BAC Information

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BAC

Clone NameB6Ng01-319O07
Chromosome1 (Build37)16 (Build37)
Map Location 20,030,236 - 20,030,72087,087,949 - 87,089,043
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040189, Tcfap2d, LOC100040413, Tcfap2b, LOC100040198, LOC226901
Downstream genePkhd1, Il17a, Il17f, Mcm3, Paqr8, Efhc1, Tram2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319O07.bB6Ng01-319O07.g
ACCGA109411GA109412
length1,0431,103
definitionB6Ng01-319O07.b B6Ng01-319O07.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(20,030,236 - 20,030,720)(87,087,949 - 87,089,043)
sequence
gaattcaatgtcctttgcttcctgtgggtgtcatgtgactcttgctaaca
tccccttcttaccacaatgctttgtattgccttgacctctaagtcaaagt
aaatattttctctttctacttacttcttgtcagatcttttgtcacagcaa
tgagataactggttaatagagtagaaatccttaaatccatcaaagcatta
aaaattaacttattattgaagatttttaggggatcagtatcctgaattta
aaatcagctgaaacaagggaaaaatagttgaataacttaagtggggctta
atgggccatgcctgtaggagtgtggaagacaatgctgctgagagcaatgt
agattatgacagctgagctcaagagatttcagatgaaaagaatattagta
attggcctaggccaattcttatgatacttagggaaagaatgtggctgctt
tctgcctttgtccaaaatatctgcctaaagctaaatcgacaccttttggt
gttgacagaggagatttcaagacaacctagtattgactgtgtcacatgat
tattaatggcaactcttatgcagatctataatgaaaaagatgaaacaata
agctgagtgaggaaaaattcaaagtgtgctgtctgaggagaaaaggggca
tgaggatgtatgatggagctaagtccagtgctcaaggagataaaaagcac
cattgcatacactagcaagattttatcgaaaggacccagatgtagctgtc
tcttgtgagactatgccggggcctagcaaacacagaagtggatgctcaca
gtcagctattggatggatcacagggctcccaatggaggagctagagaaag
tacccaaggagcttaagggatctgcaaccctataggtgggacaacattat
gaacttaccagtaccccggagctcttgactctagctgcatatgtatgaaa
gatggcctagtcgccatcactgaaagagagccattgacatgcaactttat
atgccctcagttacagggaacggcaggccaaaaaaaaagaaaa

gaattcataacaggaagtctataatggcaaaacagtaagaaaagaagaaa
aataagtttaaatgacataaaatcattactaacagtacatagaagatcta
cccctttctgaaaatctaaagaatacatttggaaagtatataaactatac
ttaccttgtttttatttttctcttttactagtgtaactaggagcatatta
tccagactcactgaaaaagagtcagaatctctgaagtggttactctacca
gtggggaattcatttattgctgagtgtaacagaaactggaataggaaacg
gctgagctatcaaattttctgtttggggaccactcagctcatgtcgttta
aactaaagttgacactttaaatgaatttattgctctcactttcttccagg
accagacagtagtccaactctcacacatggacatctttgggattatataa
ctaatccaaaagggacatattaatgtcacatttttttttcttcaatggtg
atctttccaaggccacttctttgatgtgatgtcatgttgtaatttgaagc
tgaaacttcctcttgcattacctggggaatcatgtacattttataagtaa
aatgacatttgtcaaatgatgcactgtggccttcagggtgaacaggagaa
tgaggaactcaagcttctgcagaaaacatggcggagtattcagagcaaag
tggtcaatgtaagaatgaagtcttcccaaagaattcagaaattcatggta
agattgtaaggcagagaatgaatttggcaatattaggagaaaacaccatc
agtagctcacattgaaatactttattttgttgatcaagaaatactaaatg
ttgtgctagtttctaatcagtggtgactagggtccttccacgtagtccat
tgtctgtatataaagggaaccacttgtctccgctagtgttaaaaaaagaa
aagaaaaaagaatcctcagtgaatagatgatttaatatttagtattaatc
cctagtgaccatctgaaagcttctttatgatactggttgataagataaaa
gataccccccatgtcttatagaatagtcggtcctgaagagaatttgtgga
ggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_20030236_20030720
seq2: B6Ng01-319O07.b_743_1088 (reverse)

