BAC Information

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BAC

Clone NameB6Ng01-318E22
Chromosome1 (Build37)
Map Location 65,771,968 - 66,001,333
singlet/doubletdoublet
Overlap geneCrygf
Upstream geneCcnyl1, Fzd5, 9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775
Downstream geneLOC667781, EG667786, Mtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318E22.bB6Ng01-318E22.g
ACCGA108232GA108233
length1,0961,131
definitionB6Ng01-318E22.b B6Ng01-318E22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,000,241 - 66,001,333)(65,771,968 - 65,773,095)
sequence
gaattcaatactaactggaaatgacttgggaatagcttgcaatgaagtgg
ggtgatctgaaggtggtatcagggtagatttgaaatcaggatattgctag
atagaaaatgttgagacaaaggatatagaagacaaattacagatttataa
gaaactctgaaatgaagatgggagagttttatcagcaaaacagaaagccg
ggacatcctggtcctcactttcaaacacaatcaatgatgaagtcaactct
ctatggacaacagtatctctgggggaaacctggagagcaactaaaaagtg
cagcaatcatagatacagtggcaaggactcatgaatagaatgggctgaaa
aatgacactcttcattttacctcattcttcaaactaactcattgccatag
ggaatcccttttgccaagcttctccccatgggagaagagtgggaaacgag
tgggcttaagaaccattgacaatatgtatttcagcatccttggccatcac
tgcagaggactctcactggtttcaacagcaccagacgctggatgatatgg
acctggagataccaagatcagtctttattctcctagagtaggaacttttg
ttattggagactcaaggtgcttgcacacattagtatctgagaccgggcac
cgcaagaaaatgattcaatgccaacacacacatgctcacacgtttattgg
taagcagtgatcttcaactgagtaacctcaaaaggcttagctttataaca
ggtctcaattatatcaggtcttaattatatcacgcttattatatcacgtc
tctaggtacatactaaaatctcagcactcacgaagcagagggagggaggc
agaagttataggtaggcctaagctacatagtgaaaatttgactccaaaat
gggaagaaaaaaaaaaaaggaggagaaagagaatggggagagaaaagaga
aagaactgcaacggatacttcttagcattatgccatgaataacacttctg
tccttctccagctcaattactaccagcctttttattttctgcttgctaat
aaacatttgtttgtatcaaatttgttttaacctgccaaatagtctt
gaattcatttataggcacatatttgagtaggtttatatggataattaatg
ggaggtttgatgagagaaagttcttcttctgagtgtatagggctctctgc
gagcagcacagtattataagttctgagaagaaagctttttcctgcttgcc
ttctctcttttgcaagtgactgcatctactctgctgctgccgttaatgct
ttcaatatttggtaacattggaacccagattttcattcttgcaatatggg
atgaagaccggtagcatgtagtttgtgacagttgagaacgctgtcttgca
ttgtggtctaagcagcttctaggttctcagcatagatcgttttggggcta
cctaacccatactatgcaaacaaatcaaacacattcccttgtaaaatgta
gtcattatattctttatgttcctcaggagaatcctgaataatacatgctt
atctgtgcattgaggaagtctctctaaatgtcatgtttgtgtttcaggca
gaaaataatggctacaggttagtgtttactttgattctgaaagaaagaga
cacacagaaaaataaacccaagaaatttgtaattgcaatatgcagataag
taaaccctgtaattattttcaggacactttgacaaaacagttcctaacag
gctttgatacattcgatacaataatcagcagtgtgacctaaggtaactca
agtgacctctttggtttcttttcctacagagcaaaggagctgaaccaaat
aatttcaaaatattttcaaactctaacaatttatattatcttatgatatg
gaagagaaaaggaaaaattttggcttgttccctctcaatgggatgttgaa
atcgctttaaatgttattttaatgctacttatttactcctttgcctctgt
cactagttgctgtgtatatttagatattcttgggtgagtgcatatatatt
caaattgttatataatctggtcaatcgtcatttcctcttgctctactgtg
actgttttgacttaaggctttcctgtgtaatgtaaccataggagaatttg
tgaataactggaatggagtgaagcctagctttcccagagacttcacactg
gtcataaaattctgacatggtttaacagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_66000241_66001333
seq2: B6Ng01-318E22.b_45_1140 (reverse)

seq1  AAGACTATTTTGCAG--TAAAACAATTTGGATACAAACAAATGTTTATTA  48
      |||||||||| ||||  |||||||| || |||||||||||||||||||||
seq2  AAGACTATTTGGCAGGTTAAAACAAATTTGATACAAACAAATGTTTATTA  50

seq1  GCAAGCAGAAAAT-AAAAGGCTGGCCAGTAATTGAGCTGGAGAGGAACAG  97
      ||||||||||||| ||||||||||  ||||||||||||||||| | ||||
seq2  GCAAGCAGAAAATAAAAAGGCTGG-TAGTAATTGAGCTGGAGAAGGACAG  99

seq1  AAGTG-TATTCATGGCAT-ATGCTAAAGAAGTATCCGTTGCAGTTCTTTC  145
      ||||| |||||||||||| ||||| |||||||||||||||||||||||||
seq2  AAGTGTTATTCATGGCATAATGCT-AAGAAGTATCCGTTGCAGTTCTTTC  148

