BAC Information

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BAC

Clone NameB6Ng01-324E12
Chromosome1 (Build37)
Map Location 59,156,021 - 59,298,178
singlet/doubletdoublet
Overlap geneAls2cr4, Mpp4, Als2
Upstream geneAox1, Aox3, Aox4, Aox3l1, EG628262, Bzw1, Clk1, Ppil3, Nif3l1, Orc2l, BC049806, Ndufb3, EG667397, Als2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11
Downstream geneAls2cr7, Fzd7, Gm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496, Ica1l, Wdr12, Carf, Nbeal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324E12.bB6Ng01-324E12.g
ACCGA112638GA112639
length1,080631
definitionB6Ng01-324E12.b B6Ng01-324E12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,156,021 - 59,157,101)(59,297,546 - 59,298,178)
sequence
gaattctatgtctgttgtataagagtctgttcacagcctttcaggtcact
aaaggcccctccacctttctaagcagaaatatcacaactgaccaacagct
ctttggtggaactgaaaagggtttagtcctttagaaaacatcccctggct
atgctgagccacgcgcaatgaaggatactttccccatttcaaagctcgta
tccctactcacatctgcaaagccacttttgctgtgaaaagtcctcatgga
ctccaggaatgagaggggccatgacttagccagcaacacccccaccctga
cagcacctttccccactccttgatgacatattcagatatgacaggcctca
gctcaacatctctgcagttgctgcgaagcagacgatgaagtacactccca
gctgctgccgacatggggatcactgctaatcagtgaggactcacactggc
aggaacgccagaagtgcatgtagttacaattctacaacacaagtgaatac
ccattcggcgacgctggcttgacagatcgtaaagggtatttctagcatgc
tgctggcatagaccaaatcctcaagaacagccacctcaattgccaaactg
tcactcatcttctatacatcattcagttgtgtgctgatctgggaggccca
gtagtttcagggatgtgtccaacagcctttgagtcaccttctcttctagc
aggtcttcacactgacttaagctgttggggctcacagacaccagctgaag
aaccatttgaaatgtgttaagacagcttttttccatgcagaacccagccc
aagagtggaatttcccagaaacctagagttatctgacagagagtgtgcaa
atgaaggtgaccttccactcacgtttcctgtgactcccgagaagaacccc
tcaatctcagcattcaagaggctggggaaaggaagatcgggaaaggagtt
taaagtcagtctgggactacagcccaaccccctttcctcagcaaactagc
agaaaacagaagactaaagagtgctcagtggtagagccttgctcctagac
taaaacccaggtttgaaatcgatcatatca
gaattcaaagccaatcttggttccactatttgaggccaccctgggctata
tgaggcccagtcttagagaaccaaaaactaaagcaaaccaaaaccaacca
acagatcctcctcaaaagaaaggttttaaaaaagcacatgattaagtcaa
agaatgggcagtcagttctttggacactcctgttccatgtcctcctctca
ggggtagccatatttttggcaaggttaatttttatttatgtgtatgtgta
tgtgtgtatcactgggtatgagcgccatgtgtgtgaagacctctgtgaag
gccagaagtgagaggcagctgggagttgttccatgtgggtgcttgtaacg
aaacttgggtcctctggaagagcagtgagcacgcctaacttctgagcatc
tctagccctactgtcctctttgtaatagttttaactattgtatgtatgca
gtgtgttttgattgtattcactcccacttctctcctgctccccttgtgct
gcctcccaactgcatgttctctctctctctctctctctctctctctctct
ctctctctctctctttctcctctctctccccaatggagcccaactaatgc
tgctgctctcatgggtatggatgtgaggcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_59156021_59157101
seq2: B6Ng01-324E12.b_44_1123

seq1  GAATTCTATGTCTGTTGTATAAGAGTCTGTTCACAGCCTTTCAGGTCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGTCTGTTGTATAAGAGTCTGTTCACAGCCTTTCAGGTCACT  50

