BAC Information

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BAC

Clone NameB6Ng01-319I02
Chromosome1 (Build37)
Map Location 77,072,341 - 77,224,244
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039137, Tfdp1-ps
Downstream geneEpha4, LOC100039330, Pax3, LOC100039210
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319I02.bB6Ng01-319I02.g
ACCGA109117GA109118
length1,082136
definitionB6Ng01-319I02.b B6Ng01-319I02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,223,155 - 77,224,244)(77,072,341 - 77,072,476)
sequence
gaattcaccggcgagaagtattgggtttatgggtcataggttgagggtaa
atcactgaagcagaataactattgattataaagtcagggacaaagtagct
ttgtcccttttccatgataaagaagaatctgttgtgtagagctgtggtca
gaaaggggaaacctcctatcaaatggggcgccgtgtgcctgcaatctctt
caacacaacgctaacttcctccagaggcattcagagcaaaaggatccttc
acagaccatttctctttcccagcttcaaaggcaggaggctgcggtgtaat
cctttggttagttccagagtcaccgggaaagcccacactcctcaggctgc
ctggctgctttgtgggtggaatgcttcaacttgacgtgaacaggaaggtg
caatcagtctcagacggggaatgttggaaatctctttctcaactgctcgg
tggggaaagacaggagagaagggaagggtttactcaataccagagtgctt
cgtaaacaagtgcccatggtcgtttcctgcagggaagtggaaagattagc
ctggtttatatggagctgaggagagggcttagcacacgttgtggctgatt
aaacaagagggagtcattgctcgggccccatctagataatctccagccat
tatcttttataataacagggactcttgagggatccatttttctctgactg
atgtctgtgaaggggtagagggcactcttcccgtgcatgccatatgtggc
cattcgattgccactttcccgccaaagtcacttgacttgttctttacttt
ttaagatcatacacaagatactattacagagcctaattgtaagcttttaa
aaccgtgtgttaggaagctcaggatcactttcaggttcttagaagcaaag
tctctcttgccaagtgtccctagggttctttgttactagcagtgggcact
tggccagatgctgcagtgaagctttataaacagacagatatggactttag
tgtagtattgtgcagacttttaattttcagaaatatttttttacttatca
agaaagtcaaatcaatttgtgacctcagttga

aggtcagcgatttaagttggtttcctagacatgaggtgactgttccattt
ttaaaaggaaaaaaaaaatctttcactcccatatatcttttttttttaag
aggggtagtatgattatagaggggtagtatgtttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_77223155_77224244
seq2: B6Ng01-319I02.b_49_1130 (reverse)

seq1  TCAACTGA-GTCACAAATTGATTTGACTCTC-TGATAGGTTAAAAAAATA  48
      |||||||| ||||||||||||||||||| || ||||| | ||||||||||
seq2  TCAACTGAGGTCACAAATTGATTTGACTTTCTTGATAAG-TAAAAAAATA  49

seq1  ATTTCCTGAAAATTAAAAGTCTGGCACAATACTACACTAAAAGTCCATTT  98
        || ||||||||||||||||| ||||||||||||||| ||||||||  |
seq2  --TTTCTGAAAATTAAAAGTCT-GCACAATACTACACT-AAAGTCCA--T  93

seq1  ATCTTGTCTGTTTTTATAAAGCTTCACTGCAGCATCTGGCCAAGTGCCCA  148
      ||| ||||||  ||||||||||||||||||||||||||||||||||||||
seq2  ATC-TGTCTG--TTTATAAAGCTTCACTGCAGCATCTGGCCAAGTGCCCA  140

seq1  CTGCTAGTAACAAAGAACCCTAGGGACACTTGGCAAGAGAGACTTTGCTT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAGTAACAAAGAACCCTAGGGACACTTGGCAAGAGAGACTTTGCTT  190

seq1  CTAAGAACCTGAAAGTGATCCTGAGCTTCCTAACACACGGTTTTAAAAGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAACCTGAAAGTGATCCTGAGCTTCCTAACACACGGTTTTAAAAGC  240

seq1  TTACAATTAGGCTCTGTAATAGTATCTTGTGTATGATCTTAAAAAGTAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATTAGGCTCTGTAATAGTATCTTGTGTATGATCTTAAAAAGTAAA  290

