BAC Information

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BAC

Clone NameB6Ng01-316G12
Chromosome1 (Build37)
Map Location 196,323,153 - 196,447,929
singlet/doubletdoublet
Overlap geneEG623172, Plxna2
Upstream geneLOC667208
Downstream geneCd34, Cd46, Crry, Cr2, EG635956, LOC623380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316G12.bB6Ng01-316G12.g
ACCGA106811GA106812
length1,140541
definitionB6Ng01-316G12.b B6Ng01-316G12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(196,446,791 - 196,447,929)(196,323,153 - 196,323,699)
sequence
gaattcctccagccagggttaagctcctctaggagcacgggttcttactg
gaaagccccaacattcatagtcagcccagagcgaagaatgaagtttcaag
atctggaaagagactgagtatgacaggcctgctattgtgtggaattgcag
agagctgaacctgactccaggtctgttgaaagcagccatctcagtattgt
ctgtgttctagcccagatactcaactgtacagacctggtccactgcaagg
atggctgtgtctcaaaatgtctaatcccccacagatggccttcagagaca
tctggtagcctcactccccaaagccatccacctctgtctgttgtgcatat
gagtggctagagagttaatctgtctgtgatcttggatcttcactgaacat
tcttgccctcaacaactactctcctttccagatggtagggactgacctgt
tctcccaagttgcaccccctccctccccccagctttttctccctcttatc
tctacttgagctatttgaagagatagcccttcctagggcaagggtcatgt
taaacaggtgggcatttttgagggccctaggaatgacattttcagctttt
gacatacagctcaagatgaacatttacgaagactacctatgagtaaaaga
aactggaattttctaagatcctatcacttcgtgaggtagggcaaaaaaga
gtacatggagggaaatgagctttaaggagcctcttggactctggacaaac
tcccacttcaaccagcaccactgttgctcaaaccaagggggctggcccca
gctgggcactatgccatgggggatggggacaggaacacttaactacagtg
ctttccaaaccgttctcacagattcccggaacgcacgcaaaggatgcctt
ctccttcccggtgattcccagtctactgaaccactggaacagccagcggc
cacccgggactacactgcctggtgaacgcccccaaccgggcctccgggcc
atagtcgctccaggctatcttgctagtgccacggaggcccttcttctggg
ctcacctgggacgacttcgtcgctcaggcgctccctagagctgcagacaa
gcggcagggtgcgcgctatagcgcgccactgagcgccgga

actattcatttgttttctaaacatacggtgccttctttagaaagttactc
cctagagataaaatatttagaggctgatttgaagcttagcaagttgccta
cctttacaaccaggcatccaaagttaaaaccagaaactgagttcaaaggt
ggattactttctgaagcaaacttaagctttagttaagcttctactcaaca
ttaactgagaatgatatatacgtatgagaagttatccctgttcagaaata
agcctatgtctccagttaccttgaggctccaaaattcagtatctctaatc
tacaggagtgcattgactggcgcccacagagatatcatgtagcatagaat
tccagggggttttcctaaggcttggagcattcctctatagcaaggtcact
gctctaagtatcattagcatggcaataaagaacatatgcacaaaaagttc
agtgtggagccaaaggtgaactgaattttttcttaaagttcccagtctac
ctagcactgtgtgggagtgtagaggattgggtgggggtata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_196446791_196447929
seq2: B6Ng01-316G12.b_46_1185 (reverse)

seq1  TCCGGCGCTCCGTGGCGCGCTTATAGCGCGCA-CCTGCCGGCTGTCTGCA  49
      |||||||||| ||||||||| ||||||||||| |||||||  ||||||||
seq2  TCCGGCGCTCAGTGGCGCGC-TATAGCGCGCACCCTGCCGCTTGTCTGCA  49

