BAC Information

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BAC

Clone NameB6Ng01-316F23
Chromosome1 (Build37)
Map Location 98,578,461 - 98,695,480
singlet/doubletdoublet
Overlap genenone
Upstream geneGm1833
Downstream geneSlco4c1, EG329217, Slco6b1, LOC670708, LOC623430, Slco6c1, EG634331, EG634346, D1Ertd622e, Hisppd1, Zh2c2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316F23.bB6Ng01-316F23.g
ACCGA106785GA106786
length1,139686
definitionB6Ng01-316F23.b B6Ng01-316F23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,694,331 - 98,695,480)(98,578,461 - 98,579,146)
sequence
gaattcctattttcctctcaggaagtcccaccttgttctctactgcccaa
tcacagactttaccttttatattgactaacttggggaacaaggtttacac
aacagaagctggtatacataaaaatttgcgtatcttggggcaaccagatt
ttggcgtacagaatttagtagttgaatagcagcaccagaccaaccccaac
acctttgctcagtgtggcactgcagaaaaaaaaaatgactttctctgttc
ttcactactatttgtctcttcagttaggcatgggtggtagggcctagctt
ctgagtgataccaggacccaggcttgtacatgtgaagccaggaatggtac
tgtaggcgtactgagatacagaacacgcaccgcctctccgcagcaagtac
tcatgaagagatacaatgcacagtgttcaaactcttatcagaacacacat
gatgtggagaagattgacagctgtgctgatggcatgaagagtgatgggtt
aacatgatgctacaaagccatgcttgatcacaagccacctgcacagccct
gtcctccagctgccttaggtggagctatgtccacctccagaaaacaggag
cccatcttctccctacctcttggctttaacgagttcaaggctctaatttc
actagaggactcttccacttgccctcatgctttccacccgatcacatggg
gaaactatctgctcatctcttccagtcatcatctcccgtggataaaatcg
tggttgctgttaacttggttggccagagctgagctcctcatcaatccccg
aggctgccgagctgtccacaggttttactttctctatttagaacagtggc
aggacctagctgacccagttttctatcttggtattctagcttcctaataa
tgcatgatttaacttatttagttaacatttaattgtgtcaggagggggtt
ataggaagacaacatataggagttgattcttttctcactctgtggtttct
gggcacaacacggtcttcaggcttagtggaaagtgtctttacctactgga
tccattctaacatgtatccttaatccatcaccatcctgataaaccatggg
ctttataaatcacattccaatagatgtttatttaaacat

gaattctttgtttagctctgtattaaggtcaaatctaagtggatcaagga
actccacataaaaccagagacagtgaaacttatagaggagaaagtgggga
aaagcctcaaagatatgggcacaggggggaaattcctgaatagaacagca
atggcttgtgctgtaagatcgagaattgacaaatgggacctcatgaaact
gcaaagcttctgcaaggcaaaagacaccgtcaataagacaaaaaggccac
caacagattaggaaaggatctttacttattctaaagcagataggggacta
atatcaatatatataaagaactcaagaaggtggactccagaaattcaaat
aaccccattaaaaataatattttttaaatagaagatgacaagaaattaaa
atgaaaaacatctacattttctactttccttaaataaaatggagatagaa
ttagccattctgttataatttgcttattttaaaatcatttttcatcttat
gtgagcaagcaaggaagcacatacctataagaactgaactctggctgggc
agtggtggtgtatgcctttaatctcagcacttgggaggcagaggcaggtg
gagttctagagagtgagttccaggacagctagggctttttacagagaacc
ctgcctggaaagaccaaataaggagaaggaggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_98694331_98695480
seq2: B6Ng01-316F23.b_51_1189 (reverse)

seq1  ATGTTATAAATATAACATCTATTGTGATGGTGATTTATAAAGCCCATTGT  50
      ||||| |||||| ||||||||||| ||  |||||||||||||||||| ||
seq2  ATGTT-TAAATA-AACATCTATTG-GAATGTGATTTATAAAGCCCATGGT  47

