BAC Information

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BAC

Clone NameB6Ng01-317O20
Chromosome1 (Build37)
Map Location 82,643,994 - 82,763,137
singlet/doubletdoublet
Overlap geneCol4a3, 5230400G24Rik, Tm4sf20
Upstream geneEG621020, LOC433328, EG665145, Irs1, Rhbdd1, Col4a4
Downstream geneLOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317O20.bB6Ng01-317O20.g
ACCGA107947GA107948
length1,155166
definitionB6Ng01-317O20.b B6Ng01-317O20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,761,971 - 82,763,137)(82,643,994 - 82,644,159)
sequence
gaattcactaagtgtgttgagcatttgtttagtccttaaaacttttggcc
agttgttacatttcaagttagcctcccttcagaaatgggaattttacagg
aaactgcatataacacaacctcagggctcattactgattactttatgaag
tcatttgttttatgattttatgaccaaccccaatcagaggtgaacctttt
tatcttttgaaactgtaaccaagtaaaacattatgtagttaatctttaag
attatctactaaggggaaggggattgtcaatataaatgttacttgatcaa
gcattaaaagcattttaaaatgtttgttgtaaaatataatcagaaaggct
cttttactttatataaagttaactataagcctggtcttactcattctttt
tattgatttttacccattacataagggtacttttccaaagccagttatta
aaatcttagtggaaaacaaatggctgtaagtcaaactgattagaagactg
catgcaaaccctttacaaagcagagcttctgcactcatgctgagctatgg
ctttaagtgttgttctcatgttcaagaggactccccagagttaggcttct
atcacagtttttaactaaggttcttgtgtgcttcctttatgaaaatgtac
actttctagaactggaggaaagcctgggttcctgccaggaaaacaaactg
taattatttataaaaagaagagaaggaagactgaatttcacaaaatctta
tgcattcaaatatgtttaggaatactcaaccctaccattttagtgcaaaa
gtagccatagataatatgcaaatggattagggttccaataaaactttatt
tataaaaatgaggtgacagggtggggagtgcatccttaccagttcttgtc
ctacttcacttgttatataagatcagaaagcagtgtcttctgggaacacc
aaaaaagcttagtgtatacatgatgacaagatttcttttccctttccttc
tggtctttcagctatgcacaggggtagctggacatccatacgtatgtgtg
gctctgaattggaaggatcagtgtcagtgtataacaaggcttagcaacac
acgagtgaactggagtcagcatgcattagatggggtgattgtgtgctgaa
gctgc
cacctcagaagggaatggctcactttggccctgacagtccaatctcagaa
gactctgtaacagccttttgaaaagaaaagaaaagaagaggagaggagag
gagaggagaggagaggagaggagaggagaggagaggaaagaggagaggag
aggagaggaaagagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_82761971_82763137
seq2: B6Ng01-317O20.b_48_1202 (reverse)

seq1  GCAGCTTTCCCAGCACAC-ATCACCCCATCTAATCGCATGCTGACTTCAT  49
      |||||||   |||||||| ||||||||||||||| ||||||||||| || 
seq2  GCAGCTT---CAGCACACAATCACCCCATCTAAT-GCATGCTGACTCCAG  46

seq1  GTCACTTCGTGTTGTTGCTAAGCTTTGTTTATACACTGAACACTGATCCC  99
       |||| ||||| ||||||||||| ||| |||||||||| |||||||||| 
seq2  TTCAC-TCGTG-TGTTGCTAAGCCTTG-TTATACACTG-ACACTGATCC-  91

seq1  TTTCCAATTCAGAAGCCACACATACGTATGGATGTCCAGCTACCCCTGTG  149
       ||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  -TTCCAATTCAG-AGCCACACATACGTATGGATGTCCAGCTACCCCTGTG  139

seq1  CATAGCTGAAAGACCAGAAGGAAAGGGAAAAGAAATCTTTGTCATCATGT  199
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CATAGCTGAAAGACCAGAAGGAAAGGGAAAAGAAATC-TTGTCATCATGT  188

seq1  ATACACTAAGCTTTTTTGGTTGTTCCCAGAAGACACTGCTTTCTGATCTT  249
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATACACTAAGCTTTTTTGG-TGTTCCCAGAAGACACTGCTTTCTGATCTT  237

seq1  ATATAACAAGTGAAGTAGGACAAGAACTGGTAAGGATGCACTCCCCACCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACAAGTGAAGTAGGACAAGAACTGGTAAGGATGCACTCCCCACCC  287

seq1  TGTCACCTCATTTTTATAAATAAAGTTTTATTGGAACCCTAATCCATTTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCTCATTTTTATAAATAAAGTTTTATTGGAACCCTAATCCATTTG  337

