BAC Information

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BAC

Clone NameB6Ng01-316G21
Chromosome1 (Build37)
Map Location 114,029,046 - 114,154,836
singlet/doubletdoublet
Overlap geneEG626897
Upstream geneEG666578, Dsel, LOC547247
Downstream geneLOC666615, LOC666635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316G21.bB6Ng01-316G21.g
ACCGA106829GA106830
length1,076994
definitionB6Ng01-316G21.b B6Ng01-316G21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,153,792 - 114,154,836)(114,029,046 - 114,029,886)
sequence
gaattccatttataaaaaagtatcactatggcatcaaaagagatttcttg
acaagcctgtcaaggtaaagtatcactcttaaagattttgggatatcttg
ccacatgacagtcactgctgaaattcacagaatttttggctgtataggaa
attgattttttttcccttgacatcttgcattgcaacttagtaaactatgg
aaaagtgttctgaggcaggaggtgggtgggttatttccaactcagttcat
caaagtcctgtctttgaagcatgcagagctgagagcaaaatattattacc
ttcaatttctaggggaagaaaacatgagcagtcccagtcaacattattgt
tttggaagacacttttactccccggactggcaactcaaagagaagttcca
aatatctggcactggaatttctgttagatggtatatagttcttggaataa
tctttttctcctcctaagtggtataactacatttaaattagttatatatg
cattaacttatatagagtatgtattttaaggaatcataaagtaatacttt
tctctatagatttctcaaacactctggtggtattttctttccattcccct
ctttccttcctgctctaatgatctccttcccctctcaccaattaaaacta
tttttcacatttctcatttcataaaatatcttaaaattttcttctcaatt
gctccttcttctcctttcgcacattctaacttttaacagttcgtttaaaa
gtccaagttcagctttgtctccaccttgcttctatattacaccttcagcc
caggcagatcatcagcaagactgtgcctctgaaaatcccacactattgag
atctgccaggagatctgtggcatgtagggcaacagataaagtacttccca
aataacccaaacgtttgggacccctgaggattccagcagtctgagaccac
tttgcacacttgatctccatctcctgtctggcctggtgtcttttgccagg
acagattatcagtggtgtctgacacctctgaatgcaaccatggaagatct
gctggaaactagggcctgcctggtct

gaattcaaggtggttgtaaaaacatgttattcatataaaaggaagacaaa
gtagtataaatttcatagtaaaattgaggatattagtaaaactggttctt
tataatttattgattatgttgctcctatgcttgctgaaacaacttggtta
cctgaaacaaaatgttttctattcacagagagagcaaatgtaaaagaaac
aatcacaaaataaaataatagaaaaagtttcatactttaagtggactaga
agactcaatatattcctgaactagtacccttcttcaatggagtatgtaaa
ttaaattatgagaatgtttcatttttaaatattttcaatcttaagatttt
tttgcttacagtcacacgaagatactttatattgttgtgactattgtgaa
gagtgtcgttcccctaaatttctttctcagtctgtttatcctgagaatgg
gaaggctactgatttgtttgagttaattttatatctaatcactttggtga
agttgtttaccagctgtaggagttctctggtggagtttttgggatcattc
gagtataatatattatcatctgcacatagtcataatttgacctctccctt
tccagtttgtttccctagactgcaccacctggagatccaatccatatata
gccagcaaaactggacattattgtggatgctgggaagtgcttgctgaggg
aagcctaatatggctgactcctgagaggctttgccagagcctgacaaata
cagagggagaagctagcagccaaccattgggctgagctgagggattggag
aagttggagaagtggctgaaggagctgagggaatttgcagccccatggat
ggaacagcagcatcaatgtaccagacactcctccccccaccctcaccccc
gagttcttggagactggaccaccaaccaaagaatacacatggagcaaccc
atgcccttggtcatatatgtgggagaggatagcttgttggtcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_114153792_114154836
seq2: B6Ng01-316G21.b_74_1124 (reverse)

seq1  AGACCA-GCA-GCCCTAG-CTCCAGCAGATCT--CATGGTTTGCATTCAG  45
      |||||| ||| |||||||  ||||||||||||  ||||| ||||||||||
seq2  AGACCAGGCAGGCCCTAGTTTCCAGCAGATCTTCCATGG-TTGCATTCAG  49

