BAC Information

Click to search

BAC

Clone NameB6Ng01-324C04
Chromosome1 (Build37)
Map Location 87,469,845 - 87,470,990
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040213, LOC100039794, EG665338
Downstream geneSp110, Sp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324C04.bB6Ng01-324C04.g
ACCGA112530GA112531
length1,1341,196
definitionB6Ng01-324C04.b B6Ng01-324C04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatccgttgcatgtggaggaggagaaggacctgggaaggaaagt
ggtccagcagtcaggtgatacagcaaaccaccaagactgatgcagaagga
ccgacttctcctgaaggcagaaatggccctgggcacagaacggttggcct
tgtcaccttggctacttcccttctccaactcactcacccagcccagtcct
caagcatgtctcatggctgtccctcagatggccacaagaaggtaggaatt
ccttctgaacaggtgtcctagtgcaactctctaaacatacccagtctata
taagaaattaaagccctagaatgctgcccaagactgtagagcacttacct
accactagagagcactgtgggtccctcttgacactggaagctaaaaggaa
ctagtgaggccttttaagggaacaggaatcctctcgatggctgtcatcaa
acacaagttatatgagagtcaagcaagaacagaagtaagtctatcagaga
actaagagtggcaaagaacaacaagccaaacgctcttgcttaggcacgtg
tgctggagggctctttatgcgagcaaaaggtctcttagctgttggccaca
cgtttcaagcctcccgaccagtgtaatgaagtggctgagatgtgctctct
gttgtgagctggaagagacctgtgtggcctcatttcttatttaaccaggt
tgggtctggtagcaggcccaggttaagtgtcccactgctggctcagacat
gtctgctggaccttcccatctccaaaaatgcttcagtttacttggagaag
ctcagaaacaaggattccaggaggaaccacaaattacagggggcttttgg
aactgatagagaaattttgattgtacagtgtttcagactgaatctgacat
ttttttagataggttctcactatgtagcccaggctgggcctggaggtcct
gaaatccacctccctctgcctctccactgctgggaatgaagtgtgtgcta
ccattcattcccagcctgagaagtctgctttttagctactaatattcact
gtgtgctggatgctatacaacacttgcctagcaatcaatctgtcatgatt
atattttttgaatgaggggaccacacacaatacc
gaattcatttgccatgttttgttttattttgttttttaagaatttgctgt
acttttattagaatcaagttgctacagtcataaaatgctgactcatggga
taaccaaaaaagaacctcaagaaaatgactggattgatatgcaaatgaaa
gactgtgctttgatctgcaagagctaagcaacctggatgagctgtctgga
gagaaaacagagttcttttagaatgtttttctagcagctacccagagaga
actgcttggagagcaaatacaggtcttttacaatctttttcctgcaagag
agcaaaagagagctgtctcaggcagaggaaactgtctcatgcagaaagct
gtcttgagcataaagctatcttgagcatactacagatccaagagctatct
acagagagctgtctagggagccatcttgagcagattacaaggctaatcag
cttgtacccatgatttgacttttagtcatttttttggttggtggtgaaca
ctctccttcctcagaaccctctccaagctgaggttgatccttagcagaac
tcaagaagttagataccaataatccaaataacccaattaaaaaatgaggt
acagagctaaatagagaattttcaaaaaaggaatcttgaatggctgaaaa
acacctaaagaaatgttcaacatccttagtcatcagggaaatgcaaatca
aaacaactctgagattccaccttacacctatcagaatggctaagatcaaa
aactcaaagaacaacacatgctgacaaggttgtggagcaagagaaatact
cctacactgctgggggaggacaaacttgtacaaccactctggaagtcaac
ttggcagttgctcagaaaattgggaatagttctacctcaagacccagcta
taccacacctgagcatgtacccagaagatgtgccaccatcccacaaggac
atttgctcaactatgctcagcagttttattcataataaacagaaaactgg
gaaacaacccagattccctcaactaaagaatggagaacagaaaatgtggc
tcattacacgtggactactactcaccatttaaacaagaatatcagaaatt
tcctcaccgcaatggaatagaacctttaaatatcatctaaggtgaggtca
cccggaaccccaaaggacatgcataataaatggtactcctcaccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_87469845_87470990
seq2: B6Ng01-324C04.b_45_1178 (reverse)

seq1  GGTA-TGTGTGTGTCCCCCTTTAATCAAAAAATATTATCCATGACAGATG  49
      |||| ||||||||  |||| | | ||||||||||| || |||||||||| 
seq2  GGTATTGTGTGTGGTCCCC-TCATTCAAAAAATATAAT-CATGACAGATT  48

seq1  AATGGCTAAGCAAAGTGTTGTATAAGCATACAGCACACAGTGGAATATTA  99
       || |||| || ||||||||||| ||||| ||||||||||| ||||||| 
seq2  GATTGCTAGGC-AAGTGTTGTAT-AGCATCCAGCACACAGT-GAATATT-  94

seq1  AGTAGCCTTAAAAAGCAAGGAACTTCTCAGGCTGGGAATGAATGGTAGCA  149
      ||||||  |||||||||    |||||||||||||||||||||||||||||
seq2  AGTAGC--TAAAAAGCA---GACTTCTCAGGCTGGGAATGAATGGTAGCA  139