seq1  GAACAAGTCAAGTGACTTTGGCGGGAAAGTGGCAATCGAATGGCCACATA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGTCAAGTGACTTTGGCGGGAAAGTGGCAATCGAATGGCCACATA  340

seq1  TGGCATGCACGGGAAGAGTGCCCTCTACCCCTTCACAGACATCAGTCAGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGCACGGGAAGAGTGCCCTCTACCCCTTCACAGACATCAGTCAGA  390

seq1  GAAAAATGGATCCCTCAAGAGTCCCTGTTATTATAAAAGATAATGGCTGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATGGATCCCTCAAGAGTCCCTGTTATTATAAAAGATAATGGCTGG  440

seq1  AGATTATCTAGATGGGGCCCGAGCAATGACTCCCTCTTGTTTAATCAGCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATCTAGATGGGGCCCGAGCAATGACTCCCTCTTGTTTAATCAGCC  490

seq1  ACAACGTGTGCTAAGCCCTCTCCTCAGCTCCATATAAACCAGGCTAATCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACGTGTGCTAAGCCCTCTCCTCAGCTCCATATAAACCAGGCTAATCT  540

seq1  TTCCACTTCCCTGCAGGAAACGACCATGGGCACTTGTTTACGAAGCACTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTTCCCTGCAGGAAACGACCATGGGCACTTGTTTACGAAGCACTC  590

seq1  TGGTATTGAGTAAACCCTTCCCTTCTCTCCTGTCTTTCCCCACCGAGCAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTGAGTAAACCCTTCCCTTCTCTCCTGTCTTTCCCCACCGAGCAG  640

seq1  TTGAGAAAGAGATTTCCAACATTCCCCGTCTGAGACTGATTGCACCTTCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAAGAGATTTCCAACATTCCCCGTCTGAGACTGATTGCACCTTCC  690

seq1  TGTTCACGTCAAGTTGAAGCATTCCACCCACAAAGCAGCCAGGCAGCCTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACGTCAAGTTGAAGCATTCCACCCACAAAGCAGCCAGGCAGCCTG  740

seq1  AGGAGTGTGGGCTTTCCCGGTGACTCTGGAACTAACCAAAGGATTACACC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGTGGGCTTTCCCGGTGACTCTGGAACTAACCAAAGGATTACACC  790

seq1  GCAGCCTCCTGCCTTTGAAGCTGGGAAAGAGAAATGGTCTGTGAAGGATC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTCCTGCCTTTGAAGCTGGGAAAGAGAAATGGTCTGTGAAGGATC  840

seq1  CTTTTGCTCTGAATGCCTCTGGAGGAAGTTAGCGTTGTGTTGAAGAGATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCTCTGAATGCCTCTGGAGGAAGTTAGCGTTGTGTTGAAGAGATT  890

seq1  GCAGGCACACGGCGCCCCATTTGATAGGAGGTTTCCCCTTTCTGACCACA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCACACGGCGCCCCATTTGATAGGAGGTTTCCCCTTTCTGACCACA  940

seq1  GCTCTACACAACAGATTCTTCTTTATCATGGAAAAGGGACAAAGCTACTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTACACAACAGATTCTTCTTTATCATGGAAAAGGGACAAAGCTACTT  990

seq1  TGTCCCTGACTTTATAATCAATAGTTATTCTGCTTCAGTGATTTACCCTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTGACTTTATAATCAATAGTTATTCTGCTTCAGTGATTTACCCTC  1040

seq1  AACCTATGACCCATAAACCCAATACTTCTCGCCGGTGAATTC  1090
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTATGACCCATAAACCCAATACTTCTCGCCGGTGAATTC  1082


seq1: chr1_77072341_77072476
seq2: B6Ng01-319I02.g_77_212

seq1  AGGTCAGCGATTTAAGTTGGTTTCCTAGACATGAGGTGACTGTTCCATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGCGATTTAAGTTGGTTTCCTAGACATGAGGTGACTGTTCCATTT  50

seq1  TTAAAAGGAAAAAAAAAATCTTTCACTCCCATATATCTTTTTTTTTTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGGAAAAAAAAAATCTTTCACTCCCATATATCTTTTTTTTTTAAG  100

seq1  AGGGGTAGTATGATTATAGAGGGGTAGTATGTTTAT  136
      ||||||||||||||||||||||||||||||||||||
seq2  AGGGGTAGTATGATTATAGAGGGGTAGTATGTTTAT  136


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