seq1  AAAGGCCCCTCCACCTTTCTAAGCAGAAATATCACAACTGACCAACAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCCCTCCACCTTTCTAAGCAGAAATATCACAACTGACCAACAGCT  100

seq1  CTTTGGTGGAACTGAAAAGGGTTTAGTCCTTTAGAAAACATCCCCTGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTGGAACTGAAAAGGGTTTAGTCCTTTAGAAAACATCCCCTGGCT  150

seq1  ATGCTGAGCCACGCGCAATGAAGGATACTTTCCCCATTTCAAAGCTCGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGAGCCACGCGCAATGAAGGATACTTTCCCCATTTCAAAGCTCGTA  200

seq1  TCCCTACTCACATCTGCAAAGCCACTTTTGCTGTGAAAAGTCCTCATGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTACTCACATCTGCAAAGCCACTTTTGCTGTGAAAAGTCCTCATGGA  250

seq1  CTCCAGGAATGAGAGGGGCCATGACTTAGCCAGCAACACCCCCACCCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGAATGAGAGGGGCCATGACTTAGCCAGCAACACCCCCACCCTGA  300

seq1  CAGCACCTTTCCCCACTCCTTGATGACATATTCAGATATGACAGGCCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCTTTCCCCACTCCTTGATGACATATTCAGATATGACAGGCCTCA  350

seq1  GCTCAACATCTCTGCAGTTGCTGCGAAGCAGACGATGAAGTACACTCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAACATCTCTGCAGTTGCTGCGAAGCAGACGATGAAGTACACTCCCA  400

seq1  GCTGCTGCCGACATGGGGATCACTGCTAATCAGTGAGGACTCACACTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGCCGACATGGGGATCACTGCTAATCAGTGAGGACTCACACTGGC  450

seq1  AGGAACGCCAGAAGTGCATGTAGTTACAATTCTACAACACAAGTGAATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACGCCAGAAGTGCATGTAGTTACAATTCTACAACACAAGTGAATAC  500

seq1  CCATTCGGCGACGCTGGCTTGACAGATCGTAAAGGGTATTTCTAGCATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCGGCGACGCTGGCTTGACAGATCGTAAAGGGTATTTCTAGCATGC  550

seq1  TGCTGGCATAGACCAAATCCTCAAGAACAGCCACCTCAATTGCCAAACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCATAGACCAAATCCTCAAGAACAGCCACCTCAATTGCCAAACTG  600

seq1  TCACTCATCTTCTATACATCATTCAGTTGTGTGCTGATCTGGGAGGCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCATCTTCTATACATCATTCAGTTGTGTGCTGATCTGGGAGGCCCA  650

seq1  GTAGTTTCAGGGATGTGTCCAACAGCCTTTGAGTCACCTTCTCTTCTAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTTCAGGGATGTGTCCAACAGCCTTTGAGTCACCTTCTCTTCTAGC  700

seq1  AGGTCTTCACACTGACTTAAGCTGTTGGGGCTCACAGACACCAGCTGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTCACACTGACTTAAGCTGTTGGGGCTCACAGACACCAGCTGAAG  750

seq1  AACCATTTGAAATGTGTTAAGACAGCTTTTTTCCATGCAGAACCCAGCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTTGAAATGTGTTAAGACAGCTTTTTTCCATGCAGAACCCAGCCC  800

seq1  AAGAGTGGAATTTCCCAGAAACCTAGAGTTATCTGACAGAGAGTGTGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGGAATTTCCCAGAAACCTAGAGTTATCTGACAGAGAGTGTGCAA  850

seq1  ATGAAGGTGACCTTCCACTCACGTTTCCTGTGACTCCCGAGAAGAACCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGTGACCTTCCACTCACGTTTCCTGTGACTCCCGAGAAGAACCCC  900

seq1  TCAATCTCAGCATTCAAGAGGCTGGGG-AAGGAAGATCGGG-AAGGAGTT  948
      ||||||||||||||||||||||||||| ||||||||||||| ||||||||
seq2  TCAATCTCAGCATTCAAGAGGCTGGGGAAAGGAAGATCGGGAAAGGAGTT  950