seq1  TCTTTTTCTCTTCCCCATTCTCTTTCTCCTCC--TTTTTTTTTTCTTCCC  193
      || ||||||| |||||||||||||||||||||  ||||||||||||||||
seq2  TC-TTTTCTC-TCCCCATTCTCTTTCTCCTCCTTTTTTTTTTTTCTTCCC  196

seq1  ATTTTGGAGTCAAATTTTCACTATGTAGCTTAGGCCTACCTATAACTTCT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGAGTCAAATTTTCACTATGTAGCTTAGGCCTACCTATAACTTCT  246

seq1  GCCTCCCTCCCTCTGCTTCCTGAGTGCTGAGATTTTAGTATGTACCTAGA  293
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCCTCCCTCCCTCTGCTTCGTGAGTGCTGAGATTTTAGTATGTACCTAGA  296

seq1  GACCTGATATAATAAGCCTGATATAATTAAGACCTGATATAATTGAGACC  343
      ||| ||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GACGTGATATAATAAGCGTGATATAATTAAGACCTGATATAATTGAGACC  346

seq1  TGTTATAAAGCTAAGCCTTTTGAGGTTACTCAGTTGAAGATCACTGCTTA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATAAAGCTAAGCCTTTTGAGGTTACTCAGTTGAAGATCACTGCTTA  396

seq1  CCAATAAACGTGTGAGCATGTGTGTGTTGGCATTGAATCATTTTCTTGCG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAAACGTGTGAGCATGTGTGTGTTGGCATTGAATCATTTTCTTGCG  446

seq1  GTGCCCGGTCTCAGATACTAATGTGTGCAAGCACCTTGAGTCTCCAATAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCGGTCTCAGATACTAATGTGTGCAAGCACCTTGAGTCTCCAATAA  496

seq1  CAAAAGTTCCTACTCTAGGAGAATAAAGACTGATCTTGGTATCTCCAGGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTTCCTACTCTAGGAGAATAAAGACTGATCTTGGTATCTCCAGGT  546

seq1  CCATATCATCCAGCGTCTGGTGCTGTTGAAACCAGTGAGAGTCCTCTGCA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATCATCCAGCGTCTGGTGCTGTTGAAACCAGTGAGAGTCCTCTGCA  596

seq1  GTGATGGCCAAGGATGCTGAAATACATATTGTCAATGGTTCTTAAGCCCA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGCCAAGGATGCTGAAATACATATTGTCAATGGTTCTTAAGCCCA  646

seq1  CTCGTTTCCCACTCTTCTCCCATGGGGAGAAGCTTGGCAAAAGGGATTCC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTTTCCCACTCTTCTCCCATGGGGAGAAGCTTGGCAAAAGGGATTCC  696

seq1  CTATGGCAATGAGTTAGTTTGAAGAATGAGGTAAAATGAAGAGTGTCATT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGCAATGAGTTAGTTTGAAGAATGAGGTAAAATGAAGAGTGTCATT  746

seq1  TTTCAGCCCATTCTATTCATGAGTCCTTGCCACTGTATCTATGATTGCTG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCCCATTCTATTCATGAGTCCTTGCCACTGTATCTATGATTGCTG  796

seq1  CACTTTTTAGTTGCTCTCCAGGTTTCCCCCAGAGATACTGTTGTCCATAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTTAGTTGCTCTCCAGGTTTCCCCCAGAGATACTGTTGTCCATAG  846

seq1  AGAGTTGACTTCATCATTGATTGTGTTTGAAAGTGAGGACCAGGATGTCC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGACTTCATCATTGATTGTGTTTGAAAGTGAGGACCAGGATGTCC  896

seq1  CGGCTTTCTGTTTTGCTGATAAAACTCTCCCATCTTCATTTCAGAGTTTC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTTTCTGTTTTGCTGATAAAACTCTCCCATCTTCATTTCAGAGTTTC  946

seq1  TTATAAATCTGTAATTTGTCTTCTATATCCTTTGTCTCAACATTTTCTAT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATCTGTAATTTGTCTTCTATATCCTTTGTCTCAACATTTTCTAT  996

seq1  CTAGCAATATCCTGATTTCAAATCTACCCTGATACCACCTTCAGATCACC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAATATCCTGATTTCAAATCTACCCTGATACCACCTTCAGATCACC  1046

seq1  CCACTTCATTGCAAGCTATTCCCAAGTCATTTCCAGTTAGTATTGAATTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCATTGCAAGCTATTCCCAAGTCATTTCCAGTTAGTATTGAATTC  1096

seq1: chr1_65771968_65773095
seq2: B6Ng01-318E22.g_65_1195

seq1  GAATTCATTTATAGGCACATATTTGAGTAGGTTTATATGGATAATTAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTATAGGCACATATTTGAGTAGGTTTATATGGATAATTAATG  50

seq1  GGAGGTTTGATGAGAGAAAGTTCTTCTTCTGAGTGTATAGGGCTCTCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTTTGATGAGAGAAAGTTCTTCTTCTGAGTGTATAGGGCTCTCTGC  100