seq1  A-GTGTCAGACA-CACTGATAATCTGTCCTGGCAAAAGACA-CAGGCCAG  92
      | |||||||||| |||||||||||||||||||||||||||| ||||||||
seq2  AGGTGTCAGACACCACTGATAATCTGTCCTGGCAAAAGACACCAGGCCAG  99

seq1  ACAGGAGATGGAGATCAAGTGGTGCAAAGTGGTCTCAGACTGCTGGAATC  142
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACAGGAGATGGAGATCAAGT-GTGCAAAGTGGTCTCAGACTGCTGGAATC  148

seq1  CTCAGGGGTCCCAAACGTTTGGGTTATTTGGGAAGTACTTTATCTGTTGC  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGGTCCCAAACGTTTGGGTTATTTGGGAAGTACTTTATCTGTTGC  198

seq1  CCTACATGCCACAGATCTCCTGGCAGATCTCAATAGTGTGGGATTTTCAG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACATGCCACAGATCTCCTGGCAGATCTCAATAGTGTGGGATTTTCAG  248

seq1  AGGCACAGTCTTGCTGATGATCTGCCTGGGCTGAAGGTGTAATATAGAAG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACAGTCTTGCTGATGATCTGCCTGGGCTGAAGGTGTAATATAGAAG  298

seq1  CAAGGTGGAGACAAAGCTGAACTTGGACTTTTAAACGAACTGTTAAAAGT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGGAGACAAAGCTGAACTTGGACTTTTAAACGAACTGTTAAAAGT  348

seq1  TAGAATGTGCGAAAGGAGAAGAAGGAGCAATTGAGAAGAAAATTTTAAGA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGTGCGAAAGGAGAAGAAGGAGCAATTGAGAAGAAAATTTTAAGA  398

seq1  TATTTTATGAAATGAGAAATGTGAAAAATAGTTTTAATTGGTGAGAGGGG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATGAAATGAGAAATGTGAAAAATAGTTTTAATTGGTGAGAGGGG  448

seq1  AAGGAGATCATTAGAGCAGGAAGGAAAGAGGGGAATGGAAAGAAAATACC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGATCATTAGAGCAGGAAGGAAAGAGGGGAATGGAAAGAAAATACC  498

seq1  ACCAGAGTGTTTGAGAAATCTATAGAGAAAAGTATTACTTTATGATTCCT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGTGTTTGAGAAATCTATAGAGAAAAGTATTACTTTATGATTCCT  548

seq1  TAAAATACATACTCTATATAAGTTAATGCATATATAACTAATTTAAATGT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATACATACTCTATATAAGTTAATGCATATATAACTAATTTAAATGT  598

seq1  AGTTATACCACTTAGGAGGAGAAAAAGATTATTCCAAGAACTATATACCA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATACCACTTAGGAGGAGAAAAAGATTATTCCAAGAACTATATACCA  648

seq1  TCTAACAGAAATTCCAGTGCCAGATATTTGGAACTTCTCTTTGAGTTGCC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACAGAAATTCCAGTGCCAGATATTTGGAACTTCTCTTTGAGTTGCC  698

seq1  AGTCCGGGGAGTAAAAGTGTCTTCCAAAACAATAATGTTGACTGGGACTG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCGGGGAGTAAAAGTGTCTTCCAAAACAATAATGTTGACTGGGACTG  748

seq1  CTCATGTTTTCTTCCCCTAGAAATTGAAGGTAATAATATTTTGCTCTCAG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTTTTCTTCCCCTAGAAATTGAAGGTAATAATATTTTGCTCTCAG  798

seq1  CTCTGCATGCTTCAAAGACAGGACTTTGATGAACTGAGTTGGAAATAACC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCATGCTTCAAAGACAGGACTTTGATGAACTGAGTTGGAAATAACC  848

seq1  CACCCACCTCCTGCCTCAGAACACTTTTCCATAGTTTACTAAGTTGCAAT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACCTCCTGCCTCAGAACACTTTTCCATAGTTTACTAAGTTGCAAT  898

seq1  GCAAGATGTCAAGGGAAAAAAAATCAATTTCCTATACAGCCAAAAATTCT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGATGTCAAGGGAAAAAAAATCAATTTCCTATACAGCCAAAAATTCT  948