seq1  TAAAGTCAGTCT-GGACTACAGCCCAACCCCC-TTCCTCAGCAAACTAGC  996
      |||||||||||| ||||||||||||||||||| |||||||||||||||||
seq2  TAAAGTCAGTCTGGGACTACAGCCCAACCCCCTTTCCTCAGCAAACTAGC  1000

seq1  AG-AAACAGAAGGACTAAGGAGGTGGCTCAGTGGTAGAGCCCTTGCCTCC  1045
      || |||||||| |||||| |||   |||||||||||||| ||||| ||||
seq2  AGAAAACAGAA-GACTAAAGAG--TGCTCAGTGGTAGAG-CCTTG-CTCC  1045

seq1  TAGACTAAAACCCCAGGTTTGAAATCGATCATATCA  1081
      |||||||||| |||||||||||||||||||||||||
seq2  TAGACTAAAA-CCCAGGTTTGAAATCGATCATATCA  1080

seq1: chr1_59297546_59298178
seq2: B6Ng01-324E12.g_64_694 (reverse)

seq1  AGGCCTCACATCCATACCCATGAGAGCAGCAGCATTAGTTGGACTCCATT  50
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGGCCTCACATCCATACCCATGAGAGCAGCAGCATTAGTTGGGCTCCATT  50

seq1  GGGGAGAGAGAGGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  100
      |||||||||||||||||  |||||||||||||||||||||||||||||||
seq2  GGGGAGAGAGAGGAGAA--AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  98

seq1  GAGAGAGAGAGAGAGAACATGCAGTTGGGAGGCAGCACAAGGGGAGCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAACATGCAGTTGGGAGGCAGCACAAGGGGAGCAGG  148

seq1  AGAGAAGTGGGAGTGAATACAATCAAAACACACTGCATACATACAATAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGTGGGAGTGAATACAATCAAAACACACTGCATACATACAATAGT  198

seq1  TAAAACTATTACAAAGAGGACAGTAGGGCTAGAGATGCTCAGAAGTTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTATTACAAAGAGGACAGTAGGGCTAGAGATGCTCAGAAGTTAGG  248

seq1  CGTGCTCACTGCTCTTCCAGAGGACCCAAGTTTCGTTACAAGCACCCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCTCACTGCTCTTCCAGAGGACCCAAGTTTCGTTACAAGCACCCACA  298

seq1  TGGAACAACTCCCAGCTGCCTCTCACTTCTGGCCTTCACAGAGGTCTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACAACTCCCAGCTGCCTCTCACTTCTGGCCTTCACAGAGGTCTTCA  348

seq1  CACACATGGCGCTCATACCCAGTGATACACACATACACATACACATAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATGGCGCTCATACCCAGTGATACACACATACACATACACATAAAT  398

seq1  AAAAATTAACCTTGCCAAAAATATGGCTACCCCTGAGAGGAGGACATGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTAACCTTGCCAAAAATATGGCTACCCCTGAGAGGAGGACATGGA  448

seq1  ACAGGAGTGTCCAAAGAACTGACTGCCCATTCTTTGACTTAATCATGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGTGTCCAAAGAACTGACTGCCCATTCTTTGACTTAATCATGTGC  498

seq1  TTTTTTAAAACCTTTCTTTTGAGGAGGATCTGTTGGTTGGTTTTGGTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAAACCTTTCTTTTGAGGAGGATCTGTTGGTTGGTTTTGGTTTG  548

seq1  CTTTAGTTTTTGGTTCTCTAAGACTGGGCCTCATATAGCCCAGGGTGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTTTTTGGTTCTCTAAGACTGGGCCTCATATAGCCCAGGGTGGCC  598

seq1  TCAAATAGTGGAACCAAGATTGGCTTTGAATTC  633
      |||||||||||||||||||||||||||||||||
seq2  TCAAATAGTGGAACCAAGATTGGCTTTGAATTC  631