BAC Information

Click to search

BAC

Clone NameB6Ng01-320I01
Chromosome1 (Build37)
Map Location 36,441,598 - 36,593,035
singlet/doubletdoublet
Overlap gene4930533C12Rik, Lman2l, Cnnm4, Cnnm3, Ankrd23
Upstream geneLOC100041544, LOC666283, LOC100041091, EG666290, Hs6st1, Ugcgl1, LOC100041123, Lincr, Arid5a, 4632411B12Rik
Downstream geneAnkrd39, Sema4c, 1700024G10Rik, BC050210, EG623414, Cox5b, Actr1b, 4933424G06Rik, Zap70, Tmem131, EG241053, A230074B11Rik, 4921511C04Rik, Cnga3, Inpp4a, 6330578E17Rik, Unc50, Mgat4a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320I01.bB6Ng01-320I01.g
ACCGA109853GA109854
length824847
definitionB6Ng01-320I01.b B6Ng01-320I01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,592,213 - 36,593,035)(36,441,598 - 36,442,439)
sequence
gaattcacaaggcattaggtcagcctcttatgtcattgctcctgaggtcc
tctgtaggttgcctgctttgtgctgggctgactgcactgggcactctgca
gcatctcaggcagccagatctatactgtgagcctgggcttctcaccagtg
ggttctaaactgaagagtaagagacgtttcccttgagtctggcccaggca
tcccagaccatggggtggtaaaatggctccctggtagatgtgggtgcagc
aggtgcagggtagtgggtgtccaagggaggagactgccaactcagcacca
gacagctccttttcccgcccccagtgggccacattcccagaacggtattt
tggtcagtgtgacagggccccagagtcatctggcctgggcacaagctttg
tcctttccctcccccaagagagtgctctcccataaaagagctgagctcaa
ttcgctaggtgcatggagagcaaggggggaccatggacttcatcagcatt
gagcagttggtaaggatgtgaggaggatgggtgaccgctgaagattcagg
acaaggcgcagggacccagagcatgtggccagagtagcgaagtctggctg
agtgagggtaggctttctgggatctgagggtcaggtctcatgtgagggga
aggagctgcgagaggatgggggaactcgagttactgagtctgtttggttt
tggtgaatgtggttctgggggtccatcttggggcttcacacatgtgaggg
tagcaccctaccaaagagctgcaccctcaaacttgtaggtttgcccttgt
tggatggtgggaagagaaatggtg
gaattctactgtgatccggccatcacatacattccaggttgacactggat
ctgggggtggagagatgtttgcctccgtatgtctggcatcaggccagggt
ggaaagaggactctcctttcccagaggtactagcagccttgttagcgtac
catccttgtgtagtagaggggacttctgtccttctctaccactgggtgag
agctggtgcatgtgagacaccacttgccctgttttccctggaaacaaagg
ctatttcaggagagagagagaggtggggagagagagagagacaaacagac
tggagggtctcacattggctctgcctccccaggtcacacactcctgagga
aatggttaggcctctgtcagcgaaataagaccaccagtggagtcagaggc
tacttgaaagtcaccatctgtgccctcggtgtaggggatcaggcgctggt
gaggctgccaccttcttctcaatccccagtaatatagcttatgtggctgc
ctccctggggacctctgagccttccaagtggccattggcctataccacct
ttgttcggtgtgccataaagggttgtccgctctccctgcatcacatggaa
agtcgggaaagtcaatagtgggtgaacttggctgagccctccctgcctct
gagcctgaccctgtccacttctctggcatctgcaggtagatcaaaagctg
ccctatgagcaaaacacccgggtccagatcttcaagtcaaaagaagttcc
agtcagtctggcttacttgcagttcttcatctaactgtgcagaggatctc
cattttcggttagagcctgtgggaagggaggagggaggggggaaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_36592213_36593035
seq2: B6Ng01-320I01.b_47_870 (reverse)