seq1  GAGCAGCACAGTATTATAAGTTCTGAGAAGAAAGCTTTTTCCTGCTTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCACAGTATTATAAGTTCTGAGAAGAAAGCTTTTTCCTGCTTGCC  150

seq1  TTCTCTCTTTTGCAAGTGACTGCATCTACTCTGCTGCTGCCGTTAATGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTTTTGCAAGTGACTGCATCTACTCTGCTGCTGCCGTTAATGCT  200

seq1  TTCAATATTTGGTAACATTGGAACCCAGATTTTCATTCTTGCAATATGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATATTTGGTAACATTGGAACCCAGATTTTCATTCTTGCAATATGGG  250

seq1  ATGAAGACCGGTAGCATGTAGTTTGTGACAGTTGAGAACGCTGTCTTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGACCGGTAGCATGTAGTTTGTGACAGTTGAGAACGCTGTCTTGCA  300

seq1  TTGTGGTCTAAGCAGCTTCTAGGTTCTCAGCATAGATCGTTTTGGGGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTCTAAGCAGCTTCTAGGTTCTCAGCATAGATCGTTTTGGGGCTA  350

seq1  CCTAACCCATACTATGCAAACAAATCAAACACATTCCCTTGTAAAATGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACCCATACTATGCAAACAAATCAAACACATTCCCTTGTAAAATGTA  400

seq1  GTCATTATATTCTTTATGTTCCTCAGGAGAATCCTGAATAATACATGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTATATTCTTTATGTTCCTCAGGAGAATCCTGAATAATACATGCTT  450

seq1  ATCTGTGCATTGAGGAAGTCTCTCTAAATGTCATGTTTGTGTTTCAGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGCATTGAGGAAGTCTCTCTAAATGTCATGTTTGTGTTTCAGGCA  500

seq1  GAAAATAATGGCTACAGGTTAGTGTTTACTTTGATTCTGAAAGAAAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAATGGCTACAGGTTAGTGTTTACTTTGATTCTGAAAGAAAGAGA  550

seq1  CACACAGAAAAATAAACCCAAGAAATTTGTAATTGCAATATGCAGATAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGAAAAATAAACCCAAGAAATTTGTAATTGCAATATGCAGATAAG  600

seq1  TAAACCCTGTAATTATTTTCAGGACACTTTGACAAAACAGTTCCTAACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCCTGTAATTATTTTCAGGACACTTTGACAAAACAGTTCCTAACAG  650

seq1  GCTTTGATACATTCGATACAATAATCAGCAGTGTGACCTAAGGTAACTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGATACATTCGATACAATAATCAGCAGTGTGACCTAAGGTAACTCA  700

seq1  AGTGACCTCTTTGGTTTCTTTTCCTACAGAGCAAAGGAGCTGAACCAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACCTCTTTGGTTTCTTTTCCTACAGAGCAAAGGAGCTGAACCAAAT  750

seq1  AATTTCAAAATATTTTCAAACTCTAACAATTTATATTATCTTATGATATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAAAATATTTTCAAACTCTAACAATTTATATTATCTTATGATATG  800

seq1  GAAGAGAAAAGGAAAAATTTTGGCTTGTTCCCTCTCAATGGGATGTTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAAAAGGAAAAATTTTGGCTTGTTCCCTCTCAATGGGATGTTGAA  850

seq1  ATCGCTTTAAATGTTATTTTAATGCTACTTATTTACTCCTTTGCCTCTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCTTTAAATGTTATTTTAATGCTACTTATTTACTCCTTTGCCTCTGT  900

seq1  CACTAGTTGCTGTGTATATTTAGATATTCTTGGGTGAGTGCATATATATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGTTGCTGTGTATATTTAGATATTCTTGGGTGAGTGCATATATATT  950

seq1  CAAATTTGTTATATAATCTTGGTCAATCGTCATTT-CTCTTGCCTCTACT  999
      |||| ||||||||||||| |||||||||||||||| |||||| |||||||
seq2  CAAA-TTGTTATATAATC-TGGTCAATCGTCATTTCCTCTTG-CTCTACT  997

seq1  GTGACTGTTTTGACTTAAAGCCTTCCTTGTGTAATGTAACCATA-GAGAA  1048
      |||||||||||||||||| || |||| ||||||||||||||||| |||||
seq2  GTGACTGTTTTGACTTAAGGCTTTCC-TGTGTAATGTAACCATAGGAGAA  1046

seq1  TTTGTGA--TACTGAAAT-GAGTGAAAGCTAGCTTTTCCCAAGACTT-AC  1094
      |||||||   |||| ||| |||||||  |||||||| ||  |||||| ||
seq2  TTTGTGAATAACTGGAATGGAGTGAAGCCTAGCTTTCCCAGAGACTTCAC  1096

seq1  ACTGGTCATAAAAATTCT-ACAT-GTTTAACAGGGG  1128
      ||||||||| |||||||| |||| ||||||||||||
seq2  ACTGGTCAT-AAAATTCTGACATGGTTTAACAGGGG  1131