BAC Information

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BAC

Clone NameB6Ng01-327M03
Chromosome1 (Build37)
Map Location 29,254,521 - 29,399,513
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665903, Gm597, LOC435614, EG623924
Downstream geneEG433283, LOC100040665, LOC665944
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327M03.bB6Ng01-327M03.g
ACCGA115211GA115212
length1,1321,177
definitionB6Ng01-327M03.b B6Ng01-327M03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,398,383 - 29,399,513)(29,254,521 - 29,255,711)
sequence
gaattccaaaattcatttcaaaaggctaaaacatgaaagcaaatgcagtt
gcttattggtgtggatcaacaagtcttttctcaagttgtgctcattttgt
atgtcatcctaattttgttacccagaactattatagattaaaaataatac
ccttttccaagctatcatatgttaaaaatataataactgcaaggaaacaa
atagatttgcttcacgcaattttagaattaattatttaaatggacaattt
aatgtaacacaatgatttaactttataagccaagaaaaatgaattaaaat
ctagattagtgtcattttattcagcaacatcgttgtgttatagaaaagaa
atataagtctgtaatgtatcacagataaatatatttcatcaaatattctt
aataagattttaagtgagagtatctgtgaatattgaaatctaagtaataa
attatatgtagagattattcaataaaacaaatgtaggttatttagaaaaa
acataaacaatggacttactttccattactattctgtgcactgcatcttt
aaatgagtttgcctgatgtctagctaatatgtcaagtttaaagttttagc
tatgtactcagagctgaagacattgccacgaatcgatttaatcaacagat
ttaaccgaacctttgagatataattaaaatcaatcaatcattgattacct
ttaatacttttaaattgatttgaaatattacacccagcctctaagtgaag
ccctaatttcatgcacagattttctgattagcaactatcaataggtaggg
agcatgacttcactgagttattaaagcagcaaggaaacaaacaatacacc
attatctctctcagagcggggtggggactggaatgcaaaaattataattc
attctttctgtcttacacacaaaagctttaaacagatgggaagaacccag
aggagaggactaggatccacaaaagaaaagccatgctgctacaaatgcag
aggtttaaatcttccagcttgtcagattgtctttactcctttttcaggga
ttaatcagaacggaggagatagaaatcttcttgccctctcccatttagca
tggttttataccactaagtactcccttggatg

gaattcatagccacatcatgaatatattagatggcacagcaattaaaggc
tataaatattgtttatttcaagtttgaattttaagaattcccaaagagaa
taaggtagtaaaggagcaatcttatgaaaatacaagtaaaatattttgat
atattttagagaactgactaaagagttataaaatataagcatcagtctat
tttgtaagaccttataacactataaataacttaataaatattaatgaata
ataagtttgtgcaaatactactagagtgctataatgtgcagctactatct
cagaaaataatatattctcaatttcgcatcatgttttaaacaaaactttg
ggcatagcttcttatgaatataagaaacacaatttcaaggtaaattctct
gatcttccttctggcatttactttcttcctcctctttgtttgcaatattc
tctaatctttagatgtgggagtgttttttagatgcatctactgggaatgg
gatccataaccacatttggacttgctaaaaaattctgtagtagtcttcat
aaagtggagagtaggaggcattgcccttcccagggaggagaagataaact
ctttgcccattgccaattgttaggcatccaaaatatatgtaccagtagca
ttatacaaactgagcaggttatttaagagttatagttaaaagttattgta
caaacagtacataccactaatattctacagaacttttatatcatatggat
gtttaataatataaatccagagatatggttaaatttaatacaaaacttcc
actgtttcactatgttgatctatgccagcaatcacagcatttggaagctg
gggccagatggtagagtttgaagtcattctggactatacaaagagtcaaa
gactattctgacctgctaatgaggagatgcttagcttaaacaaagggaaa
cacacacacacacacacacacacacacacacacacacacatttggaaata
agagtagagagaggtttcatgttagatctctggaacctctgatcttcatc
atctaaaatgatattcatcaggtgatatgtaatatgatagtagaacaatt
aaattttggaataatatatgataggcatttggcacctttatgatatgctt
ctttccttctggaatagaggggagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_29398383_29399513
seq2: B6Ng01-327M03.b_46_1177 (reverse)

seq1  CATCC-AGGGAGTACTTAGTGGTATAAAAGGAATGCTAAA-GGGAGAGGG  48
      ||||| |||||||||||||||||||||||   |||||||| |||||||||
seq2  CATCCAAGGGAGTACTTAGTGGTATAAAA-CCATGCTAAATGGGAGAGGG  49

seq1  CA--GAGATTTCTATCTCCTCCGTTCTGGATTTAATCCCTGAAAAAGGAG  96
      ||   |||||||||||||||||||||||   |||||||||||||||||||
seq2  CAAGAAGATTTCTATCTCCTCCGTTCTG--ATTAATCCCTGAAAAAGGAG  97

seq1  TAAAGACAATCTGACAAGCTGGAAGATTTAAACCTCTGCATTTGTAGCAG  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACAATCTGACAAGCTGGAAGATTTAAACCTCTGCATTTGTAGCAG  147