seq1  CACCATTTCTCTT-CCACCATCCAACAAGGGCAAACCTACAAGTTTGAGG  49
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CACCATTTCTCTTCCCACCATCCAACAAGGGCAAACCTACAAGTTTGAGG  50

seq1  GTGCAGCTCTTTGGTAGGGTGCTACCCTCACATGTGTGAAGCCCCAAGAT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGCTCTTTGGTAGGGTGCTACCCTCACATGTGTGAAGCCCCAAGAT  100

seq1  GGACCCCCAGAACCACATTCACCAAAACCAAACAGACTCAGTAACTCGAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCCCAGAACCACATTCACCAAAACCAAACAGACTCAGTAACTCGAG  150

seq1  TTCCCCCATCCTCTCGCAGCTCCTTCCCCTCACATGAGACCTGACCCTCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCATCCTCTCGCAGCTCCTTCCCCTCACATGAGACCTGACCCTCA  200

seq1  GATCCCAGAAAGCCTACCCTCACTCAGCCAGACTTCGCTACTCTGGCCAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCAGAAAGCCTACCCTCACTCAGCCAGACTTCGCTACTCTGGCCAC  250

seq1  ATGCTCTGGGTCCCTGCGCCTTGTCCTGAATCTTCAGCGGTCACCCATCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTGGGTCCCTGCGCCTTGTCCTGAATCTTCAGCGGTCACCCATCC  300

seq1  TCCTCACATCCTTACCAACTGCTCAATGCTGATGAAGTCCATGGTCCCCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACATCCTTACCAACTGCTCAATGCTGATGAAGTCCATGGTCCCCC  350

seq1  CTTGCTCTCCATGCACCTAGCGAATTGAGCTCAGCTCTTTTATGGGAGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCTCCATGCACCTAGCGAATTGAGCTCAGCTCTTTTATGGGAGAG  400

seq1  CACTCTCTTGGGGGAGGGAAAGGACAAAGCTTGTGCCCAGGCCAGATGAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCTTGGGGGAGGGAAAGGACAAAGCTTGTGCCCAGGCCAGATGAC  450

seq1  TCTGGGGCCCTGTCACACTGACCAAAATACCGTTCTGGGAATGTGGCCCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGCCCTGTCACACTGACCAAAATACCGTTCTGGGAATGTGGCCCA  500

seq1  CTGGGGGCGGGAAAAGGAGCTGTCTGGTGCTGAGTTGGCAGTCTCCTCCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGCGGGAAAAGGAGCTGTCTGGTGCTGAGTTGGCAGTCTCCTCCC  550

seq1  TTGGACACCCACTACCCTGCACCTGCTGCACCCACATCTACCAGGGAGCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACACCCACTACCCTGCACCTGCTGCACCCACATCTACCAGGGAGCC  600

seq1  ATTTTACCACCCCATGGTCTGGGATGCCTGGGCCAGACTCAAGGGAAACG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACCACCCCATGGTCTGGGATGCCTGGGCCAGACTCAAGGGAAACG  650

seq1  TCTCTTACTCTTCAGTTTAGAACCCACTGGTGAGAAGCCCAGGCTCACAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTACTCTTCAGTTTAGAACCCACTGGTGAGAAGCCCAGGCTCACAG  700

seq1  TATAGATCTGGCTGCCTGAGATGCTGCAGAGTGCCCAGTGCAGTCAGCCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATCTGGCTGCCTGAGATGCTGCAGAGTGCCCAGTGCAGTCAGCCC  750

seq1  AGCACAAAGCAGGCAACCTACAGAGGACCTCAGGAGCAATGACATAAGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAAAGCAGGCAACCTACAGAGGACCTCAGGAGCAATGACATAAGAG  800

seq1  GCTGACCTAATGCCTTGTGAATTC  823
      ||||||||||||||||||||||||
seq2  GCTGACCTAATGCCTTGTGAATTC  824

seq1: chr1_36441598_36442439
seq2: B6Ng01-320I01.g_67_913

seq1  GAATTCTACTGTGATCCGGCCATCACATACATTCCAGGTTGACACTGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACTGTGATCCGGCCATCACATACATTCCAGGTTGACACTGGAT  50

