BAC Information

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BAC

Clone NameB6Ng01-317I14
Chromosome1 (Build37)
Map Location 174,506,983 - 174,508,011
singlet/doubletsinglet
Overlap genenone
Upstream geneCd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916
Downstream geneSlamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317I14.g
ACCGA107655
length1,037
definitionB6Ng01-317I14.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattacaaattacggcaagaatggatgagtaagcagtgagatgga
agggtcagcagaaagggtgggaggggccagcggaagggtgggaggggcca
gtggaagggtgggaggggccagtggaggggttcccctatggagtcggaaa
gcagccatgctttgtggaggaagatttatgagctttccttcttctgccat
ttctctcagcacgttgcttgggggaaatatcagcactgtggaggagaaag
caatggaagtagttacaccattaccaagaaacacaaaccagcaatcacac
aaacaagtgaataatacacacggtgactgaaactgtcgtgtttcttagaa
tgtctaagaataaaagagaaacgctggcattagtcaagcttcttctggtc
tatgcaaaagcaacaacggcaaaaacataaaaacaaacctctttagcaaa
tagagaatatatcaaaaatatagcaaatacacattttatcttaaagttgt
ggtttgctcagacatcccccccataaaaaatgttgactacacttggagtc
tccatggaattattctgttatgcgttctcttccccagttgctcactaaaa
attcaaaatcagtggtgttacatcaacttagctgtcaccaaggactttcc
ttctgggacatcggaagagtggtttgtgacatcttgtcggaagtaatagt
tggtttaacaaataagggttgttttttttaaagcttgaacaggaatcttt
ataacaggagatgcatctgtctgctctttcaggaagcttttcctgaacat
ctgctgcacagctgtacagcaaagacccatcagttactaaagcatgccac
accctaccttcagagggcttctgatctcctttgtcaacagcagtagcagt
agggaaaggaacaggcagttaaggcagaggttttgtcttggaataactag
ccagaatgggaaggcttggatagtatggtgatttcctgggtcaggtcttc
ccaaagcaagagttctgtttcagctgttgttaatatt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_174506983_174508011
seq2: B6Ng01-317I14.g_67_1102 (reverse)

seq1  ATATTA--CACAGCTG-AACAGAACCTCTTGCTTTGGGAAGACCTG-CCC  46
      ||||||   ||||||| ||||||| ||||||||||||||||||||| |||
seq2  ATATTAACAACAGCTGAAACAGAA-CTCTTGCTTTGGGAAGACCTGACCC  49

seq1  AAGAAATCACCATACTATCC-AGCCTT-CCATTCCTGCTAGTTATTCCCA  94
      | |||||||||||||||||| |||||| ||||||  |||||||||||| |
seq2  AGGAAATCACCATACTATCCAAGCCTTCCCATTCTGGCTAGTTATTCCAA  99

seq1  GGCAAAACCTCTGCCTT-ACTGCCTGTTCCTTCCCCTACTGCTACTGCTG  143
      | ||||||||||||||| |||||||||||||| |||||||||||||||||
seq2  GACAAAACCTCTGCCTTAACTGCCTGTTCCTTTCCCTACTGCTACTGCTG  149

seq1  TTGAC-AAGGAGATCAGAAGCCCTTTGAAGGTAGGGTTGTGGCATGCTTT  192
      ||||| |||||||||||||||||| ||||||||||| |||||||||||||
seq2  TTGACAAAGGAGATCAGAAGCCCTCTGAAGGTAGGG-TGTGGCATGCTTT  198

seq1  AGTAACTGATGGGTCTTTGCTGTACAGCTGTGCAGCAGATGTTCAGG-AA  241
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGTAACTGATGGGTCTTTGCTGTACAGCTGTGCAGCAGATGTTCAGGAAA  248

seq1  AGCTTCCTGAAAGAGCAGACAGATGCATCTCCTGTTATAAAGATTCCTGT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCTGAAAGAGCAGACAGATGCATCTCCTGTTATAAAGATTCCTGT  298

seq1  TCAAGCTTTAAAAAAAACAACCCTTATTTGTTAAACCAACTATTACTTCC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCTTTAAAAAAAACAACCCTTATTTGTTAAACCAACTATTACTTCC  348

seq1  GACAAGATGTCACAAACCACTCTTCCGATGTCCCAGAAGGAAAGTCCTTG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGATGTCACAAACCACTCTTCCGATGTCCCAGAAGGAAAGTCCTTG  398

seq1  GTGACAGCTAAGTTGATGTAACACCACTGATTTTGAATTTTTAGTGAGCA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGCTAAGTTGATGTAACACCACTGATTTTGAATTTTTAGTGAGCA  448

seq1  ACTGGGGAAGAGAACGCATAACAGAATAATTCCATGGAGACTCCAAGTGT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGAAGAGAACGCATAACAGAATAATTCCATGGAGACTCCAAGTGT  498

seq1  AGTCAACATTTTTTATGGGGGGGATGTCTGAGCAAACCACAACTTTAAGA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAACATTTTTTATGGGGGGGATGTCTGAGCAAACCACAACTTTAAGA  548

seq1  TAAAATGTGTATTTGCTATATTTTTGATATATTCTCTATTTGCTAAAGAG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGTGTATTTGCTATATTTTTGATATATTCTCTATTTGCTAAAGAG  598

seq1  GTTTGTTTTTATGTTTTTGCCGTTGTTGCTTTTGCATAGACCAGAAGAAG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTTTATGTTTTTGCCGTTGTTGCTTTTGCATAGACCAGAAGAAG  648

seq1  CTTGACTAATGCCAGCGTTTCTCTTTTATTCTTAGACATTCTAAGAAACA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTAATGCCAGCGTTTCTCTTTTATTCTTAGACATTCTAAGAAACA  698

seq1  CGACAGTTTCAGTCACCGTGTGTATTATTCACTTGTTTGTGTGATTGCTG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAGTTTCAGTCACCGTGTGTATTATTCACTTGTTTGTGTGATTGCTG  748

seq1  GTTTGTGTTTCTTGGTAATGGTGTAACTACTTCCATTGCTTTCTCCTCCA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGTTTCTTGGTAATGGTGTAACTACTTCCATTGCTTTCTCCTCCA  798

seq1  CAGTGCTGATATTTCCCCCAAGCAACGTGCTGAGAGAAATGGCAGAAGAA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTGATATTTCCCCCAAGCAACGTGCTGAGAGAAATGGCAGAAGAA  848

seq1  GGAAAGCTCATAAATCTTCCTCCACAAAGCATGGCTGCTTTCCGACTCCA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCTCATAAATCTTCCTCCACAAAGCATGGCTGCTTTCCGACTCCA  898

seq1  TAGGGGAACCCCTCCACTGGCCCCTCCCACCCTTCCACTGGCCCCTCCCA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGAACCCCTCCACTGGCCCCTCCCACCCTTCCACTGGCCCCTCCCA  948

seq1  CCCTTCCGCTGGCCCCTCCCACCCTTTCTGCTGACCCTTCCATCTCACTG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCGCTGGCCCCTCCCACCCTTTCTGCTGACCCTTCCATCTCACTG  998

seq1  CTTACTCATCCATTCTTGCCGTAATTTGTAATGAATTC  1029
      ||||||||||||||||||||||||||||||||||||||
seq2  CTTACTCATCCATTCTTGCCGTAATTTGTAATGAATTC  1036