seq1  GCTCTGGGGAGCGCCTGAGCGACGAGGTCGTCCCAGGGTTGGAGCCCAGA  99
      ||||| ||||||||||||||||||| |||||||||||    |||||||||
seq2  GCTCTAGGGAGCGCCTGAGCGACGAAGTCGTCCCAGG---TGAGCCCAGA  96

seq1  --GAGGGCCTCCGTGGCACTAGCAAGATAGCCTGGAGCGACTATGG-CCG  146
         ||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGAAGGGCCTCCGTGGCACTAGCAAGATAGCCTGGAGCGACTATGGCCCG  146

seq1  GAGGCCGGTTGGGGGGCGTTCACCAGGCAGTGTAGTCCCGGGTGGCCGCT  196
      |||||| | | |||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCCGGTTGGGGGCGTTCACCAGGCAGTGTAGTCCCGGGTGGCCGCT  196

seq1  GGCTGTTCCAGTGGTTCAGTAGACTGGGAATCACCGGGAAGGAGAAGGCA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTCCAGTGGTTCAGTAGACTGGGAATCACCGGGAAGGAGAAGGCA  246

seq1  TCCTTTGCGTGCGTTCCGGGAATCTGTGAGAACGGTTTGG-AAGCACTGT  295
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCCTTTGCGTGCGTTCCGGGAATCTGTGAGAACGGTTTGGAAAGCACTGT  296

seq1  AGTTAAGTGTTCCTGTCCCCATCCCCCATGGCATAGTGCCCAGCTGGGGC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAGTGTTCCTGTCCCCATCCCCCATGGCATAGTGCCCAGCTGGGGC  346

seq1  CAGCCCCCTTGGTTTGAGCAACAGTGGTGCTGGTTGAAGTGGGAGTTTGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCCTTGGTTTGAGCAACAGTGGTGCTGGTTGAAGTGGGAGTTTGT  396

seq1  CCAGAGTCCAAGAGGCTCCTTAAAGCTCATTTCCCTCCATGTACTCTTTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTCCAAGAGGCTCCTTAAAGCTCATTTCCCTCCATGTACTCTTTT  446

seq1  TTGCCCTACCTCACGAAGTGATAGGATCTTAGAAAATTCCAGTTTCTTTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCTACCTCACGAAGTGATAGGATCTTAGAAAATTCCAGTTTCTTTT  496

seq1  ACTCATAGGTAGTCTTCGTAAATGTTCATCTTGAGCTGTATGTCAAAAGC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATAGGTAGTCTTCGTAAATGTTCATCTTGAGCTGTATGTCAAAAGC  546

seq1  TGAAAATGTCATTCCTAGGGCCCTCAAAAATGCCCACCTGTTTAACATGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATGTCATTCCTAGGGCCCTCAAAAATGCCCACCTGTTTAACATGA  596

seq1  CCCTTGCCCTAGGAAGGGCTATCTCTTCAAATAGCTCAAGTAGAGATAAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGCCCTAGGAAGGGCTATCTCTTCAAATAGCTCAAGTAGAGATAAG  646

seq1  AGGGAGAAAAAGCTGGGGGGAGGGAGGGGGTGCAACTTGGGAGAACAGGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAAAAAGCTGGGGGGAGGGAGGGGGTGCAACTTGGGAGAACAGGT  696

seq1  CAGTCCCTACCATCTGGAAAGGAGAGTAGTTGTTGAGGGCAAGAATGTTC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCTACCATCTGGAAAGGAGAGTAGTTGTTGAGGGCAAGAATGTTC  746

seq1  AGTGAAGATCCAAGATCACAGACAGATTAACTCTCTAGCCACTCATATGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGATCCAAGATCACAGACAGATTAACTCTCTAGCCACTCATATGC  796

seq1  ACAACAGACAGAGGTGGATGGCTTTGGGGAGTGAGGCTACCAGATGTCTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGACAGAGGTGGATGGCTTTGGGGAGTGAGGCTACCAGATGTCTC  846

