BAC Information

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BAC

Clone NameB6Ng01-319K02
Chromosome1 (Build37)
Map Location 188,369,668 - 188,512,884
singlet/doubletdoublet
Overlap geneTgfb2
Upstream geneLOC677785, Lyplal1
Downstream geneRrp15, LOC666832, LOC100042375, D1Pas1, Spata17, Gpatch2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319K02.bB6Ng01-319K02.g
ACCGA109211GA109212
length1,0671,114
definitionB6Ng01-319K02.b B6Ng01-319K02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(188,369,668 - 188,370,754)(188,511,754 - 188,512,884)
sequence
gaattctcctttaccatgcacatacttaaactaagttgtattattattat
tacctattaaaggaaaacacagatttccctggttcacttcttcaggttga
ccccaaatgtgctccacccccagggctgctgccctcactctgattctcct
caaaacgttgggatcctaattcacccagattattagcaattttcttttct
tattgcatgatttctgtctgcccctgggtggttttgttttaattagaaga
aaaatagaatggaaaagtttcaattgtaaacacacacggaggttctgttg
gcaaccgtgagcttggcagacagaaagccgtggtcagcttagctacactt
tattggctcacaaacaagaacaattttgaaggaaattagaagacattttt
taaagtgacaattttctccatcaggtagattacactatttcctgttattt
tatgatactgatatttcacttatacatttttctccagctcccataaaatt
ttccatctggagtgaacgtttctaatctttttgtaagccgctggattcaa
tatctcctttctgcttgcttgcttgcttgctttctttctttctttctttc
tttctttctttctttctttctttctttctttcttcccctccatccctccc
tcccttccttccttccttcctttctcgttctttcttttcttcttcctcta
ttttttaagtgtcagtttccaggaacttctatcagatacccgcgagcata
aacttacaatagctaaagagcttccgcatttagaatgccagccctgcaga
cagaggtgggggttagaaaccagactcaaatactgaagttgcctttgccg
gaaaccttagctcagcctccaacagcttacaacgaaaatccttcaaaatt
aagagttgtagggtttccagctgatagacattttccacacagaggatgaa
gagcagtacagccagtcttttctttcaaagggagacagaacgcagttggc
tgtgtgtggcaagggagaggaataaatgctctcgaaaagctaatgtacca
agcagatctttcctgac

ggggtgacctggcttttctccaccctaaccacaggctccaaacctgtgct
tttgccctctctggggacccaagcccattcgttttgtaagtctttcacct
actgcctcagtagaaggttcctcccgctctcctgcccagcaaacaggctg
agttctagctagcaatcggtttgagccctttcccagtttctagacaagtt
tttctttttgcattctcccatttggttggagttattttcagttagtaact
gcccagaatttccctcttcatttagtgaataagacatgctgtgaaactcc
agcactcctctgggatgctgcagttgtcttgaatatctctgaaggtgaag
gaagagatacagggatctggctttgatagcttcttgtgtactaggaggct
tttccaacccacatgacaaatctctttcaggtcttccaggcaagacccct
taacagaggaccaggagatggctcagtcagtaaagtatttgctttgtact
taggaggacttgggtgcagttctcggaacacatgtaaaaatggcaggcac
gatggtacacacatgtaacccagggagttgaagacaggagcatacctggg
cctcattggccagctcaagagtcatccctgtcactttgtttgaactgttc
ctccattccaaagagacattgggcacagacagcagcagtagggtgggata
tctgcctttctttatcctgtaacttgagggctggtgacatctaggtgtct
gacactggcgatggggctgatctgtacaatgccctggaagagaggaagca
ttcagtctccttcccatgcttgtcagagatggtgatcttgtagaacatca
tccccgattatctgtctatctatctatctatctatctatctatctatcta
tctatctatctatctatctatatgaggttaacttgtgtaagtgttttcta
tataatacaaagctggtctccaaaatctgttcaaccccagctgggctggc
ctagatggctacagatgccgctcaacacaaacttactaaactcatgagtt
tttaaaatcaattatgttcttcccaaggagatctttgtaatggcacatgc
cttttggcaaatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_188369668_188370754
seq2: B6Ng01-319K02.b_47_1113

seq1  GAATTCTCCTTTACCATGCACATACTTAAACTAAGTTGTATTATTATTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTTACCATGCACATACTTAAACTAAGTTGTATTATTATTAT  50

seq1  TACCTATTAAAGGAAAACACAGATTTCCCTGGTTCACTTCTTCAGGTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTATTAAAGGAAAACACAGATTTCCCTGGTTCACTTCTTCAGGTTGA  100

seq1  CCCCAAATGTGCTCCACCCCCAGGGCTGCTGCCCTCACTCTGATTCTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAATGTGCTCCACCCCCAGGGCTGCTGCCCTCACTCTGATTCTCCT  150

seq1  CAAAACGTTGGGATCCTAATTCACCCAGATTATTAGCAATTTTCTTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACGTTGGGATCCTAATTCACCCAGATTATTAGCAATTTTCTTTTCT  200

