTAGCCCGGGGCTCGAGTGGAGCGGAAGGGGCTTGTG  150
      || |||| |||| |||| || ||||||||||||||||||| |||||||||
seq2  CTTCACTTGCAAAGTAGGCC-GGGCTCGAGTGGAGCGGAA-GGGCTTGTG  134

seq1  CCCCAGGTCAGGCCCGGGTAGTCTGCTTCCCTATGTACCGCAGTCTCAGG  200
      ||||| |||||  || |||||||||||| |||||||| ||||||||||||
seq2  CCCCA-GTCAG--CCCGGTAGTCTGCTT-CCTATGTA-CGCAGTCTCAGG  179

seq1  TTCCGCGCAATTGGATTGGGGCCGGCGCTGTGTTCCACTCACCAGAGGTC  250
      ||||||||||||||||| |||||||||||||||| |||||||||||||||
seq2  TTCCGCGCAATTGGATTTGGGCCGGCGCTGTGTT-CACTCACCAGAGGTC  228

seq1  TTAGGATCCCGTGGGGAATCCTGTGTGGGCCCTTGCGGGTGTCAGGCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGATCCCGTGGGGAATCCTGTGTGGGCCCTTGCGGGTGTCAGGCAAC  278

seq1  TCCGCTGGCAAGGTAGCCCTGTTCTCATCTTTTTCTGTTTTCCATCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCTGGCAAGGTAGCCCTGTTCTCATCTTTTTCTGTTTTCCATCTTTT  328

seq1  GTGTATTTCTTACTGGAAGATCATATCACTGTTATGTTTTATATATCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTTCTTACTGGAAGATCATATCACTGTTATGTTTTATATATCCTG  378

seq1  ATGATTTTAAAGTTTTCCCTTCATATTTCAATCTTTAATACCCAAGAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTTAAAGTTTTCCCTTCATATTTCAATCTTTAATACCCAAGAATA  428

seq1  TTTTTCTTATTCTTTAATATTCCCTTTACAAACAACATCCTATTAAATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTATTCTTTAATATTCCCTTTACAAACAACATCCTATTAAATGT  478

seq1  TATTTTTTTTTTTTTTGCATAGGGTTTTCACCCCTATTCCCTAAGTCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTTTTTTTTTGCATAGGGTTTTCACCCCTATTCCCTAAGTCTCC  528

seq1  TGTTTCAACTCTTGTTTCTTTGTTTCTTTGTATAGCTTCTCTACAAAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCAACTCTTGTTTCTTTGTTTCTTTGTATAGCTTCTCTACAAAGAT  578

seq1  CTCAAAAGTCTGATTATTTTCTGTTTACACTTCAACTATGAATAATATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAGTCTGATTATTTTCTGTTTACACTTCAACTATGAATAATATAA  628

seq1  AAGAGCCAATTAAGGCTGTGTGTGCACATGCTCACACGAGTGTACAGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCAATTAAGGCTGTGTGTGCACATGCTCACACGAGTGTACAGTGA  678

seq1  TACTGAGTGGAGAGGAGGTGGGAAGATGAAGTGCCAGTTCCATTTTTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGTGGAGAGGAGGTGGGAAGATGAAGTGCCAGTTCCATTTTTTTC  728

seq1  CCAGAGAACAATCTGAGCCTTCTTCCTTGGACAAGGTCCTGTGTTGGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAACAATCTGAGCCTTCTTCCTTGGACAAGGTCCTGTGTTGGAGG  778

seq1  CAGAGGGCCATAGTTCAGCATACGAATTGTACTCAGTACCCCTGTTGTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGCCATAGTTCAGCATACGAATTGTACTCAGTACCCCTGTTGTCA  828

seq1  TTAGTCTCCCCATATCCGATGCTAGCAGAAGTAGACATCCTCAAGTCCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTCCCCATATCCGATGCTAGCAGAAGTAGACATCCTCAAGTCCAG  878

seq1  AGTGTAGCTGGTGTAGTATGCCTGGATGTGAAGGTAGGAAAAATGGAAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAGCTGGTGTAGTATGCCTGGATGTGAAGGTAGGAAAAATGGAAGA  928

seq1  TTTCTACACTGCCTTCCTATTGACAGTGATACTTACACTTCATTCTTTAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACACTGCCTTCCTATTGACAGTGATACTTACACTTCATTCTTTAG  978

seq1  AGGCATCCAGAGTTTTCCCCATGTCTCGAAACAGATTGTTGCTTTGGGGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATCCAGAGTTTTCCCCATGTCTCGAAACAGATTGTTGCTTTGGGGG  1028

seq1  CTTCCTCTTCTCTGAGTCCTTTGTCTGCTCTTCTAAATAGGCACCTGCTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTTCTCTGAGTCCTTTGTCTGCTCTTCTAAATAGGCACCTGCTT  1078

seq1  CCCTTCTTGAAAACTACTGTGACAACCCCTCCCTTTGTGATTATCTCTGT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTTGAAAACTACTGTGACAACCCCTCCCTTTGTGATTATCTCTGT  1128

seq1  ATACATTTAAGCTTTTCTTCCCTATAAAGAATTC  1184
      ||||||||||||||||||||||||||||||||||
seq2  ATACATTTAAGCTTTTCTTCCCTATAAAGAATTC  1162