seq1  TTATTCAGTGATTGTGGATGGATTAAGGATACATTGTTAAGATGGATCCA  100
      ||| |||| ||| || ||||||||||||||||| |||||  |||||||||
seq2  TTA-TCAG-GATGGT-GATGGATTAAGGATACA-TGTTAGAATGGATCCA  93

seq1  GTAGGTAAAGACACTTTCCACTAAGCCTGAAGACCCGTGTTTGGTGCCCA  150
      ||||||||||||||||||||||||||||||||| |||||||  |||||||
seq2  GTAGGTAAAGACACTTTCCACTAAGCCTGAAGA-CCGTGTT--GTGCCCA  140

seq1  GAAACCACAGAGTGGAGGAAAAGAATCAACTCCTATATGTTGTCTTCCTA  200
      ||||||||||||||   |||||||||||||||||||||||||||||||||
seq2  GAAACCACAGAGTG--AGAAAAGAATCAACTCCTATATGTTGTCTTCCTA  188

seq1  TAACCCCTCCCTGACACAA-TAAATGTTAACTAAATAAGTTAAATCATGC  249
      |||||||  |||||||||| ||||||||||||||||||||||||||||||
seq2  TAACCCCCTCCTGACACAATTAAATGTTAACTAAATAAGTTAAATCATGC  238

seq1  ATTATTAGGAAGCTAGAATACCAAGATAGAAAACTGGGTCAGCTAGGTCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTAGGAAGCTAGAATACCAAGATAGAAAACTGGGTCAGCTAGGTCC  288

seq1  TGCCACTGTTCTAAATAGAGAAAGTAAAACCTGTGGACAGCTCGGCAGCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACTGTTCTAAATAGAGAAAGTAAAACCTGTGGACAGCTCGGCAGCC  338

seq1  TCGGGGATTGATGAGGAGCTCAGCTCTGGCCAACCAAGTTAACAGCAACC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGGATTGATGAGGAGCTCAGCTCTGGCCAACCAAGTTAACAGCAACC  388

seq1  ACGATTTTATCCACGGGAGATGATGACTGGAAGAGATGAGCAGATAGTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATTTTATCCACGGGAGATGATGACTGGAAGAGATGAGCAGATAGTTT  438

seq1  CCCCATGTGATCGGGTGGAAAGCATGAGGGCAAGTGGAAGAGTCCTCTAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATGTGATCGGGTGGAAAGCATGAGGGCAAGTGGAAGAGTCCTCTAG  488

seq1  TGAAATTAGAGCCTTGAACTCGTTAAAGCCAAGAGGTAGGGAGAAGATGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTAGAGCCTTGAACTCGTTAAAGCCAAGAGGTAGGGAGAAGATGG  538

seq1  GCTCCTGTTTTCTGGAGGTGGACATAGCTCCACCTAAGGCAGCTGGAGGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGTTTTCTGGAGGTGGACATAGCTCCACCTAAGGCAGCTGGAGGA  588

seq1  CAGGGCTGTGCAGGTGGCTTGTGATCAAGCATGGCTTTGTAGCATCATGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTGTGCAGGTGGCTTGTGATCAAGCATGGCTTTGTAGCATCATGT  638

seq1  TAACCCATCACTCTTCATGCCATCAGCACAGCTGTCAATCTTCTCCACAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCATCACTCTTCATGCCATCAGCACAGCTGTCAATCTTCTCCACAT  688

seq1  CATGTGTGTTCTGATAAGAGTTTGAACACTGTGCATTGTATCTCTTCATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTGTTCTGATAAGAGTTTGAACACTGTGCATTGTATCTCTTCATG  738

seq1  AGTACTTGCTGCGGAGAGGCGGTGCGTGTTCTGTATCTCAGTACGCCTAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTGCTGCGGAGAGGCGGTGCGTGTTCTGTATCTCAGTACGCCTAC  788

seq1  AGTACCATTCCTGGCTTCACATGTACAAGCCTGGGTCCTGGTATCACTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCATTCCTGGCTTCACATGTACAAGCCTGGGTCCTGGTATCACTCA  838

seq1  GAAGCTAGGCCCTACCACCCATGCCTAACTGAAGAGACAAATAGTAGTGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTAGGCCCTACCACCCATGCCTAACTGAAGAGACAAATAGTAGTGA  888