seq1  TATTGCATGATTTCTGTCTGCCCCTGGGTGGTTTTGTTTTAATTAGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCATGATTTCTGTCTGCCCCTGGGTGGTTTTGTTTTAATTAGAAGA  250

seq1  AAAATAGAATGGAAAAGTTTCAATTGTAAACACACACGGAGGTTCTGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGAATGGAAAAGTTTCAATTGTAAACACACACGGAGGTTCTGTTG  300

seq1  GCAACCGTGAGCTTGGCAGACAGAAAGCCGTGGTCAGCTTAGCTACACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCGTGAGCTTGGCAGACAGAAAGCCGTGGTCAGCTTAGCTACACTT  350

seq1  TATTGGCTCACAAACAAGAACAATTTTGAAGGAAATTAGAAGACATTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGCTCACAAACAAGAACAATTTTGAAGGAAATTAGAAGACATTTTT  400

seq1  TAAAGTGACAATTTTCTCCATCAGGTAGATTACACTATTTCCTGTTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTGACAATTTTCTCCATCAGGTAGATTACACTATTTCCTGTTATTT  450

seq1  TATGATACTGATATTTCACTTATACATTTTTCTCCAGCTCCCATAAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATACTGATATTTCACTTATACATTTTTCTCCAGCTCCCATAAAATT  500

seq1  TTCCATCTGGAGTGAACGTTTCTAATCTTTTTGTAAGCCGCTGGATTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCTGGAGTGAACGTTTCTAATCTTTTTGTAAGCCGCTGGATTCAA  550

seq1  TATCTCCTTTCTGCTTGCTTGCTTGCTTGCTTTCTTTCTTTCTTTCTTTC  600
      |||||||||||||||||||||||||||||    |||||||||||||||||
seq2  TATCTCCTTTCTGCTTGCTTGCTTGCTTG----CTTTCTTTCTTTCTTTC  596

seq1  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCCCTCCATCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCCCTCCATCCC  646

seq1  TCCCTCCCTTCCTTCCTTCCTTCCTTTCTCGTTCTTTCTTTTCTTCTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCTTCCTTCCTTCCTTCCTTTCTCGTTCTTTCTTTTCTTCTTCC  696

seq1  TCTATTTTTTAAGTGTCAGTTTCCAGGAACTTCTATCAGATACCCGCGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTTTAAGTGTCAGTTTCCAGGAACTTCTATCAGATACCCGCGAG  746

seq1  CATAAACTTACAATAGCTAAAGAGCTTCCGCATTTAGAATGCCAGCCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACTTACAATAGCTAAAGAGCTTCCGCATTTAGAATGCCAGCCCTG  796

seq1  CAGGACAGAGGTGGGGGTTAGAAACCAGACTCAAATACTGAAGTTGCCTT  850
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CA-GACAGAGGTGGGGGTTAGAAACCAGACTCAAATACTGAAGTTGCCTT  845

seq1  TGCCGGAAACCTTAGCTCAGGCCTCCAACAGCTTACAACGAAAATCCTTC  900
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGCCGGAAACCTTAGCTCA-GCCTCCAACAGCTTACAACGAAAATCCTTC  894

seq1  AAAATTAAGAGTTGTAGGGTTTCCAGCTGATAGACATTTTCCACACAGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAAGAGTTGTAGGGTTTCCAGCTGATAGACATTTTCCACACAGAG  944

seq1  GATGAAAGAGCAGGTACAGCCAGTC-TTTCTTTCAAAGGGGAGGAACAGG  999
      |||| ||||||| |||||||||||| ||||||||||| |||||  ||| |
seq2  GATG-AAGAGCA-GTACAGCCAGTCTTTTCTTTCAAA-GGGAG--ACA-G  988

seq1  AACGGCAGTTGGCTGTGGTTGTGGGCAAGGGGAGAGGGATAAATGCTCTC  1049
      ||| |||||||||||||  ||| ||||| |||||||| ||||||||||||
seq2  AAC-GCAGTTGGCTGTG--TGT-GGCAA-GGGAGAGGAATAAATGCTCTC  1033

seq1  GAAAAGCTTAAATTGTACCAAGCAGATCTTTTCCTGAC  1087
      ||||||||   | ||||||||||||||| |||||||||
seq2  GAAAAGCT---AATGTACCAAGCAGATC-TTTCCTGAC  1067


seq1: chr1_188511754_188512884
seq2: B6Ng01-319K02.g_74_1187 (reverse)

seq1  ACATTTGC--AAAAGCATGTTGCCATTTACAAAGATCTCCCTTGGGAACC  48
      ||||||||  ||| ||||| ||||| |||||||||||| |||||||||  
seq2  ACATTTGCCAAAAGGCATG-TGCCA-TTACAAAGATCT-CCTTGGGAAGA  47

seq1  ACATAATTGAATTTTTAAAAACTCATGAAGTTTTAAGTAAGTTTGTGTTG  98
      ||||||||||  ||||||||||||||| |||||  |||||||||||||||
seq2  ACATAATTGA--TTTTAAAAACTCATG-AGTTT--AGTAAGTTTGTGTTG  92

