BAC Information

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BAC

Clone NameB6Ng01-319N24
Chromosome1 (Build37)
Map Location 65,380,692 - 65,381,792
singlet/doubletsinglet
Overlap genePthr2
Upstream geneLOC100043124, Creb1, 2310038H17Rik, Ccnyl1, Fzd5, 9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3
Downstream geneLOC100042716, EG628894, LOC100043165, LOC383520, EG667775, Crygf, LOC667781, EG667786, Mtap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319N24.bB6Ng01-319N24.g
ACCGA109397GA109398
length1,1061,200
definitionB6Ng01-319N24.b B6Ng01-319N24.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcccgggttgcctgtggtgtgtgaaggcaggctgagattgtgaggg
aagtgaggctgtttccaggaataggttcttttttgtgagaacagtgtggg
tgaacgaagacattttcttttcttatcccttcagaaagacacaaagcaga
ccaaatgtttgtttctgtgtaagaatcagacgctgagaagttactccagg
ttgatactggattatgatcgggcatgccagtgtttgcatgactttcaaac
tagacaactggacatgatgagtgctagtgagtatttgtgatggcagaata
atggagcccctaaggaacccactgctagcacctggtggtatgcccgtata
tgctatgctacatagccaaacggacactgcaaatggaattaagcttatga
acattaaaatgtggaagctattctggatcatctaggttggcacagtataa
tcatctggttcttgaggaatggaggaggaggaaggtagcagaatcatttg
agctgtatgacaaggagaactgcgagagattcaagatgcaagaaggacct
agtctccactgttgactgtgaagaggaaggaaggaggtcaggagacagtg
atgtcactcacctgccttctaaggctgggcaagttcactgcacacagcca
gaaagaaatcatttttcccagtggatgaactgaacgctgccaactattga
aacgagcaaacaaatatacataccttctgagactccagaagagagcccag
cctgtcagctcttggttttgcccctgtgagttcataagcaaaggctctac
tgagccagggttcagaccttgtttaacactgtgaaatttgtcatggaaaa
tgaatgcagcactcacagcaagtgtctctgttggggacgtgggggtgtga
tctggctgacaagcttctcttcttggagtttcagtatatgacataaggaa
aggagccctgtagagtcccagcactgatggtgagcattagttaagcctta
atcagtgtcagggctgtgtcaggagcatggctaaatgccacgagacaaaa
gagcttcacccttgggttccttcaattcctctgacttaaggaaacatcag
gaaaaa
gaattctttgtttagctctgtaccccatttttaataaggttatttggctt
tccggggtctaccttcttcagttatttatatatattagatattagccctc
tctcgaatttaggataggtaaagatcttttcccaatctcttggtttcatt
tttgtcttattaacactgtcctttgacttacagaagctttgcaattttat
gaagtcccatttgtcgattcctgatcttacagcacgagccatgggtgttc
tgttcaggatcttttcccctgtgcccatatgttcaaggctcttccccact
ttctcctctataagtttcagtgtctctggttttatatggagttccttgat
ccacttagacttgagctttatacaaggacataagaatggatcaattcaca
ttcttctataagctaactgccagttgagccaacaccatttgctgaaaatg
ctgtcctttttccactggatggttttagctcctttgtcaaagatgaagtg
accataggtgtatgagttcattactgggtcttcaattctattccattgat
ctacctatctatcactgtgccagtactatgcagtttttatcacaattgct
ctgtagtacagcttgaggtcagacatggtgattccaccaaaggttctttt
attgttgagaatagtttttgctatcctaggttttttattattccaggtga
atttgcaaattgtcctttctaactctgtgaagaattgagttgaaattttg
attggaattgcattgaatctgtagactgctttcagcaagatagccatttt
tactatattaatcctgccaatccgtgagcatgggatatctttctgtcttc
tgagatctttaatttctttctgcagagacttgaagttatacagatatttc
accttgcttagtgagagtcacaccaaggtatgtaatattatttgtgacta
tggtgaagggtgtcatttctctaatttctttctctggctgttcattcttt
gaagaagaggaagccacctgaatttgtgtttaagttaatttataaacagc
tactttgctgaggttgtttttatcaagttagagtcttctggtggaaattt
cggtcactagattactaagcaaatcactgcaaaatgaattttgaactctc
tttcaattgtatccgtttgactcaccttggtgtggtgcgtaaagatagtc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_65380692_65381792
seq2: B6Ng01-319N24.b_46_1151

seq1  GAATTCCCGGGTTGCCTGTGGTGTGTGAAGGCAGGCTGAGATTGTGAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCGGGTTGCCTGTGGTGTGTGAAGGCAGGCTGAGATTGTGAGGG  50

seq1  AAGTGAGGCTGTTTCCAGGAATAGGTTCTTTTTTGTGAGAACAGTGTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGGCTGTTTCCAGGAATAGGTTCTTTTTTGTGAGAACAGTGTGGG  100

