BAC Information

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BAC

Clone NameB6Ng01-316J14
Chromosome1 (Build37)
Map Location 103,856,083 - 103,857,214
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041909, LOC100040993, LOC383650
Downstream geneLOC100041056, LOC100041067
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316J14.bB6Ng01-316J14.g
ACCGA106954GA106955
length9361,121
definitionB6Ng01-316J14.b B6Ng01-316J14.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgtacagtccttgatttctttttttgtttcttccctgacaaagt
taccactgagtagagagttgttcagttgccatgagtatgtgtactttctg
ttagctttgttgctattgaaatctagtcttagttcattgtggtcttccag
aatgcatgatattatttaaaacttcttgtatctgttgaagattgttttgt
ggatgattagatgaccagttttggagaaggtttcatgaagtgctgagaag
aaggtatattcattagtttgggagtgaaatgtttcatttggttaataact
tctttcaatttcactgtgtctctgatttctttaatttctgtttcataaaa
accacttggcattgttacacagacagacatgtggatgaatggaatagaat
aaaagactcagcagtcaacccatacacctatggacacttgacatttcatt
aagaagccaaaaaaagcatacagtggaaaaaagaaagcattttgaataaa
tgatgctagtctaacagggtgtctgtatgtagaaaactgaaaatagattc
atatttatcactctgcacaaagctgaagtcccagttaatcaaggacctca
acataaaaccagatacactgaatctaacagaaacaaagtgggaaagagct
tgaattcttacataaaacataaatatctcagagtctaattatcagcaatt
tataagtgggacctcatgaaactgataaacttctgtaaggccacattgta
catcaataggtacaaatcagcacttacaagaggtggaggaaaattcttca
ctaaccctatatctgaagagggaacctgttcaattattaaaggaactcag
aaggttaacctcctgtcttagtcaggtctcattcctgccaaggcatcatt
gaaccagaaccaagttggggggagagaaggtttatc

gaattctctgaaaatacacaaaggttgttatatgtatgtatctgggtaat
tatctaggataaatgtctttatatttcatctactttccaaaatatgaaca
tgatacagtaaaagaaggaggaaaaggctgtgcaaatctcatcatcctaa
atgtgctctggaagaaccaagcctattctaaaagagtaatatgttctttt
tccactcatgacaaggtgagttaggctgctgaaacctgaaggggtgagaa
ataaccctccaaagagaatagtattacagaatataaaagacgaggacaga
aaaataaagagaacattaaagttgtcatcattttgccagtggtcaagtat
aaaagtaccgaaaaatatgaaattaatagggatgaacacttttagtataa
agggaagagatttatcataagaaattattcacagccaatccctttgtcct
ttcctccatcactattgctaccccttcacaaaagaagaaaggacagaaaa
gaacagcttaaaatctacattttgcacatttctgaatattcacttgaaac
agctgccaactactaagaaagcactgggatttgatcaaccccactttata
ataagagatatggcttcaaatatgatgtgcctccagcagttacctaatca
ggttgctgccagggtaggttacagaataggagatatttcctcttaggaaa
agagtcaagtgaatgttaatagctggggacaatctagagataaatgcaaa
gggattttgtgatatcaaaagcttcccttggatgtctcatcatttcctga
ataatccatgacttatataaagacggagaacccaggctaaaggttggttt
gaatggcaagatggagacttgagcatctttttaaacttagatgaatattg
aaatggcagttaatatctctacttgtacaaatgtattgataaaaaaattt
agatcccttcacatgagatttgaggacagcttatttaatctctgtcaaca
attttctaccatggatagactgactgcttctgttatttgacagccacaac
tacacacacaccaaccaaaatgaccgtgaatgagctatcatgccttgtga
cattagaagaacctaagccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_103856083_103857214
seq2: B6Ng01-316J14.g_68_1188

seq1  GAATTCTCTGAAAATACACAAAGGTTGTTATATGTATGTATCTGGGTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAAAATACACAAAGGTTGTTATATGTATGTATCTGGGTAAT  50

seq1  TATCTAGGATAAATGTCTTTATATTTCATCTACTTTCCAAAATATGAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAGGATAAATGTCTTTATATTTCATCTACTTTCCAAAATATGAACA  100

seq1  TGATACAGTAAAAGAAGGAGGAAAAGGCTGTGCAAATCTCATCATCCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACAGTAAAAGAAGGAGGAAAAGGCTGTGCAAATCTCATCATCCTAA  150

seq1  ATGTGCTCTGGAAGAACCAAGCCTATTCTAAAAGAGTAATATGTTCTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTCTGGAAGAACCAAGCCTATTCTAAAAGAGTAATATGTTCTTTT  200