seq1  AGCGGCATCTGTAGCCATCCTAGGCCAGGCCCAGCCTGGGGGTTGAACAG  148
      |||||||||||||||||| |||||||| |||||||   ||||||||||||
seq2  AGCGGCATCTGTAGCCAT-CTAGGCCA-GCCCAGC--TGGGGTTGAACAG  138

seq1  ATTTTTGGAGACCAGCTTTTGTATTATATTAGAAAACACTTACACAAGTT  198
      | |||||||||||||| ||||||||||| |||||||||||||||||||||
seq2  A-TTTTGGAGACCAGC-TTTGTATTATA-TAGAAAACACTTACACAAGTT  185

seq1  AACCTCATATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT  248
      ||||||||    ||||||||||||||||||||||||||||||||||||||
seq2  AACCTCAT----ATAGATAGATAGATAGATAGATAGATAGATAGATAGAT  231

seq1  AGATAGATAGATAGATAGACAGATAATCGGGGATGATGTTCTACAAGATC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGATAGATAGATAGACAGATAATCGGGGATGATGTTCTACAAGATC  281

seq1  ACCATCTCTGACAAGCATGGGAAGGAGACTGAATGCTTCCTCTCTTCCAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTCTGACAAGCATGGGAAGGAGACTGAATGCTTCCTCTCTTCCAG  331

seq1  GGCATTGTACAGATCAGCCCCATCGCCAGTGTCAGACACCTAGATGTCAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTGTACAGATCAGCCCCATCGCCAGTGTCAGACACCTAGATGTCAC  381

seq1  CAGCCCTCAAGTTACAGGATAAAGAAAGGCAGATATCCCACCCTACTGCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTCAAGTTACAGGATAAAGAAAGGCAGATATCCCACCCTACTGCT  431

seq1  GCTGTCTGTGCCCAATGTCTCTTTGGAATGGAGGAACAGTTCAAACAAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTGTGCCCAATGTCTCTTTGGAATGGAGGAACAGTTCAAACAAAG  481

seq1  TGACAGGGATGACTCTTGAGCTGGCCAATGAGGCCCAGGTATGCTCCTGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGGATGACTCTTGAGCTGGCCAATGAGGCCCAGGTATGCTCCTGT  531

seq1  CTTCAACTCCCTGGGTTACATGTGTGTACCATCGTGCCTGCCATTTTTAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACTCCCTGGGTTACATGTGTGTACCATCGTGCCTGCCATTTTTAC  581

seq1  ATGTGTTCCGAGAACTGCACCCAAGTCCTCCTAAGTACAAAGCAAATACT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTCCGAGAACTGCACCCAAGTCCTCCTAAGTACAAAGCAAATACT  631

seq1  TTACTGACTGAGCCATCTCCTGGTCCTCTGTTAAGGGGTCTTGCCTGGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGACTGAGCCATCTCCTGGTCCTCTGTTAAGGGGTCTTGCCTGGAA  681

seq1  GACCTGAAAGAGATTTGTCATGTGGGTTGGAAAAGCCTCCTAGTACACAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGAAAGAGATTTGTCATGTGGGTTGGAAAAGCCTCCTAGTACACAA  731

seq1  GAAGCTATCAAAGCCAGATCCCTGTATCTCTTCCTTCACCTTCAGAGATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTATCAAAGCCAGATCCCTGTATCTCTTCCTTCACCTTCAGAGATA  781

seq1  TTCAAGACAACTGCAGCATCCCAGAGGAGTGCTGGAGTTTCACAGCATGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGACAACTGCAGCATCCCAGAGGAGTGCTGGAGTTTCACAGCATGT  831

seq1  CTTATTCACTAAATGAAGAGGGAAATTCTGGGCAGTTACTAACTGAAAAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCACTAAATGAAGAGGGAAATTCTGGGCAGTTACTAACTGAAAAT  881

seq1  AACTCCAACCAAATGGGAGAATGCAAAAAGAAAAACTTGTCTAGAAACTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCAACCAAATGGGAGAATGCAAAAAGAAAAACTTGTCTAGAAACTG  931

seq1  GGAAAGGGCTCAAACCGATTGCTAGCTAGAACTCAGCCTGTTTGCTGGGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGGCTCAAACCGATTGCTAGCTAGAACTCAGCCTGTTTGCTGGGC  981

seq1  AGGAGAGCGGGAGGAACCTTCTACTGAGGCAGTAGGTGAAAGACTTACAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGCGGGAGGAACCTTCTACTGAGGCAGTAGGTGAAAGACTTACAA  1031

seq1  AACGAATGGGCTTGGGTCCCCAGAGAGGGCAAAAGCACAGGTTTGGAGCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAATGGGCTTGGGTCCCCAGAGAGGGCAAAAGCACAGGTTTGGAGCC  1081

seq1  TGTGGTTAGGGTGGAGAAAAGCCAGGTCACCCC  1131
      |||||||||||||||||||||||||||||||||
seq2  TGTGGTTAGGGTGGAGAAAAGCCAGGTCACCCC  1114


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