BAC Information

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BAC

Clone NameB6Ng01-320H21
Chromosome1 (Build37)
Map Location 89,062,557 - 89,227,800
singlet/doubletdoublet
Overlap gene1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600
Upstream geneArmc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1
Downstream geneLOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320H21.bB6Ng01-320H21.g
ACCGA109845GA109846
length1,1141,082
definitionB6Ng01-320H21.b B6Ng01-320H21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,226,673 - 89,227,800)(89,062,557 - 89,063,644)
sequence
gaattccaggccagccttggctacatatttttcaaggctggcgggtgatg
gcattcttttaatcccagctcttggaagacagaggcaggtggatctctga
gttcaaggttagtctggtctacagaatgatttcaggactacacagagaaa
ccctgtctcaaataaaaaatgccaaaagagagagacatatcaaactgttg
aagaaaatgggacatttaacttgcctaaaatacgtagattaattaacacc
aacataaattgtagactcaacctatgagactggcccaactatagaataaa
acagaaagtatagaaaatttaataaactaaaggagaactgaaaaaaaatc
tttttttttaaatgacacaaatcatagatctttgaggggggctagggata
aaacattttacttttctacctacagacgtcttcctagacagcaattacca
ccaatacatcttccactgtgaaggtcaacataaagatacatgtacagagt
attaaaatgcagagtcatgagaacaaataaatggtatgacatcagagtat
aatttaaaaatgtcatttcaaaaatggagcaagggaacaggctgtagata
taatgagttagaacactacctcagcaccaccataactatgtcctctagct
gcaaagctccaatcacactctgccttggaattcctatcttcacatgactt
tgaagcaagtctactattatttttcatacagtcaatctatcagcaaaata
aagctccgaaagtcaaaatactaaaatttatcaggtaagttaaaataaaa
agttattaaattgtccatttatgaatatgaaaatacgctggaaggccctc
agaaaaaagtccccagcctactaagcaacaaattaatttgaaatctagct
tataaggtaaaaaaagaaaaatagaaaacattctacacaagcaaaatgat
aaagggatctccacagaaattaggagagctcattagactaggctggactg
tatagaagtaaaaagaaactctcactaacaactgtggataacctggtata
tactgatcatttgatatactctatcacagtgctgagaacaggtcctcact
tccaatattctgaa
gaattcatcgtcatctctactatgggcatcgaaatcacatcattgctatc
ccatcaccagtgctggcaatgccaccatcaccatcaggacccacgtggta
cccagcactatctgatctcatcgaatcctcagagtaagacctccgtggtc
taatttctcaggtgaataaaccaagctttgcaacctaggagcttacttaa
agccaccaaggcaggacttgagtctgaactgcttgacccgggagtttgaa
gtcataattgctacatagaaccactgtcagtccagaggcctgggccatgg
caaagagaaaggaaaagagagggtaggatcagtgcattaggaagcagcag
agatggaggtgtgcctggtacttagttcagtttccttagcagacagtctc
ttgtcactctaataagtgcttaacagccttgctcccagccctcccctggc
tgtacttcgccagagctacatgggaggaataggtccaagaaagccagtga
gactcaagctaagggagtggagtcggctcagtggttaagagcacttgttg
ctcttccagagaactggggttcaatccttagcatttacatagtggctccc
aaccatccaacatcctcttccaatcctcgcaggtgctgggcaagcacatg
gctcacctgcattcagacaaaacattcatgcacataacattcagacacat
aaaatgctgggatttacaagcatgcactgctctgcctgtttttgtttttt
gttttgaacatgggttctagagaaaaggattccttttcagttgatttgac
aactgaatcatttcctcagtcctgaattccagtcttgtctccagtactgt
ggaggccagacagccccaagtcccacatcttgtgagccatgaccagctct
aggaggcaccaatcactagtggtggccatactgaggatgaacaccatgtc
tagtttggattgtcgtaactaacggggtgggcctgagattctcaagttgg
ggagctgaagtatattatggttcagcatctgcatgtcagttctggtgagg
acccattcctggtttgtgatggcagtctcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_89226673_89227800
seq2: B6Ng01-320H21.b_44_1157 (reverse)

seq1  TTCAGAATATTTGGAAGTGAGGAACTGTTCTCAGGCACTGGTGATTAAGG  50
      ||||||||| ||||||||||||| ||||||||| ||||| |||||    |
seq2  TTCAGAATA-TTGGAAGTGAGGACCTGTTCTCA-GCACT-GTGAT---AG  44

seq1  AGTATAATCAAATGAATCAGTATATTAACCCAGGTTATCCACAGTTGGTT  100
      ||||| |||||||| ||||||||||    ||||||||||||||||| |||
seq2  AGTAT-ATCAAATG-ATCAGTATAT---ACCAGGTTATCCACAGTT-GTT  88

seq1  AGTGAAGAGTTTC-TTTTACTTCTATACAGTCCAGCCTAGTTCTAATGGG  149
      |||| |||||||| |||||||||||||||||||||||||| ||||||| |
seq2  AGTG-AGAGTTTCTTTTTACTTCTATACAGTCCAGCCTAG-TCTAATGAG  136