seq1  CATGGCTTTTCCTTTTGTGGATCCTAGTCCTCTCCTCTGGGTTCTT-CCA  195
      |||||||||| ||||||||||||||||||||||||||||||||||| |||
seq2  CATGGCTTTT-CTTTTGTGGATCCTAGTCCTCTCCTCTGGGTTCTTCCCA  196

seq1  TCTGTTTAAAGCTTTTGTGTGTAAGACAGAAAGAATGAATTATAATTTTT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTAAAGCTTTTGTGTGTAAGACAGAAAGAATGAATTATAATTTTT  246

seq1  GCATTCCAGTCCCCACCCCGCTCTGAGAGAGATAATGGTGTATTGTTTGT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCCAGTCCCCACCCCGCTCTGAGAGAGATAATGGTGTATTGTTTGT  296

seq1  TTCCTTGCTGCTTTAATAACTCAGTGAAGTCATGCTCCCTACCTATTGAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGCTGCTTTAATAACTCAGTGAAGTCATGCTCCCTACCTATTGAT  346

seq1  AGTTGCTAATCAGAAAATCTGTGCATGAAATTAGGGCTTCACTTAGAGGC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCTAATCAGAAAATCTGTGCATGAAATTAGGGCTTCACTTAGAGGC  396

seq1  TGGGTGTAATATTTCAAATCAATTTAAAAGTATTAAAGGTAATCAATGAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTAATATTTCAAATCAATTTAAAAGTATTAAAGGTAATCAATGAT  446

seq1  TGATTGATTTTAATTATATCTCAAAGGTTCGGTTAAATCTGTTGATTAAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGATTTTAATTATATCTCAAAGGTTCGGTTAAATCTGTTGATTAAA  496

seq1  TCGATTCGTGGCAATGTCTTCAGCTCTGAGTACATAGCTAAAACTTTAAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATTCGTGGCAATGTCTTCAGCTCTGAGTACATAGCTAAAACTTTAAA  546

seq1  CTTGACATATTAGCTAGACATCAGGCAAACTCATTTAAAGATGCAGTGCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACATATTAGCTAGACATCAGGCAAACTCATTTAAAGATGCAGTGCA  596

seq1  CAGAATAGTAATGGAAAGTAAGTCCATTGTTTATGTTTTTTCTAAATAAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATAGTAATGGAAAGTAAGTCCATTGTTTATGTTTTTTCTAAATAAC  646

seq1  CTACATTTGTTTTATTGAATAATCTCTACATATAATTTATTACTTAGATT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTTGTTTTATTGAATAATCTCTACATATAATTTATTACTTAGATT  696

seq1  TCAATATTCACAGATACTCTCACTTAAAATCTTATTAAGAATATTTGATG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATTCACAGATACTCTCACTTAAAATCTTATTAAGAATATTTGATG  746

seq1  AAATATATTTATCTGTGATACATTACAGACTTATATTTCTTTTCTATAAC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATTTATCTGTGATACATTACAGACTTATATTTCTTTTCTATAAC  796

seq1  ACAACGATGTTGCTGAATAAAATGACACTAATCTAGATTTTAATTCATTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACGATGTTGCTGAATAAAATGACACTAATCTAGATTTTAATTCATTT  846

seq1  TTCTTGGCTTATAAAGTTAAATCATTGTGTTACATTAAATTGTCCATTTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGCTTATAAAGTTAAATCATTGTGTTACATTAAATTGTCCATTTA  896

seq1  AATAATTAATTCTAAAATTGCGTGAAGCAAATCTATTTGTTTCCTTGCAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTAATTCTAAAATTGCGTGAAGCAAATCTATTTGTTTCCTTGCAG  946

seq1  TTATTATATTTTTAACATATGATAGCTTGGAAAAGGGTATTATTTTTAAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATATTTTTAACATATGATAGCTTGGAAAAGGGTATTATTTTTAAT  996

seq1  CTATAATAGTTCTGGGTAACAAAATTAGGATGACATACAAAATGAGCACA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATAGTTCTGGGTAACAAAATTAGGATGACATACAAAATGAGCACA  1046

seq1  ACTTGAGAAAAGACTTGTTGATCCACACCAATAAGCAACTGCATTTGCTT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGAAAAGACTTGTTGATCCACACCAATAAGCAACTGCATTTGCTT  1096

seq1  TCATGTTTTAGCCTTTTGAAATGAATTTTGGAATTC  1131
      ||||||||||||||||||||||||||||||||||||
seq2  TCATGTTTTAGCCTTTTGAAATGAATTTTGGAATTC  1132


seq1: chr1_29254521_29255711
seq2: B6Ng01-327M03.g_66_1242

seq1  GAATTCATAGCCACATCATGAATATATTAGATGGCACAGCAATTAAAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGCCACATCATGAATATATTAGATGGCACAGCAATTAAAGGC  50

seq1  TATAAATATTGTTTATTTCAAGTTTGAATTTTAAGAATTCCCAAAGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATATTGTTTATTTCAAGTTTGAATTTTAAGAATTCCCAAAGAGAA  100