seq1  CACACCTTCATTCCCAGCAGTGGAGAGGCAGAGGGAGGTGGATTTCAGGG  199
      |||| |||||||||||||||||||||||||||||||||||||||||| ||
seq2  CACA-CTTCATTCCCAGCAGTGGAGAGGCAGAGGGAGGTGGATTTCA-GG  187

seq1  ACCTCCAGG-CCAGCCTGGGCTACATAGTGAGAACCTATCTTAAAAAATG  248
      ||||||||| ||||||||||||||||||||||||||||||| ||||||||
seq2  ACCTCCAGGCCCAGCCTGGGCTACATAGTGAGAACCTATCTAAAAAAATG  237

seq1  TCAGATTCAGTCCTGAAACACTGTACAATCAAAATTTCTCTATCAGTTCC  298
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTCAGT-CTGAAACACTGTACAATCAAAATTTCTCTATCAGTTCC  286

seq1  AAAAGCCCCCTGTAATTTGTGGTTCCTCCTGGAATCCTTGTTCTTGAGCT  348
      ||||||||||||||||||||||||||||||||||||||||||  ||||||
seq2  AAAAGCCCCCTGTAATTTGTGGTTCCTCCTGGAATCCTTGTTTCTGAGCT  336

seq1  TCTCCAAGTAAACTGAAGCATTTTTGGAGATGGGAAGGTCCAGCAGACAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAAGTAAACTGAAGCATTTTTGGAGATGGGAAGGTCCAGCAGACAT  386

seq1  GTCTGAGCCAGCAGTGGGACACTTAACCTGGGCCTGCTACCAGACCCAAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGCCAGCAGTGGGACACTTAACCTGGGCCTGCTACCAGACCCAAC  436

seq1  CTGGTTAAATAAGAAATGAGGCCACACAGGTCTCTTCCAGCTCACAACAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTGGTTAAATAAGAAATGAGGCCACACAGGTCTCTTCCAGCTCACAACAG  486

seq1  AGAGCACATCTCAGCCACTTCATTACACTGGCTGGGAGGCTTGAAACGTG  548
      |||||||||||||||||||||||||||||||  |||||||||||||||||
seq2  AGAGCACATCTCAGCCACTTCATTACACTGGTCGGGAGGCTTGAAACGTG  536

seq1  TGGCCAACAGCTAAGAGACCTTTTGCCCGCATAAAGAGCCCTCCAACACA  598
      |||||||||||||||||||||||||| |||||||||||||||||| ||||
seq2  TGGCCAACAGCTAAGAGACCTTTTGCTCGCATAAAGAGCCCTCCAGCACA  586

seq1  CGTGCCTAAGCAAGAGCGTTTGGCTTGTTGTTCTTTGCCACTCTTAGTTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCCTAAGCAAGAGCGTTTGGCTTGTTGTTCTTTGCCACTCTTAGTTC  636

seq1  TCTGATAGACTTACTTCTGTTCTTGCTTGACTCTCATGTTACTTGTGTTT  698
      ||||||||||||||||||||||||||||||||||||| | ||||||||||
seq2  TCTGATAGACTTACTTCTGTTCTTGCTTGACTCTCATATAACTTGTGTTT  686

seq1  GATGACAGCCATCTAGAGGATTCCTGTTCCCTTAAAAGGCCTCACTAGTT  748
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GATGACAGCCATCGAGAGGATTCCTGTTCCCTTAAAAGGCCTCACTAGTT  736

seq1  CCTTTTAGCTTCCAGTGTCAAGAGGGACCCACAGTGCTCTCTAGTGGTAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTAGCTTCCAGTGTCAAGAGGGACCCACAGTGCTCTCTAGTGGTAG  786

seq1  GTAAGTGCTCTACAGTCTTGGGCAGCATTCTAGGGCTTTAACTTCTTATA  848
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTAAGTGCTCTACAGTCTTGGGCAGCATTCTAGGGCTTTAATTTCTTATA  836

seq1  TAGACTGGGTATGTTTAGAGAGTTGCACTAGGACACCTGTTCAGAAGGAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTGGGTATGTTTAGAGAGTTGCACTAGGACACCTGTTCAGAAGGAA  886

seq1  TTCCTACCTTCTTGTGGCCATCTGAGGGACAGCCATGAGACATGCTTGAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACCTTCTTGTGGCCATCTGAGGGACAGCCATGAGACATGCTTGAG  936

seq1  GACTGGGCTGGGTGAGTGAGTTGGAGAAGGGAAGTAGCCAAGGTGACAAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGGCTGGGTGAGTGAGTTGGAGAAGGGAAGTAGCCAAGGTGACAAG  986

seq1  GCCAACCGTTCTGTGCCCAGGGCCATTTCTGCCTTCAGGAGAAGTCGGTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACCGTTCTGTGCCCAGGGCCATTTCTGCCTTCAGGAGAAGTCGGTC  1036

seq1  CTTCTGCATCAGTCTTGGTGGTTTGCTGTATCACCTGACTGCTGGACCAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCATCAGTCTTGGTGGTTTGCTGTATCACCTGACTGCTGGACCAC  1086

seq1  TTTCCTTCCCAGGTCCTTCTCCCCCTCCACATGCAACGGATGGAATTC  1146
      |||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTTCCTTCCCAGGTCCTTCTCCTCCTCCACATGCAACGGATGGAATTC  1134