seq1  CTCTCCTAATTTCTGTGGAGATCCCTTTTATCATTTTGCTTGTGTAGAAT  199
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTCTCCTAATTTCTGTGGAGATCCC-TTTATCATTTTGCTTGTGTAGAAT  185

seq1  GTTTTCTATTTTTCTTTTTTTACCTTATAAGCTAGATTTCAAATTAATTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTATTTTTCTTTTTTTACCTTATAAGCTAGATTTCAAATTAATTT  235

seq1  GTTGCTTAGTAGGCTGGGGACTTTTTTCTGAGGGCCTTCCAGCGTATTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTAGTAGGCTGGGGACTTTTTTCTGAGGGCCTTCCAGCGTATTTT  285

seq1  CATATTCATAAATGGACAATTTAATAACTTTTTATTTTAACTTACCTGAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTCATAAATGGACAATTTAATAACTTTTTATTTTAACTTACCTGAT  335

seq1  AAATTTTAGTATTTTGACTTTCGGAGCTTTATTTTGCTGATAGATTGACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTAGTATTTTGACTTTCGGAGCTTTATTTTGCTGATAGATTGACT  385

seq1  GTATGAAAAATAATAGTAGACTTGCTTCAAAGTCATGTGAAGATAGGAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAAAAATAATAGTAGACTTGCTTCAAAGTCATGTGAAGATAGGAAT  435

seq1  TCCAAGGCAGAGTGTGATTGGAGCTTTGCAGCTAGAGGACATAGTTATGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGCAGAGTGTGATTGGAGCTTTGCAGCTAGAGGACATAGTTATGG  485

seq1  TGGTGCTGAGGTAGTGTTCTAACTCATTATATCTACAGCCTGTTCCCTTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTGAGGTAGTGTTCTAACTCATTATATCTACAGCCTGTTCCCTTG  535

seq1  CTCCATTTTTGAAATGACATTTTTAAATTATACTCTGATGTCATACCATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTTTTGAAATGACATTTTTAAATTATACTCTGATGTCATACCATT  585

seq1  TATTTGTTCTCATGACTCTGCATTTTAATACTCTGTACATGTATCTTTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTTCTCATGACTCTGCATTTTAATACTCTGTACATGTATCTTTAT  635

seq1  GTTGACCTTCACAGTGGAAGATGTATTGGTGGTAATTGCTGTCTAGGAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACCTTCACAGTGGAAGATGTATTGGTGGTAATTGCTGTCTAGGAAG  685

seq1  ACGTCTGTAGGTAGAAAAGTAAAATGTTTTATCCCTAGCCCCCCTCAAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCTGTAGGTAGAAAAGTAAAATGTTTTATCCCTAGCCCCCCTCAAAG  735

seq1  ATCTATGATTTGTGTCATTTAAAAAAAAAGATTTTTTTTCAGTTCTCCTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATGATTTGTGTCATTTAAAAAAAAAGATTTTTTTTCAGTTCTCCTT  785

seq1  TAGTTTATTAAATTTTCTATACTTTCTGTTTTATTCTATAGTTGGGCCAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTATTAAATTTTCTATACTTTCTGTTTTATTCTATAGTTGGGCCAG  835

seq1  TCTCATAGGTTGAGTCTACAATTTATGTTGGTGTTAATTAATCTACGTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATAGGTTGAGTCTACAATTTATGTTGGTGTTAATTAATCTACGTAT  885

seq1  TTTAGGCAAGTTAAATGTCCCATTTTCTTCAACAGTTTGATATGTCTCTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGCAAGTTAAATGTCCCATTTTCTTCAACAGTTTGATATGTCTCTC  935

seq1  TCTTTTGGCATTTTTTATTTGAGACAGGGTTTCTCTGTGTAGTCCTGAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGGCATTTTTTATTTGAGACAGGGTTTCTCTGTGTAGTCCTGAAA  985

seq1  TCATTCTGTAGACCAGACTAACCTTGAACTCAGAGATCCACCTGCCTCTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTGTAGACCAGACTAACCTTGAACTCAGAGATCCACCTGCCTCTG  1035

seq1  TCTTCCAAGAGCTGGGATTAAAAGAATGCCATCACCCGCCAGCCTTGAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAAGAGCTGGGATTAAAAGAATGCCATCACCCGCCAGCCTTGAAA  1085

seq1  AATATGTAGCCAAGGCTGGCCTGGAATTC  1128
      |||||||||||||||||||||||||||||
seq2  AATATGTAGCCAAGGCTGGCCTGGAATTC  1114

seq1: chr1_89062557_89063644
seq2: B6Ng01-320H21.g_67_1148

seq1  GAATTCATCGTCATCTCTACTATGGGCATCGAAATCACATCATTGCTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCGTCATCTCTACTATGGGCATCGAAATCACATCATTGCTATC  50