seq1  TGAAGGCCATCTGTGGGGGATTAGACATTTTGAGACACAGCCATCCTTGC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCCATCTGTGGGGGATTAGACATTTTGAGACACAGCCATCCTTGC  896

seq1  AGTGGACCAGGTCTGTACAGTTGAGTATCTGGGCTAGAACACAGACAATA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGACCAGGTCTGTACAGTTGAGTATCTGGGCTAGAACACAGACAATA  946

seq1  CTGAGATGGCTGCTTTCAACAGACCTGGAGTCAGGTTCAGCTCTCTGCAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATGGCTGCTTTCAACAGACCTGGAGTCAGGTTCAGCTCTCTGCAA  996

seq1  TTCCACACAATAGCAGGCCTGTCATACTCAGTCTCTTTCCAGATCTTGAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACACAATAGCAGGCCTGTCATACTCAGTCTCTTTCCAGATCTTGAA  1046

seq1  ACTTCATTCTTCGCTCTGGGCTGACTATGAATGTTGGGGCTTTCCAGTAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATTCTTCGCTCTGGGCTGACTATGAATGTTGGGGCTTTCCAGTAA  1096

seq1  GAACCCGTGCTCCTAGAGGAGCTTAACCCTGGCTGGAGGAATTC  1139
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCGTGCTCCTAGAGGAGCTTAACCCTGGCTGGAGGAATTC  1140


seq1: chr1_196323153_196323699
seq2: B6Ng01-316G12.g_67_613

seq1  GAATTCACTATTCATTTGTTTTCTAAACATACGGTGCCTTCTTTAGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATTCATTTGTTTTCTAAACATACGGTGCCTTCTTTAGAAAG  50

seq1  TTACTCCCTAGAGATAAAATATTTAGAGGCTGATTTGAAGCTTAGCAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCCCTAGAGATAAAATATTTAGAGGCTGATTTGAAGCTTAGCAAGT  100

seq1  TGCCTACCTTTACAACCAGGCATCCAAAGTTAAAACCAGAAACTGAGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTACCTTTACAACCAGGCATCCAAAGTTAAAACCAGAAACTGAGTTC  150

seq1  AAAGGTGGATTACTTTCTGAAGCAAACTTAAGCTTTAGTTAAGCTTCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGGATTACTTTCTGAAGCAAACTTAAGCTTTAGTTAAGCTTCTAC  200

seq1  TCAACATTAACTGAGAATGATATATACGTATGAGAAGTTATCCCTGTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATTAACTGAGAATGATATATACGTATGAGAAGTTATCCCTGTTCA  250

seq1  GAAATAAGCCTATGTCTCCAGTTACCTTGAGGCTCCAAAATTCAGTATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAGCCTATGTCTCCAGTTACCTTGAGGCTCCAAAATTCAGTATCT  300

seq1  CTAATCTACAGGAGTGCATTGACTGGCGCCCACAGAGATATCATGTAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCTACAGGAGTGCATTGACTGGCGCCCACAGAGATATCATGTAGCA  350

seq1  TAGAATTCCAGGGGGTTTTCCTAAGGCTTGGAGCATTCCTCTATAGCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTCCAGGGGGTTTTCCTAAGGCTTGGAGCATTCCTCTATAGCAAG  400

seq1  GTCACTGCTCTAAGTATCATTAGCATGGCAATAAAGAACATATGCACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGCTCTAAGTATCATTAGCATGGCAATAAAGAACATATGCACAAA  450

seq1  AAGTTCAGTGTGGAGCCAAAGGTGAACTGAATTTTTTCTTAAAGTTCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCAGTGTGGAGCCAAAGGTGAACTGAATTTTTTCTTAAAGTTCCCA  500

seq1  GTCTACCTAGCACTGTGTGGGAGTGTAGAGGATTGGGTGGGGGTATA  547
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACCTAGCACTGTGTGGGAGTGTAGAGGATTGGGTGGGGGTATA  547


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