seq1: chr1_161494424_161495533
seq2: B6Ng01-316C20.g_69_1181

seq1  GAATTCCAGGCCTTTTTTTTTGTCTCTTTTCTCTTCTTTTTCTTTTTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCTTTTTTTTTGTCTCTTTTCTCTTCTTTTTCTTTTTTGT  50

seq1  TTCCATGTGTGAGGAATAATATGGCATATTTGGTTTTGTGGGTTTCATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGTGTGAGGAATAATATGGCATATTTGGTTTTGTGGGTTTCATTT  100

seq1  GTTTGCTCACCGATATATCCTCTGTGCCATCAGCTTTTCAGCTTGATGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTCACCGATATATCCTCTGTGCCATCAGCTTTTCAGCTTGATGTT  150

seq1  ATAACCCACAGCCTTCTGCTTTGTGTTGTTGTTGTTGTTGTTGTTGTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCCACAGCCTTCTGCTTTGTGTTGTTGTTGTTGTTGTTGTTGTTGT  200

seq1  CATCGTCGTCGTCGCCCACCTGGTAGATTAAACACAATGATTTCTGGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGTCGTCGTCGCCCACCTGGTAGATTAAACACAATGATTTCTGGAAG  250

seq1  TTTTAATTTGCACTTTTTCCTGATGGCTAGTTATATTTACTTGTATTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTTGCACTTTTTCCTGATGGCTAGTTATATTTACTTGTATTCTT  300

seq1  TATTTTATGTCTTTTTTCATCTTTCTATTGGCTGGTTTATTGATTTGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATGTCTTTTTTCATCTTTCTATTGGCTGGTTTATTGATTTGTAG  350

seq1  TTCAAGAAGACTTCTCTGATGACAGATCTATATGTAAAGCTTCATTAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGAAGACTTCTCTGATGACAGATCTATATGTAAAGCTTCATTAAGA  400

seq1  TGATAGGAATAGCCAGGTATAAACTAAGTCTACATCCTACCCTAGCTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGGAATAGCCAGGTATAAACTAAGTCTACATCCTACCCTAGCTATA  450

seq1  AATGCAGAGGTTATGAAATTCAAACATTTTATAGACATTTATTCAGGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGAGGTTATGAAATTCAAACATTTTATAGACATTTATTCAGGAAA  500

seq1  TAGTCATAGAAACATAAACATTGATTCATTCACTTAGTGAGCAATCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCATAGAAACATAAACATTGATTCATTCACTTAGTGAGCAATCTTTT  550

seq1  AATTGAACGATGCCTCTGAACCAAGCACTGTGCAAGATATAAAAAAAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAACGATGCCTCTGAACCAAGCACTGTGCAAGATATAAAAAAAGAC  600

seq1  TATTAAGATTTGGAGAGTGTAAAGAAACATTACAGATTACAGAAGGGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGATTTGGAGAGTGTAAAGAAACATTACAGATTACAGAAGGGTTG  650

seq1  GTGGAGATCTTACATACGACAAAGTGCTATTAACCTTTACAGTAAATTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGATCTTACATACGACAAAGTGCTATTAACCTTTACAGTAAATTGA  700

seq1  TATGTAATGAATGTGTTACTAATTGTTTCCAATTGCAGTTGCCAACAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAATGAATGTGTTACTAATTGTTTCCAATTGCAGTTGCCAACAGGC  750

seq1  CTCTACTAAAAATATGCCGACTTTCAATGAACTAACCCAAGAATCTGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTAAAAATATGCCGACTTTCAATGAACTAACCCAAGAATCTGCCA  800

seq1  ACATAAATATTTTTAAAGCTTATGGATTATTATCCTTTCAAGAGGAGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAATATTTTTAAAGCTTATGGATTATTATCCTTTCAAGAGGAGAAA  850

seq1  TTACCCTTGGAAGATATTTATTTTGGTCTTCTCCTCCTCCTTTCTTTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCTTGGAAGATATTTATTTTGGTCTTCTCCTCCTCCTTTCTTTTTT  900

seq1  CCCCCTTTTCTTTTCCC-TTCCTTAAAAAAAAAACTTTAAACAATTTTC-  948
      ||||||||||||||||| ||||||||||||||||| ||||||||||||| 
seq2  CCCCCTTTTCTTTTCCCTTTCCTTAAAAAAAAAAC-TTAAACAATTTTCT  949

seq1  TTGGAATGTCAAAATAT-GGTGC-TTCATACAGAGCAGATGCTGAGAATT  996
      ||||||||||||||||| ||||| |||||||||||||||||||||| |||
seq2  TTGGAATGTCAAAATATGGGTGCTTTCATACAGAGCAGATGCTGAG-ATT  998

seq1  ATGGGTGGA-TATTTTGGATTGCCATATTGGAGCAGGATGC-TGTC-TGT  1043
      ||||||||| ||||||||  ||||||||||||||| ||||| |||| |||
seq2  ATGGGTGGATTATTTTGGGATGCCATATTGGAGCAAGATGCTTGTCTTGT  1048

seq1  GCTAGCAGACTGAACAATTTGGGAAATAT-GGTGCTTTTTAAATGAAGGC  1092
      ||||||||||||| ||  || |||||||| ||||||||||||||||  ||
seq2  GCTAGCAGACTGACCA--TTTGGAAATATGGGTGCTTTTTAAATGA--GC  1094

seq1  TG-AGGGTTTTAGGTGTTT  1110
      || ||| ||||||||||||
seq2  TGAAGGCTTTTAGGTGTTT  1113


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