seq1  GTGAATTTCAGCAGTGACTGTCATGTGGCAAGATATCCCAAAATCTTTAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTTCAGCAGTGACTGTCATGTGGCAAGATATCCCAAAATCTTTAA  998

seq1  GAGTGATACTTTACCTTGACAGGCTTGTCAAGAAATCTCTTTTGATGCCA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGATACTTTACCTTGACAGGCTTGTCAAGAAATCTCTTTTGATGCCA  1048

seq1  TAG  1045
      |||
seq2  TAG  1051


seq1: chr1_114029046_114029886
seq2: B6Ng01-316G21.g_68_908

seq1  GAATTCAAGGTGGTTGTAAAAACATGTTATTCATATAAAAGGAAGACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGTGGTTGTAAAAACATGTTATTCATATAAAAGGAAGACAAA  50

seq1  GTAGTATAAATTTCATAGTAAAATTGAGGATATTAGTAAAACTGGTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTATAAATTTCATAGTAAAATTGAGGATATTAGTAAAACTGGTTCTT  100

seq1  TATAATTTATTGATTATGTTGCTCCTATGCTTGCTGAAACAACTTGGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTATTGATTATGTTGCTCCTATGCTTGCTGAAACAACTTGGTTA  150

seq1  CCTGAAACAAAATGTTTTCTATTCACAGAGAGAGCAAATGTAAAAGAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAACAAAATGTTTTCTATTCACAGAGAGAGCAAATGTAAAAGAAAC  200

seq1  AATCACAAAATAAAATAATAGAAAAAGTTTCATACTTTAAGTGGACTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAAAATAAAATAATAGAAAAAGTTTCATACTTTAAGTGGACTAGA  250

seq1  AGACTCAATATATTCCTGAACTAGTACCCTTCTTCAATGGAGTATGTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCAATATATTCCTGAACTAGTACCCTTCTTCAATGGAGTATGTAAA  300

seq1  TTAAATTATGAGAATGTTTCATTTTTAAATATTTTCAATCTTAAGATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTATGAGAATGTTTCATTTTTAAATATTTTCAATCTTAAGATTTT  350

seq1  TTTGCTTACAGTCACACGAAGATACTTTATATTGTTGTGACTATTGTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTACAGTCACACGAAGATACTTTATATTGTTGTGACTATTGTGAA  400

seq1  GAGTGTCGTTCCCCTAAATTTCTTTCTCAGTCTGTTTATCCTGAGAATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTCGTTCCCCTAAATTTCTTTCTCAGTCTGTTTATCCTGAGAATGG  450

seq1  GAAGGCTACTGATTTGTTTGAGTTAATTTTATATCTAATCACTTTGGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTACTGATTTGTTTGAGTTAATTTTATATCTAATCACTTTGGTGA  500

seq1  AGTTGTTTACCAGCTGTAGGAGTTCTCTGGTGGAGTTTTTGGGATCATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTTACCAGCTGTAGGAGTTCTCTGGTGGAGTTTTTGGGATCATTC  550

seq1  GAGTATAATATATTATCATCTGCACATAGTCATAATTTGACCTCTCCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATAATATATTATCATCTGCACATAGTCATAATTTGACCTCTCCCTT  600

seq1  TCCAGTTTGTTTCCCTAGACTGCACCACCTGGAGATCCAATCCATATATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTTGTTTCCCTAGACTGCACCACCTGGAGATCCAATCCATATATA  650

seq1  GCCAGCAAAACTGGACATTATTGTGGATGCTGGGAAGTGCTTGCTGAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCAAAACTGGACATTATTGTGGATGCTGGGAAGTGCTTGCTGAGGG  700

seq1  AAGCCTAATATGGCTGACTCCTGAGAGGCTTTGCCAGAGCCTGACAAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTAATATGGCTGACTCCTGAGAGGCTTTGCCAGAGCCTGACAAATA  750

seq1  CAGAGGGAGAAGCTAGCAGCCAACCATTGGGCTGAGCTGAGGGATTGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGAGAAGCTAGCAGCCAACCATTGGGCTGAGCTGAGGGATTGGAG  800

seq1  AAGTTGGAGAAGTGGCTGAAGGAGCTGAGGGAATTTGCAGC  841
      |||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGGAGAAGTGGCTGAAGGAGCTGAGGGAATTTGCAGC  841


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