seq1  TTTTCTTTTTTTTTGGGATTTTAATTTTTTTTATTTCTTTTTCCATTTTT  50
                                                        
seq2  --------------------------------------------------  0

seq1  TATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCC  100
                                                        
seq2  --------------------------------------------------  0

seq1  CATACCCACCCACCCCCACTCCCCTACCCACCCACTCCCCCTTTTTGGCC  150
                                         | |   ||||| | |
seq2  ---------------------------------TTTTCTTTTTTTTTGGC  17

seq1  CTGGCGTTCCCCTATACTG-GGGCATATAAAGTTTGCGTGTCCAATGGGC  199
      ||| |||||||    |||| |||||||||||| |||| ||| ||||||  
seq2  CTGCCGTTCCCTGTAACTGAGGGCATATAAAG-TTGCATGT-CAATGG--  63

seq1  CTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGC  249
      |||||||| ||||||||| ||||||||||||| ||| |||||||||||||
seq2  CTCTCTTT-CAGTGATGG-CGACTAGGCCATC-TTTCATACATATGCAGC  110

seq1  TAGAGTCAAGTGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCT  299
      |||||||||| |||||||||||||||| ||||||||||||||| ||||||
seq2  TAGAGTCAAGAGCTCCGGGGTACTGGTAAGTTCATAATGTTGTCCCACCT  160

seq1  ATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTATTTTCTCTAGCTCCTCC  349
      ||||||||||||||||||| ||||||||||||| ||||||||||||||||
seq2  ATAGGGTTGCAGATCCCTTAAGCTCCTTGGGTACTTTCTCTAGCTCCTCC  210

seq1  ATTGGGAGCCCTGTGATCCATCCATTAGCTGACTGTGAGCATCCACTTCT  399
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATTGGGAGCCCTGTGATCCATCCAATAGCTGACTGTGAGCATCCACTTCT  260

seq1  GTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGCTACATCTGGGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGCTACATCTGGGT  310

seq1  CCTTTCGATAAAATCTTGCTAGTGTATGCAATGGTG  485
      ||||||||||||||||||||||||||||||||||||
seq2  CCTTTCGATAAAATCTTGCTAGTGTATGCAATGGTG  346


seq1: chr16_87087949_87089043
seq2: B6Ng01-319O07.g_67_1169

seq1  GAATTCATAACAGGAAGTCTATAATGGCAAAACAGTAAGAAAAGAAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAACAGGAAGTCTATAATGGCAAAACAGTAAGAAAAGAAGAAA  50

seq1  AATAAGTTTAAATGACATAAAATCATTACTAACAGTACATAGAAGATCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTTTAAATGACATAAAATCATTACTAACAGTACATAGAAGATCTA  100

seq1  CCCCTTTCTGAAAATCTAAAGAATACATTTGGAAAGTATATAAACTATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTCTGAAAATCTAAAGAATACATTTGGAAAGTATATAAACTATAC  150

seq1  TTACCTTGTTTTTATTTTTCTCTTTTACTAGTGTAACTAGGAGCATATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTGTTTTTATTTTTCTCTTTTACTAGTGTAACTAGGAGCATATTA  200

seq1  TCCAGACTCACTGAAAAAGAGTCAGAATCTCTGAAGTGGTTACTCTACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACTCACTGAAAAAGAGTCAGAATCTCTGAAGTGGTTACTCTACCA  250

seq1  GTGGGGAATTCATTTATTGCTGAGTGTAACAGAAACTGGAATAGGAAACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGAATTCATTTATTGCTGAGTGTAACAGAAACTGGAATAGGAAACG  300

