BAC Information

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BAC

Clone NameB6Ng01-327C01
Chromosome1 (Build37)
Map Location 195,705,826 - 195,800,875
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039677, Syt14, AA408296, Irf6, A130010J15Rik, Traf3ip3, Hsd11b1, G0s2, Lamb3, Camk1g, LOC667208
Downstream geneEG623172, Plxna2, Cd34
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327C01.bB6Ng01-327C01.g
ACCGA114755GA114756
length8551,129
definitionB6Ng01-327C01.b B6Ng01-327C01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(195,800,025 - 195,800,875)(195,705,826 - 195,706,906)
sequence
gaattctctaaaatgtaaaatatttccttcttgatttagaaggaacaaac
ccataggcaaaacatctaagaactggaggcttagcatcagccaccccacc
tgttagccagtcattagtgattctcctagctgtactccaaagctttttct
agacaaccaacaagggttgctgcccacatatttgcttctcttgactaagg
agactaggtgggtccttgttaggctggagtgatggcccaggtctatcttt
tgccacttctcaaggatacaagccctgtctcatcttatccaaagacatta
aagaaagctgcttggtgttgcacatcaaattgatttcatgccaagacttt
actcaaccacaggtgataaccattgatgtgtcaaagccttacaagaaaca
caaacacatctgatgcaaagagctctttgttttttaatgacatgtcagat
tacacaccttggcttagatctgacactggctggggctatttgctgggaag
cataaatgaaatgcataaggtctcaaattggagtggcagaaaaagtcaaa
agacattaggttcagaggtgaccacatacttaagagttagaggtgttcat
tctctctctctctctctctctctctctctctctctcactcacacacacgc
acatacatgtgcttcctttctatggctgatacaaagaaaatatatatcta
ttgcttttctgttttcaaagatgagatcacgcgtttgtcctccctagaga
gaaaacctgctacttaagaaactgcgtgagaacacccacaagcatcgttt
ttgtcaaaatatgacagataaaagtgacatgtcttaagatatacatatct
tagca

gaattctataaggagcttcatggacatagaagagaagaggcatctgcact
atgagccagtttgtcagaaagacacaaaggcaggtagattcctgaattcc
aagttagccagggacagagcaaggttaggcccagatgtgctaggaatagc
aatctcagagagagatctcacccagatagcttattgtctttgcttacaaa
ggtaggcagagatctaaattaatttttaaggttaagattaaaaagaaaaa
aatgaatatacttctgtctgcttctaagaatcagggggctggggtcatgg
aatgctggttcacgggaatatcaaaagggaacctggagtaaatgactgaa
ttgatgtatacataaaagactgagtgtttgtcttcaagaactgagctatc
tggatgagctgactggagttctccagagaaacctgccttgaatgaacaca
ggctatcagcttataccccatgatttgactttgaatcattttttttgcca
ctctcaaacacccttctctcatgaatccctctccaaaccaagactgatcc
ttggcacagttggaaatgtaacacacacaagacaagagaaactcattctt
ccctttatccactaaagaggtacagagcatagttcacaatatatccagcc
tacaatactaactcagcgcactctcttacttaaatttccagccaagtgct
cattaatagaaattaatattaataaaccaaatttgttaagttgatataag
taggttattttgtaatatagcataaatatgaaaaaacttggtacatgaga
atttatgtcttaatccttagacgtgagagaaagatttacttcatggccta
ttcaatgagtaaacatttctgattctaggttggcatccattttatcccag
aataaacaagattttgagccttctcagtctacccagtaacaggagatgac
caccacgatagtgctatgggagtcgatgctgtataaactcgacaggtttg
gccatgtcagcatattttcttgggcctcaggaaaccacagatcaggagtc
actgggtggtttctagcaatcccatctttagacaggtgggaaagttaagt
atagagtctgagagtggacgaagttggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_195800025_195800875
seq2: B6Ng01-327C01.b_46_900 (reverse)

seq1  TGCTAAGA-ATGCTTGTCTTAAGACATGTCACCTTGAACAGTCA-AAACT  48
      |||||||| |||  | |||||||||||||||| || | | |||| |   |
seq2  TGCTAAGATATGTATATCTTAAGACATGTCACTTTTATCTGTCATATTTT  50

seq1  GAAAAAAAGGATGATTGTGGGTGTATTTAAGCAG-TTCCTAAGCAGCAGG  97
      || ||||| |||| ||||||||||  | | |||| ||| |||| ||||||
seq2  GACAAAAACGATGCTTGTGGGTGTTCTCACGCAGTTTCTTAAGTAGCAGG  100