seq1  TAAGGTAGTAAAGGAGCAATCTTATGAAAATACAAGTAAAATATTTTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTAGTAAAGGAGCAATCTTATGAAAATACAAGTAAAATATTTTGAT  150

seq1  ATATTTTAGAGAACTGACTAAAGAGTTATAAAATATAAGCATCAGTCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAGAGAACTGACTAAAGAGTTATAAAATATAAGCATCAGTCTAT  200

seq1  TTTGTAAGACCTTATAACACTATAAATAACTTAATAAATATTAATGAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAGACCTTATAACACTATAAATAACTTAATAAATATTAATGAATA  250

seq1  ATAAGTTTGTGCAAATACTACTAGAGTGCTATAATGTGCAGCTACTATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTTGTGCAAATACTACTAGAGTGCTATAATGTGCAGCTACTATCT  300

seq1  CAGAAAATAATATATTCTCAATTTCGCATCATGTTTTAAACAAAACTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATAATATATTCTCAATTTCGCATCATGTTTTAAACAAAACTTTG  350

seq1  GGCATAGCTTCTTATGAATATAAGAAACACAATTTCAAGGTAAATTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAGCTTCTTATGAATATAAGAAACACAATTTCAAGGTAAATTCTCT  400

seq1  GATCTTCCTTCTGGCATTTACTTTCTTCCTCCTCTTTGTTTGCAATATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTCCTTCTGGCATTTACTTTCTTCCTCCTCTTTGTTTGCAATATTC  450

seq1  TCTAATCTTTAGATGTGGGAGTGTTTTTTAGATGCATCTACTGGGAATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATCTTTAGATGTGGGAGTGTTTTTTAGATGCATCTACTGGGAATGG  500

seq1  GATCCATAACCACATTTGGACTTGCTAAAAAATTCTGTAGTAGTCTTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCATAACCACATTTGGACTTGCTAAAAAATTCTGTAGTAGTCTTCAT  550

seq1  AAAGTGGAGAGTAGGAGGCATTGCCCTTCCCAGGGAGGAGAAGATAAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGAGAGTAGGAGGCATTGCCCTTCCCAGGGAGGAGAAGATAAACT  600

seq1  CTTTGCCCATTGCCAATTGTTAGGCATCCAAAATATATGTACCAGTAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCCCATTGCCAATTGTTAGGCATCCAAAATATATGTACCAGTAGCA  650

seq1  TTATACAAACTGAGCAGGTTATTTAAGAGTTATAGTTAAAAGTTATTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACAAACTGAGCAGGTTATTTAAGAGTTATAGTTAAAAGTTATTGTA  700

seq1  CAAACAGTACATACCACTAATATTCTACAGAACTTTTATATCATATGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGTACATACCACTAATATTCTACAGAACTTTTATATCATATGGAT  750

seq1  GTTTAATAATATAAATCCAGAGATATGGTTAAATTTAATACAAAACTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATAATATAAATCCAGAGATATGGTTAAATTTAATACAAAACTTCC  800

seq1  ACTGTTTCACTATGTTGATCTATGCCAGCAATCACAGCATTTGGAAGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTCACTATGTTGATCTATGCCAGCAATCACAGCATTTGGAAGCTG  850

seq1  GGGCCAGATGGTAGAGTTTGAAGTCATTCTGGACTATACAAAGAGTCAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGATGGTAGAGTTTGAAGTCATTCTGGACTATACAAAGAGTCAAA  900

seq1  GACTATTCTGACCTGCTAATGAGGAGATGCTTAGCTTAAACAAAGGGAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATTCTGACCTGCTAATGAGGAGATGCTTAGCTTAAACAAAGGGAAA  950

seq1  CACACACACACACACACACACACACACACACACACACACATTTGGAAATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACATTTGGAAATA  1000

seq1  AGAGGTAGAGAGAGGTTTCAATGTTAGATCTCTGGAACCTCTGATCTTCA  1050
      ||| ||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGA-GTAGAGAGAGGTTTC-ATGTTAGATCTCTGGAACCTCTGATCTTCA  1048

seq1  TCATTCTAAAAATGATAATTCATCAAGTGAATATGTAAATATGATAGTAG  1100
      ||| ||| |||||||| |||||||| ||| |||||| |||||||||||||
seq2  TCA-TCT-AAAATGAT-ATTCATCAGGTG-ATATGT-AATATGATAGTAG  1093

seq1  AAACCAAATTATATTTTTGATAAATATATGATA-GCATTTGGCAAACTTT  1149
      ||    ||||| ||||| ||  ||||||||||| |||||||||  || ||
seq2  AA---CAATTAAATTTTGGAATAATATATGATAGGCATTTGGC--ACCTT  1138

seq1  TATGAAATAATGCTTCTTTTCCTTCTGAGATA-AAGGGAGAAA  1191
      |||||    ||||||| ||||||||||  ||| | ||||||||
seq2  TATGA---TATGCTTC-TTTCCTTCTGGAATAGAGGGGAGAAA  1177


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