seq1  CTGGGGGTGGAGAGATGTTTGCCTCCGTATGTCTGGCATCAGGCCAGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGTGGAGAGATGTTTGCCTCCGTATGTCTGGCATCAGGCCAGGGT  100

seq1  GGAAAGAGGACTCTCCTTTCCCAGAGGTACTAGCAGCCTTGTTAGCGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAGGACTCTCCTTTCCCAGAGGTACTAGCAGCCTTGTTAGCGTAC  150

seq1  CATCCTTGTGTAGTAGAGGGGACTTCTGTCCTTCTCTACCACTGGGTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTGTGTAGTAGAGGGGACTTCTGTCCTTCTCTACCACTGGGTGAG  200

seq1  AGCTGGTGCATGTGAGACACCACTTGCCCTGTTTTCCCTGGAAACAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGTGCATGTGAGACACCACTTGCCCTGTTTTCCCTGGAAACAAAGG  250

seq1  CTATTTCAGGAGAGAGAGAGAGGTGGGGAGAGAGAGAGAGACAAACAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCAGGAGAGAGAGAGAGGTGGGGAGAGAGAGAGAGACAAACAGAC  300

seq1  TGGAGGGTCTCACATTGGCTCTGCCTCCCCAGGTCACACACTCCTGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGGTCTCACATTGGCTCTGCCTCCCCAGGTCACACACTCCTGAGGA  350

seq1  AATGGTTAGGCCTCTGTCAGCGAAATAAGACCACCAGTGGAGTCAGAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTTAGGCCTCTGTCAGCGAAATAAGACCACCAGTGGAGTCAGAGGC  400

seq1  TACTTGAAAGTCACCATCTGTGCCCTCGGTGTAGGGGATCAGGCGCTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGAAAGTCACCATCTGTGCCCTCGGTGTAGGGGATCAGGCGCTGGT  450

seq1  GAGGCTGCCACCTTCTTCTCAATCCCCAGTAATATAGCTTATGTGGCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGCCACCTTCTTCTCAATCCCCAGTAATATAGCTTATGTGGCTGC  500

seq1  CTCCCTGGGGACCTCTGAGCCTTCCAAGTGGCCATTGGCCTATACCACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGGGGACCTCTGAGCCTTCCAAGTGGCCATTGGCCTATACCACCT  550

seq1  TTGTTCGGTGTGCCATAAAGGGTTGTCCGCTCTCCCTGCATCACATGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCGGTGTGCCATAAAGGGTTGTCCGCTCTCCCTGCATCACATGGAA  600

seq1  AGTCGGGAAAGTCAATAGTGGGTGAACTTGGCTGAGCCCTCCCTGCCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGGGAAAGTCAATAGTGGGTGAACTTGGCTGAGCCCTCCCTGCCTCT  650

seq1  GAGCCTGACCCTGTCCACTTCTCTGGCATCTGCAGGTAGATCAAAAGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGACCCTGTCCACTTCTCTGGCATCTGCAGGTAGATCAAAAGCTG  700

seq1  CCCTATGAGCAAAACACCCGGGTCCAGATCTTCAAGTCAAAAGAAGTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATGAGCAAAACACCCGGGTCCAGATCTTCAAGTCAAAAGAAGTTCC  750

seq1  AGTCAGTCTGGCTTACTTGCAGTTCTTCATCT-ACTGTGCAGAGGATCTC  799
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGTCAGTCTGGCTTACTTGCAGTTCTTCATCTAACTGTGCAGAGGATCTC  800

seq1  CA-TTTCGGTTAGAGCCTGTGGGAAGGGA-GAGG--AGGGGGAAACT  842
      || |||||||||||||||||||||||||| ||||   ||||||||||
seq2  CATTTTCGGTTAGAGCCTGTGGGAAGGGAGGAGGGAGGGGGGAAACT  847