seq1  CTTTCTCTCTAGGGAGGACAAACACATGATCTCATCTTTG-AAACAGAAA  146
       |||||||||||||||||||||| | |||||||||||||| |||||||||
seq2  TTTTCTCTCTAGGGAGGACAAACGCGTGATCTCATCTTTGAAAACAGAAA  150

seq1  AGCAGAAGAGCGAGAGTATCATTGAATCAGCCAAAGAAAGGAAGGTGAGG  196
      ||||  |||   | | | || ||| |||||||| ||||||||||   | |
seq2  AGCAATAGATATATATTTTCTTTGTATCAGCCATAGAAAGGAAGCACATG  200

seq1  GATGGCCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  246
       |||  || | | | ||| |||||||||||||||||||||||||||||||
seq2  TATGTGCGTGTGTGTGAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  250

seq1  AGAGAATGAACACCTCTAACTCTTAAGTATGTGGTCACCTCTGAACCTAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATGAACACCTCTAACTCTTAAGTATGTGGTCACCTCTGAACCTAA  300

seq1  TGTCTTTTGACTTTTTCTGCCACTCCAATTTGAGACCTTATGCATTTCAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTTGACTTTTTCTGCCACTCCAATTTGAGACCTTATGCATTTCAT  350

seq1  TTATGCTTCCCAGCAAATAGCCCCAGCCAGTGTCAGATCTAAGCCAAGGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCTTCCCAGCAAATAGCCCCAGCCAGTGTCAGATCTAAGCCAAGGT  400

seq1  GTGTAATCTGACATGTCATTAAAAAACAAAGAGCTCTTTGCATCAGATGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATCTGACATGTCATTAAAAAACAAAGAGCTCTTTGCATCAGATGT  450

seq1  GTTTGTGTTTCTTGTAAGGCTTTGACACATCAATGGTTATCACCTGTGGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGTTTCTTGTAAGGCTTTGACACATCAATGGTTATCACCTGTGGT  500

seq1  TGAGTAAAGTCTTGGCATGAAATCAATTTGATGTGCAACACCAAGCAGCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAAAGTCTTGGCATGAAATCAATTTGATGTGCAACACCAAGCAGCT  550

seq1  TTCTTTAATGTCTTTGGATAAGATGAGACAGGGCTTGTATCCTTGAGAAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAATGTCTTTGGATAAGATGAGACAGGGCTTGTATCCTTGAGAAG  600

seq1  TGGCAAAAGATAGACCTGGGCCATCACTCCAGCCTAACAAGGACCCACCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAAAGATAGACCTGGGCCATCACTCCAGCCTAACAAGGACCCACCT  650

seq1  AGTCTCCTTAGTCAAGAGAAGCAAATATGTGGGCAGCAACCCTTGTTGGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCTTAGTCAAGAGAAGCAAATATGTGGGCAGCAACCCTTGTTGGT  700

seq1  TGTCTAGAAAAAGCTTTGGAGTACAGCTAGGAGAATCACTAATGACTGGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAGAAAAAGCTTTGGAGTACAGCTAGGAGAATCACTAATGACTGGC  750

seq1  TAACAGGTGGGGTGGCTGATGCTAAGCCTCCAGTTCTTAGATGTTTTGCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGGTGGGGTGGCTGATGCTAAGCCTCCAGTTCTTAGATGTTTTGCC  800

seq1  TATGGGTTTGTTCCTTCTAAATCAAGAAGGAAATATTTTACATTTTAGAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGTTTGTTCCTTCTAAATCAAGAAGGAAATATTTTACATTTTAGAG  850

seq1  AATTC  851
      |||||
seq2  AATTC  855


seq1: chr1_195705826_195706906
seq2: B6Ng01-327C01.g_122_1194

seq1  CAGTTTGTCAGAAAGACACAAAGGCAGGTAGATTCCTGAATTCCAAGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGTCAGAAAGACACAAAGGCAGGTAGATTCCTGAATTCCAAGTTA  50

seq1  GCCAGGGACAGAGCAAGGTTAGGCCCAGATGTGCTAGGAATAGCAATCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGACAGAGCAAGGTTAGGCCCAGATGTGCTAGGAATAGCAATCTC  100

seq1  AGAGAGAGATCTCACCCAGATAGCTTATTGTCTTTGCTTACAAAGGTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGATCTCACCCAGATAGCTTATTGTCTTTGCTTACAAAGGTAGG  150