seq1  AGAACAGAGAAAGTCATTTTTTTTTTCTGCAGTGCCACACTGAGCAAAGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGAGAAAGTCATTTTTTTTTTCTGCAGTGCCACACTGAGCAAAGG  938

seq1  TGTTGGGGTTGGTCTGGTGCTGCTATTCAACTACTAAATTCTGTACGCCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGGTTGGTCTGGTGCTGCTATTCAACTACTAAATTCTGTACGCCA  988

seq1  AAATCTGGTTGCCCCAAGATACGCAAATTTTTATGTATACCAGCTTCTGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGGTTGCCCCAAGATACGCAAATTTTTATGTATACCAGCTTCTGT  1038

seq1  TGTGTAAACCTTGTTCCCCAAGTTAGTCAATATAAAAGGTAAAGTCTGTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAAACCTTGTTCCCCAAGTTAGTCAATATAAAAGGTAAAGTCTGTG  1088

seq1  ATTGGGCAGTAGAGAACAAGGTGGGACTTCCTGAGAGGAAAATAGGAATT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGCAGTAGAGAACAAGGTGGGACTTCCTGAGAGGAAAATAGGAATT  1138

seq1  C  1150
      |
seq2  C  1139


seq1: chr1_98578461_98579146
seq2: B6Ng01-316F23.g_67_752

seq1  GAATTCTTTGTTTAGCTCTGTATTAAGGTCAAATCTAAGTGGATCAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGTATTAAGGTCAAATCTAAGTGGATCAAGGA  50

seq1  ACTCCACATAAAACCAGAGACAGTGAAACTTATAGAGGAGAAAGTGGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACATAAAACCAGAGACAGTGAAACTTATAGAGGAGAAAGTGGGGA  100

seq1  AAAGCCTCAAAGATATGGGCACAGGGGGGAAATTCCTGAATAGAACAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTCAAAGATATGGGCACAGGGGGGAAATTCCTGAATAGAACAGCA  150

seq1  ATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTCATGAAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTCATGAAACT  200

seq1  GCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGGCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGGCCAC  250

seq1  CAACAGATTAGGAAAGGATCTTTACTTATTCTAAAGCAGATAGGGGACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGATTAGGAAAGGATCTTTACTTATTCTAAAGCAGATAGGGGACTA  300

seq1  ATATCAATATATATAAAGAACTCAAGAAGGTGGACTCCAGAAATTCAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAATATATATAAAGAACTCAAGAAGGTGGACTCCAGAAATTCAAAT  350

seq1  AACCCCATTAAAAATAATATTTTTTAAATAGAAGATGACAAGAAATTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCATTAAAAATAATATTTTTTAAATAGAAGATGACAAGAAATTAAA  400

seq1  ATGAAAAACATCTACATTTTCTACTTTCCTTAAATAAAATGGAGATAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAACATCTACATTTTCTACTTTCCTTAAATAAAATGGAGATAGAA  450

seq1  TTAGCCATTCTGTTATAATTTGCTTATTTTAAAATCATTTTTCATCTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCATTCTGTTATAATTTGCTTATTTTAAAATCATTTTTCATCTTAT  500

seq1  GTGAGCAAGCAAGGAAGCACATACCTATAAGAACTGAACTCTGGCTGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCAAGCAAGGAAGCACATACCTATAAGAACTGAACTCTGGCTGGGC  550

seq1  AGTGGTGGTGTATGCCTTTAATCTCAGCACTTGGGAGGCAGAGGCAGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGGTGTATGCCTTTAATCTCAGCACTTGGGAGGCAGAGGCAGGTG  600

seq1  GAGTTCTAGAGAGTGAGTTCCAGGACAGCTAGGGCTTTTTACAGAGAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTAGAGAGTGAGTTCCAGGACAGCTAGGGCTTTTTACAGAGAACC  650

seq1  CTGCCTGGAAAGACCAAATAAGGAGAAGGAGGAGGA  686
      ||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGGAAAGACCAAATAAGGAGAAGGAGGAGGA  686


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