seq1  CCATCACCAGTGCTGGCAATGCCACCATCACCATCAGGACCCACGTGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCACCAGTGCTGGCAATGCCACCATCACCATCAGGACCCACGTGGTA  100

seq1  CCCAGCACTATCTGATCTCATCGAATCCTCAGAGTAAGACCTCCGTGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACTATCTGATCTCATCGAATCCTCAGAGTAAGACCTCCGTGGTC  150

seq1  TAATTTCTCAGGTGAATAAACCAAGCTTTGCAACCTAGGAGCTTACTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCTCAGGTGAATAAACCAAGCTTTGCAACCTAGGAGCTTACTTAA  200

seq1  AGCCACCAAGGCAGGACTTGAGTCTGAACTGCTTGACCCGGGAGTTTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCAAGGCAGGACTTGAGTCTGAACTGCTTGACCCGGGAGTTTGAA  250

seq1  GTCATAATTGCTACATAGAACCACTGTCAGTCCAGAGGCCTGGGCCATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAATTGCTACATAGAACCACTGTCAGTCCAGAGGCCTGGGCCATGG  300

seq1  CAAAGAGAAAGGAAAAGAGAGGGTAGGATCAGTGCATTAGGAAGCAGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGAAAGGAAAAGAGAGGGTAGGATCAGTGCATTAGGAAGCAGCAG  350

seq1  AGATGGAGGTGTGCCTGGTACTTAGTTCAGTTTCCTTAGCAGACAGTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGAGGTGTGCCTGGTACTTAGTTCAGTTTCCTTAGCAGACAGTCTC  400

seq1  TTGTCACTCTAATAAGTGCTTAACAGCCTTGCTCCCAGCCCTCCCCTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACTCTAATAAGTGCTTAACAGCCTTGCTCCCAGCCCTCCCCTGGC  450

seq1  TGTACTTCGCCAGAGCTACATGGGAGGAATAGGTCCAAGAAAGCCAGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTCGCCAGAGCTACATGGGAGGAATAGGTCCAAGAAAGCCAGTGA  500

seq1  GACTCAAGCTAAGGGAGTGGAGTCGGCTCAGTGGTTAAGAGCACTTGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAAGCTAAGGGAGTGGAGTCGGCTCAGTGGTTAAGAGCACTTGTTG  550

seq1  CTCTTCCAGAGAACTGGGGTTCAATCCTTAGCATTTACATAGTGGCTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCAGAGAACTGGGGTTCAATCCTTAGCATTTACATAGTGGCTCCC  600

seq1  AACCATCCAACATCCTCTTCCAATCCTCGCAGGTGCTGGGCAAGCACATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCCAACATCCTCTTCCAATCCTCGCAGGTGCTGGGCAAGCACATG  650

seq1  GCTCACCTGCATTCAGACAAAACATTCATGCACATAACATTCAGACACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACCTGCATTCAGACAAAACATTCATGCACATAACATTCAGACACAT  700

seq1  AAAATGCTGGGATTTACAAGCATGCACTGCTCTGCCTGTTTTTGTTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCTGGGATTTACAAGCATGCACTGCTCTGCCTGTTTTTGTTTTTT  750

seq1  GTTTTGAACATGGGTTCTAGAGAAAAGGATTCCTTTTCAGTTGATTTGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAACATGGGTTCTAGAGAAAAGGATTCCTTTTCAGTTGATTTGAC  800

seq1  AACTGAATCATTTCCTCAGTCCTGAATTCCAGTCTTGTCTCCAGTACTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAATCATTTCCTCAGTCCTGAATTCCAGTCTTGTCTCCAGTACTGT  850

seq1  GGAGGCCAGACAGCCCCAAGTCCCACATCTTGTGAGCCATGACCAGCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCAGACAGCCCCAAGTCCCACATCTTGTGAGCCATGACCAGCTCT  900

seq1  AGGAGGCACCAATCACTAGTGGTGGCCATACTGAGGATGAACACCATGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCACCAATCACTAGTGGTGGCCATACTGAGGATGAACACCATGTC  950

seq1  TAGTTGGGATTGTCGTAACTAACGGGGTGGGCCTGAGATTCTCAAGTTTG  1000
      ||||| |||||||||||||||||||||||||||||||||||||||||| |
seq2  TAGTTTGGATTGTCGTAACTAACGGGGTGGGCCTGAGATTCTCAAGTTGG  1000

seq1  GGAGGCTGGAAGTATA-TATGGGTCAGGGATCTGGCATGGTCAGGTTCTG  1049
      ||| ||| |||||||| ||||| ||| | |||| |||| |||| ||||||
seq2  GGA-GCT-GAAGTATATTATGGTTCA-GCATCT-GCAT-GTCA-GTTCTG  1044

seq1  GTGAGGACCCATTCCT-GTTTGTGGATGGCAGTCTTCCTG  1088
      |||||||||||||||| |||||| |||||||||| |||||
seq2  GTGAGGACCCATTCCTGGTTTGT-GATGGCAGTC-TCCTG  1082