seq1  CATATTATCTATGGCTACTTTTGCACTAAAATGGTAGGGTTGAGTATTCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTATCTATGGCTACTTTTGCACTAAAATGGTAGGGTTGAGTATTCC  387

seq1  TAAACATATTTGAATGCATAAGATTTTGTGAAATTCAGTCTTCCTTCTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATATTTGAATGCATAAGATTTTGTGAAATTCAGTCTTCCTTCTCT  437

seq1  TCTTTTTATAAATAATTACAGTTTGTTTTCCTGGCAGGAACCCAGGCTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTATAAATAATTACAGTTTGTTTTCCTGGCAGGAACCCAGGCTTT  487

seq1  CCTCCAGTTCTAGAAAGTGTACATTTTCATAAAGGAAGCACACAAGAACC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGTTCTAGAAAGTGTACATTTTCATAAAGGAAGCACACAAGAACC  537

seq1  TTAGTTAAAAACTGTGATAGAAGCCTAACTCTGGGGAGTCCTCTTGAACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTAAAAACTGTGATAGAAGCCTAACTCTGGGGAGTCCTCTTGAACA  587

seq1  TGAGAACAACACTTAAAGCCATAGCTCAGCATGAGTGCAGAAGCTCTGCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACAACACTTAAAGCCATAGCTCAGCATGAGTGCAGAAGCTCTGCT  637

seq1  TTGTAAAGGGTTTGCATGCAGTCTTCTAATCAGTTTGACTTACAGCCATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAGGGTTTGCATGCAGTCTTCTAATCAGTTTGACTTACAGCCATT  687

seq1  TGTTTTCCACTAAGATTTTAATAACTGGCTTTGGAAAAGTACCCTTATGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCCACTAAGATTTTAATAACTGGCTTTGGAAAAGTACCCTTATGT  737

seq1  AATGGGTAAAAATCAATAAAAAGAATGAGTAAGACCAGGCTTATAGTTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGTAAAAATCAATAAAAAGAATGAGTAAGACCAGGCTTATAGTTAA  787

seq1  CTTTATATAAAGTAAAAGAGCCTTTCTGATTATATTTTACAACAAACATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATATAAAGTAAAAGAGCCTTTCTGATTATATTTTACAACAAACATT  837

seq1  TTAAAATGCTTTTAATGCTTGATCAAGTAACATTTATATTGACAATCCCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATGCTTTTAATGCTTGATCAAGTAACATTTATATTGACAATCCCC  887

seq1  TTCCCCTTAGTAGATAATCTTAAAGATTAACTACATAATGTTTTACTTGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTTAGTAGATAATCTTAAAGATTAACTACATAATGTTTTACTTGG  937

seq1  TTACAGTTTCAAAAGATAAAAAGGTTCACCTCTGATTGGGGTTGGTCATA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTTTCAAAAGATAAAAAGGTTCACCTCTGATTGGGGTTGGTCATA  987

seq1  AAATCATAAAACAAATGACTTCATAAAGTAATCAGTAATGAGCCCTGAGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATAAAACAAATGACTTCATAAAGTAATCAGTAATGAGCCCTGAGG  1037

seq1  TTGTGTTATATGCAGTTTCCTGTAAAATTCCCATTTCTGAAGGGAGGCTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTATATGCAGTTTCCTGTAAAATTCCCATTTCTGAAGGGAGGCTA  1087

seq1  ACTTGAAATGTAACAACTGGCCAAAAGTTTTAAGGACTAAACAAATGCTC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAAATGTAACAACTGGCCAAAAGTTTTAAGGACTAAACAAATGCTC  1137

seq1  AACACACTTAGTGAATTC  1167
      ||||||||||||||||||
seq2  AACACACTTAGTGAATTC  1155

seq1: chr1_82643994_82644159
seq2: B6Ng01-317O20.g_74_239

seq1  CACCTCAGAAGGGAATGGCTCACTTTGGCCCTGACAGTCCAATCTCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCAGAAGGGAATGGCTCACTTTGGCCCTGACAGTCCAATCTCAGAA  50

seq1  GACTCTGTAACAGCCTTTTGAAAAGAAAAGAAAAGAAGAGGAGAGGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGTAACAGCCTTTTGAAAAGAAAAGAAAAGAAGAGGAGAGGAGAG  100

seq1  GAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAAAGAGGAGAGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAAAGAGGAGAGGAG  150

seq1  AGGAGAGGAAAGAGGA  166
      ||||||||||||||||
seq2  AGGAGAGGAAAGAGGA  166