seq1  TCCACTCATGACAAGGTGAGTTAGGCTGCTGAAACCTGAAGGGGTGAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCATGACAAGGTGAGTTAGGCTGCTGAAACCTGAAGGGGTGAGAA  250

seq1  ATAACCCTCCAAAGAGAATAGTATTACAGAATATAAAAGACGAGGACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCCTCCAAAGAGAATAGTATTACAGAATATAAAAGACGAGGACAGA  300

seq1  AAAATAAAGAGAACATTAAAGTTGTCATCATTTTGCCAGTGGTCAAGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAGAGAACATTAAAGTTGTCATCATTTTGCCAGTGGTCAAGTAT  350

seq1  AAAAGTACCGAAAAATATGAAATTAATAGGGATGAACACTTTTAGTATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTACCGAAAAATATGAAATTAATAGGGATGAACACTTTTAGTATAA  400

seq1  AGGGAAGAGATTTATCATAAGAAATTATTCACAGCCAATCCCTTTGTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGAGATTTATCATAAGAAATTATTCACAGCCAATCCCTTTGTCCT  450

seq1  TTCCTCCATCACTATTGCTACCCCTTCACAAAAGAAGAAAGGACAGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCATCACTATTGCTACCCCTTCACAAAAGAAGAAAGGACAGAAAA  500

seq1  GAACAGCTTAAAATCTACATTTTGCACATTTCTGAATATTCACTTGAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGCTTAAAATCTACATTTTGCACATTTCTGAATATTCACTTGAAAC  550

seq1  AGCTGCCAACTACTAAGAAAGCACTGGGATTTGATCAACCCCACTTTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCAACTACTAAGAAAGCACTGGGATTTGATCAACCCCACTTTATA  600

seq1  ATAAGAGATATGGCTTCAAATATGATGTGCCTCCAGCAGTTACCTAATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGATATGGCTTCAAATATGATGTGCCTCCAGCAGTTACCTAATCA  650

seq1  GGTTGCTGCCAGGGTAGGTTACAGAATAGGAGATATTTCCTCTTAGGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTGCCAGGGTAGGTTACAGAATAGGAGATATTTCCTCTTAGGAAA  700

seq1  AGAGTCAAGTGAATGTTAATAGCTGGGGACAATCTAGAGATAAATGCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCAAGTGAATGTTAATAGCTGGGGACAATCTAGAGATAAATGCAAA  750

seq1  GGGATTTTGTGATATCAAAAGCTTCCCTTGGATGTCTCATCATTTCCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTTGTGATATCAAAAGCTTCCCTTGGATGTCTCATCATTTCCTGA  800

seq1  ATAATCCATGACTTATATAAAGACGGAGAACCCAGGCTAAA-GTTGGTTT  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATAATCCATGACTTATATAAAGACGGAGAACCCAGGCTAAAGGTTGGTTT  850

seq1  GAATGGCAAGATGGAGACTTGAGCATCTTTTTAAAACTTAGATGAATATT  899
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAATGGCAAGATGGAGACTTGAGCATCTTTTT-AAACTTAGATGAATATT  899

seq1  GAAATGGCAGTTAATATCTCTACTTGTACAAAATGTATTTGATAAAAAAA  949
      ||||||||||||||||||||||||||||| ||||||| ||||||||||||
seq2  GAAATGGCAGTTAATATCTCTACTTGTAC-AAATGTA-TTGATAAAAAAA  947

seq1  TTAAGAATCCTTCACATGAGATTTGAGGGACAAGCTTATTTAAATCCTCT  999
      || |||  |||||||||||||||||| |||| |||||||||||   ||||
seq2  TTTAGATCCCTTCACATGAGATTTGA-GGAC-AGCTTATTTAA--TCTCT  993

seq1  GTCAACAA-TTTCTACCGTGGAATAAGAACTGACTGCTTCTG-TATTTGA  1047
      |||||||| |||||||| ||| |||   |||||||||||||| |||||||
seq2  GTCAACAATTTTCTACCATGG-ATA--GACTGACTGCTTCTGTTATTTGA  1040

seq1  CAGCAACAACTACAAACAACAACAACAACAAAAATGACAGTG-ATGAGCT  1096
      |||| ||||||||| ||    ||| |||| |||||||| ||| |||||||
seq2  CAGCCACAACTACACAC----ACACCAACCAAAATGACCGTGAATGAGCT  1086

seq1  ATCATG-CTTGTGACAATTAGAAGAAACCTAAGCCAC  1132
      |||||| |||||||| |||||||| ||||||||||||
seq2  ATCATGCCTTGTGAC-ATTAGAAG-AACCTAAGCCAC  1121


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