seq1  GCTGAGCTATCAAATTTTCTGTTTGGGGACCACTCAGCTCATGTCGTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCTATCAAATTTTCTGTTTGGGGACCACTCAGCTCATGTCGTTTA  350

seq1  AACTAAAGTTGACACTTTAAATGAATTTATTGCTCTCACTTTCTTCCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAGTTGACACTTTAAATGAATTTATTGCTCTCACTTTCTTCCAGG  400

seq1  ACCAGACAGTAGTCCAACTCTCACACATGGACATCTTTGGGATTATATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACAGTAGTCCAACTCTCACACATGGACATCTTTGGGATTATATAA  450

seq1  CTAATCCAAAAGGGACATATTAATGTCACATTTTTTTTTCTTCAATGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCCAAAAGGGACATATTAATGTCACATTTTTTTTTCTTCAATGGTG  500

seq1  ATCTTTCCAAGGCCACTTCTTTGATGTGATGTCATGTTGTAATTTGAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCCAAGGCCACTTCTTTGATGTGATGTCATGTTGTAATTTGAAGC  550

seq1  TGAAACTTCCTCTTGCATTACCTGGGGAATCATGTACATTTTATAAGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTTCCTCTTGCATTACCTGGGGAATCATGTACATTTTATAAGTAA  600

seq1  AATGACATTTGTCAAATGATGCACTGTGGCCTTCAGGGTGAACAGGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACATTTGTCAAATGATGCACTGTGGCCTTCAGGGTGAACAGGAGAA  650

seq1  TGAGGAACTCAAGCTTCTGCAGAAAACATGGCGGAGTATTCAGAGCAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAACTCAAGCTTCTGCAGAAAACATGGCGGAGTATTCAGAGCAAAG  700

seq1  TGGTCAATGTAAGAATGAAGTCTTCCCAAAGAATTCAGAAATTCATGGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAATGTAAGAATGAAGTCTTCCCAAAGAATTCAGAAATTCATGGTA  750

seq1  AGATTGTAAGGCAGAGAATGAATTTGGCAATATTAGGAGAAAACACCATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTAAGGCAGAGAATGAATTTGGCAATATTAGGAGAAAACACCATC  800

seq1  AGTAGCTCACATTGAAATACTTTATTTTGTTGATCAAGAAATACTAAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTCACATTGAAATACTTTATTTTGTTGATCAAGAAATACTAAATG  850

seq1  TTGTGCTAGTTTCTAATCAGTGGTGACTAGGGTC--TTCACGTAGTCCAT  898
      ||||||||||||||||||||||||||||||||||  | ||||||||||||
seq2  TTGTGCTAGTTTCTAATCAGTGGTGACTAGGGTCCTTCCACGTAGTCCAT  900

seq1  TGTCTGTATATAAAGG--AACACTTGTCT-CGCTAGTGTTAAAAAAAGAA  945
      ||||||||||||||||  | ||||||||| ||||||||||||||||||||
seq2  TGTCTGTATATAAAGGGAACCACTTGTCTCCGCTAGTGTTAAAAAAAGAA  950

seq1  AAG-AAAAAGA--TCTCAGTGAATAGATGATTTAATATTTAGTATTAAT-  991
      ||| |||||||   ||||||||||||||||||||||||||||||||||| 
seq2  AAGAAAAAAGAATCCTCAGTGAATAGATGATTTAATATTTAGTATTAATC  1000

seq1  CCTAGTGACCATCTGAAAGCTTCTTTATGATACTGGTTGATAAGATAAAA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTGACCATCTGAAAGCTTCTTTATGATACTGGTTGATAAGATAAAA  1050

seq1  AGAATACACACAATGTC-TATAGAATAGTC-GTCCTTGGAAGAGAATTTG  1089
         |||| | | ||||| |||||||||||| |||||  ||||||||||||
seq2  --GATACCCCCCATGTCTTATAGAATAGTCGGTCCT--GAAGAGAATTTG  1096

seq1  T-GAGGC  1095
      | |||||
seq2  TGGAGGC  1103


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