seq1  TGAACGAAGACATTTTCTTTTCTTATCCCTTCAGAAAGACACAAAGCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACGAAGACATTTTCTTTTCTTATCCCTTCAGAAAGACACAAAGCAGA  150

seq1  CCAAATGTTTGTTTCTGTGTAAGAATCAGACGCTGAGAAGTTACTCCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGTTTGTTTCTGTGTAAGAATCAGACGCTGAGAAGTTACTCCAGG  200

seq1  TTGATACTGGATTATGATCGGGCATGCCAGTGTTTGCATGACTTTCAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATACTGGATTATGATCGGGCATGCCAGTGTTTGCATGACTTTCAAAC  250

seq1  TAGACAACTGGACATGATGAGTGCTAGTGAGTATTTGTGATGGCAGAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAACTGGACATGATGAGTGCTAGTGAGTATTTGTGATGGCAGAATA  300

seq1  ATGGAGCCCCTAAGGAACCCACTGCTAGCACCTGGTGGTATGCCCGTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGCCCCTAAGGAACCCACTGCTAGCACCTGGTGGTATGCCCGTATA  350

seq1  TGCTATGCTACATAGCCAAACGGACACTGCAAATGGAATTAAGCTTATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGCTACATAGCCAAACGGACACTGCAAATGGAATTAAGCTTATGA  400

seq1  ACATTAAAATGTGGAAGCTATTCTGGATCATCTAGGTTGGCACAGTATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAAAATGTGGAAGCTATTCTGGATCATCTAGGTTGGCACAGTATAA  450

seq1  TCATCTGGTTCTTGAGGAATGGAGGAGGAGGAAGGTAGCAGAATCATTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGGTTCTTGAGGAATGGAGGAGGAGGAAGGTAGCAGAATCATTTG  500

seq1  AGCTGTATGACAAGGAGAACTGCGAGAGATTCAAGATGCAAGAAGGACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTATGACAAGGAGAACTGCGAGAGATTCAAGATGCAAGAAGGACCT  550

seq1  AGTCTCCACTGTTGACTGTGAAGAGGAAGGAAGGAGGTCAGGAGACAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCACTGTTGACTGTGAAGAGGAAGGAAGGAGGTCAGGAGACAGTG  600

seq1  ATGTCACTCACCTGCCTTCTAAGGCTGGGCAAGTTCACTGCACACAGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACTCACCTGCCTTCTAAGGCTGGGCAAGTTCACTGCACACAGCCA  650

seq1  GAAAGAAATCATTTTTCCCAGTGGATGAACTGAACGCTGCCAACTATTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAATCATTTTTCCCAGTGGATGAACTGAACGCTGCCAACTATTGA  700

seq1  AACGAGCAAACAAATATACATACCTTCTGAGACTCCAGAAGAGAGCCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAGCAAACAAATATACATACCTTCTGAGACTCCAGAAGAGAGCCCAG  750

seq1  CCTGTCAGCTCTTGGTTTTGCCCCTGTGAGTTCATAAGCAAAGGCTCTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCAGCTCTTGGTTTTGCCCCTGTGAGTTCATAAGCAAAGGCTCTAC  800

seq1  TGAGCCAGGGTTCAGACCTTGTTTAACACTGTGAAATTTGTCATGGAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCAGGGTTCAGACCTTGTTTAACACTGTGAAATTTGTCATGGAAAA  850

seq1  TGAATGCAGCACTCACAGCAAGTGTCTCTGTTGGGGACGTGGGGGTGTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCAGCACTCACAGCAAGTGTCTCTGTTGGGGACGTGGGGGTGTGA  900

seq1  TCTGGCTGACAAGC-TCTCTTCTTGGAAGTTCAGTATATGACCAAAGGAA  949
      |||||||||||||| ||||||||||||  |||||||||||||  ||||||
seq2  TCTGGCTGACAAGCTTCTCTTCTTGGAGTTTCAGTATATGACATAAGGAA  950

seq1  AGGAGCCCTGAAGAG-CACAGCACTGATGGTGAGCATTTGTTAAGCCTTA  998
      |||||||||| |||| | |||||||||||||||||||| |||||||||||
seq2  AGGAGCCCTGTAGAGTCCCAGCACTGATGGTGAGCATTAGTTAAGCCTTA  1000

seq1  ATCAGTGTCAGGGGCTGTGTCAGGAGCATGGCT-AATG-CACGAGACAAA  1046
      |||||||||| |||||||||||||||||||||| |||| |||||||||||
seq2  ATCAGTGTCA-GGGCTGTGTCAGGAGCATGGCTAAATGCCACGAGACAAA  1049

seq1  AGAGCTCCACCCTT-GGTTCCTTCAATT-CTCTGACTTAAGAAAACAATA  1094
      |||||| ||||||| ||||||||||||| |||||||||||| |||||  |
seq2  AGAGCTTCACCCTTGGGTTCCTTCAATTCCTCTGACTTAAGGAAACATCA  1099

seq1  GGAAAAA  1101
      |||||||
seq2  GGAAAAA  1106