seq1  CAGAGATCTAAATTAATTTTTAAGGTTAAGATTAAAAAGAAAAAAATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATCTAAATTAATTTTTAAGGTTAAGATTAAAAAGAAAAAAATGAA  200

seq1  TATACTTCTGTCTGCTTCTAAGAATCAGGGGGCTGGGGTCATGGAATGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTCTGTCTGCTTCTAAGAATCAGGGGGCTGGGGTCATGGAATGCT  250

seq1  GGTTCACGGGAATATCAAAAGGGAACCTGGAGTAAATGACTGAATTGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCACGGGAATATCAAAAGGGAACCTGGAGTAAATGACTGAATTGATG  300

seq1  TATACATAAAAGACTGAGTGTTTGTCTTCAAGAACTGAGCTATCTGGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATAAAAGACTGAGTGTTTGTCTTCAAGAACTGAGCTATCTGGATG  350

seq1  AGCTGACTGGAGTTCTCCAGAGAAACCTGCCTTGAATGAACACAGGCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACTGGAGTTCTCCAGAGAAACCTGCCTTGAATGAACACAGGCTAT  400

seq1  CAGCTTATACCCCATGATTTGACTTTGAATCATTTTTTTTGCCACTCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTATACCCCATGATTTGACTTTGAATCATTTTTTTTGCCACTCTCA  450

seq1  AACACCCTTCTCTCATGAATCCCTCTCCAAACCAAGACTGATCCTTGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCCTTCTCTCATGAATCCCTCTCCAAACCAAGACTGATCCTTGGCA  500

seq1  CAGTTGGAAATGTAACACACACAAGACAAGAGAAACTCATTCTTCCCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGAAATGTAACACACACAAGACAAGAGAAACTCATTCTTCCCTTT  550

seq1  ATCCACTAAAGAGGTACAGAGCATAGTTCACAATATATCCAGCCTACAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTAAAGAGGTACAGAGCATAGTTCACAATATATCCAGCCTACAAT  600

seq1  ACTAACTCAGCGCACTCTCTTACTTAAATTTCCAGCCAAGTGCTCATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACTCAGCGCACTCTCTTACTTAAATTTCCAGCCAAGTGCTCATTAA  650

seq1  TAGAAATTAATATTAATAAACCAAATTTGTTAAGTTGATATAAGTAGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATTAATATTAATAAACCAAATTTGTTAAGTTGATATAAGTAGGTT  700

seq1  ATTTTGTAATATAGCATAAATATGAAAAAACTTGGTACATGAGAATTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTAATATAGCATAAATATGAAAAAACTTGGTACATGAGAATTTAT  750

seq1  GTCTTAATCCTTAGACGTGAGAGAAAGATTTACTTCATGGCCTATTCAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAATCCTTAGACGTGAGAGAAAGATTTACTTCATGGCCTATTCAAT  800

seq1  GAGTAAACATTTCTGATTCTAGGTTGGCATCCATTTTATCCCAGAATAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAACATTTCTGATTCTAGGTTGGCATCCATTTTATCCCAGAATAAA  850

seq1  CAAGATTTTGAGCCTTCTCAGTCTACCCAGTAACAGGAGATGACCACCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTTTGAGCCTTCTCAGTCTACCCAGTAACAGGAGATGACCACCAC  900

seq1  GATAGTGCTAT-GGAGTCGATGCTGTATAAACTCGACAGGTTTGGCCATG  949
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GATAGTGCTATGGGAGTCGATGCTGTATAAACTCGACAGGTTTGGCCATG  950

seq1  TCAGCAATATTTCTTGGGCCTCAGGAAA-CACAGGATCAGGAGTCACTGG  998
      ||||||   ||||||||||||||||||| |||| ||||||||||||||||
seq2  TCAGCATATTTTCTTGGGCCTCAGGAAACCACA-GATCAGGAGTCACTGG  999

seq1  GTGGTTTCTAGCATTCCCATCTTTAGACAAGGTGGGAAAGGTAAGTATAG  1048
      ||||||||||||| |||||||||||||| ||||||||||| |||||||||
seq2  GTGGTTTCTAGCAATCCCATCTTTAGAC-AGGTGGGAAAGTTAAGTATAG  1048

seq1  AGGTTCTGAGAAGTGGGACAGAAAATGTTGGCT  1081
      ||  |||||| ||| |||| |||   |||||||
seq2  AG--TCTGAG-AGT-GGAC-GAA---GTTGGCT  1073


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