BAC Information

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BAC

Clone NameB6Ng01-329C19
Chromosome1 (Build37)
Map Location 104,241,977 - 104,243,149
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040993, LOC383650
Downstream geneLOC100041056, LOC100041067
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329C19.bB6Ng01-329C19.g
ACCGA116221GA116222
length1,2031,172
definitionB6Ng01-329C19.b B6Ng01-329C19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcagttctgaatttgttaat
taggattttgtctctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atatttcttcttgtttccacttggttgatttcacccctgagtttgattat
ttcctgccgtctactcctcttctgtgaatttgcttcctttttttctaggg
cttttagatgtgttgtcaagctgctagtatgtgctgtctctcgtttcttc
ttggaggcactcagaggtatgagtttccctcttagaaaatgctttcattg
tgttcccataggtttgggttacggtgtggctccattttccataacttcta
aaaagtctttaatttcttcttattcccttccttggaccaagtatcaatgg
aaaagagagggtaattcagttccagcggcatgtgcttcaatattaagttg
atgagatcagcttaggcatgtgtctgattaggaatcacatggggcaccat
act

gaattcctgaccaacattctttctccattgaggaaaagccctgtgttatg
tagaatgtacagcttggagttgaggccgttcctcagcatttgttcccggt
tcatttgctttcactctggggctgcagtgaacacagatttgaatctgttc
catgcattcactgtctccattgcctggcaaagattattatgattttattc
atctttgagtgacaatatatatatgtaggggtgcaagtgtcacagcctat
gtatgcagattagaagactactacaggtattggtcctttctaccttatct
gatgatgggttatctgtttggcataagtggtgcaaagatcatggtcatat
gctgcagagtctggttttccaagttctctaaggatctaaatctaggtcca
gaggacctcctcctatctgtctatagaagacaatctcctcttgtctgaat
tcagatcaagattaacaactcctagcttctttgctgggagttatgtttgc
acactgctttgcttcccatgatgatgatagtggaatgaacacctgaaact
ttagccaacaccaattaaacattgtcctttgaaagcgttgccttgatcat
tgtatctctttacagcaataaaaccctaagacaatggtgattgtgggaaa
aagactgtggcccatcctcttgctaaaagccatccttgatcttgtttcac
atagactccttccagtgagatgcctaatatgtattttgtacctgtgcaat
gttttcttttgtgtttcaagttttttatgcatttctttgggaaggaaggg
gtaatttctggattttgaagctaaaagcatacagggtttgtattagagct
cagtgcaaagtgtctgattagtatgtggactacagtaagtaactacatgt
atgtgtcattgatttattactttatttctatcatgtgtgagcagacttag
tacaggcatgtgtttgctacaatgcatgtatagaagtcaggcaaactgtg
aatccttccttctctcactgcatgttcagataaactcaagttctcaagtt
tggagcaaaagtgtctggatcattggagcaacttgccatctctcatgaat
ttcaattcgtttgtctggctaggagcatggtctttgcaaggagagctctc
taagctctctatagaagcaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_104241977_104243149
seq2: B6Ng01-329C19.g_64_1235 (reverse)

seq1  CCTTGC-TCT----AGAGCTGAGAG----CTCCTTGCCAAAAGACAAAGC  41
      |||||| |||    |||||| ||||    ||||||||  |||||| | ||
seq2  CCTTGCTTCTATAGAGAGCTTAGAGAGCTCTCCTTGC--AAAGACCATGC  48

seq1  TCCTAGCCAAAGACAAGGATTG-AATTCATTGAAGAGATGGCAAGTTGCC  90
      ||||||||| | | | | |||| |||||||   |||||||||||||||| 
seq2  TCCTAGCCAGACAAACGAATTGAAATTCAT--GAGAGATGGCAAGTTGCT  96

seq1  TCCATGACCAAGACAACTTTTTGCT-CAAACCTGAGAACTTGAGTTTTAT  139
       | |||| | |||||   ||||||| ||||| |||||||||||| |||||
seq2  CCAATGATCCAGACA--CTTTTGCTCCAAACTTGAGAACTTGAG-TTTAT  143

seq1  CTTGGAACATGCAGTGAGAGAAGGGAAGGGTTTCACAGTTTTGCCTGACT  189
      ||  ||||||||||||||||||||  | || ||||||| |||||||||||
seq2  CT--GAACATGCAGTGAGAGAAGG--AAGGATTCACAG-TTTGCCTGACT  188

seq1  TCTATACATGCATTGTAGCAAACACATGCCTGTACTAAGTCTGCTCACAC  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATACATGCATTGTAGCAAACACATGCCTGTACTAAGTCTGCTCACAC  238

seq1  ATGATAGAAATAAAGTAATAAATCAATGACACATACATGTAGTTACTTAC  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGAAATAAAGTAATAAATCAATGACACATACATGTAGTTACTTAC  288

seq1  TGTAGTCCACATACTAATCAGACACTTTGCACTGAGCTCTAATACAAACC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTCCACATACTAATCAGACACTTTGCACTGAGCTCTAATACAAACC  338

seq1  CTGTATGCTTTTAGCTTCAAAATCCAGAAATTACCCCTTCCTTCCCAAAG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATGCTTTTAGCTTCAAAATCCAGAAATTACCCCTTCCTTCCCAAAG  388

seq1  AAATGCATAAAAAACTTGAAACACAAAAGAAAACATTGCACAGGTACAAA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCATAAAAAACTTGAAACACAAAAGAAAACATTGCACAGGTACAAA  438

seq1  ATACATATTAGGCATCTCACTGGAAGGAGTCTATGTGAAACAAGATCAAG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATTAGGCATCTCACTGGAAGGAGTCTATGTGAAACAAGATCAAG  488

seq1  GATGGCTTTTAGCAAGAGGATGGGCCACAGTCTTTTTCCCACAATCACCA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTTTTAGCAAGAGGATGGGCCACAGTCTTTTTCCCACAATCACCA  538

seq1  TTGTCTTAGGGTTTTATTGCTGTAAAGAGATACAATGATCAAGGCAACGC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTAGGGTTTTATTGCTGTAAAGAGATACAATGATCAAGGCAACGC  588

seq1  TTTCAAAGGACAATGTTTAATTGGTGTTGGCTAAAGTTTCAGGTGTTCAT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAGGACAATGTTTAATTGGTGTTGGCTAAAGTTTCAGGTGTTCAT  638

seq1  TCCACTATCATCATCATGGGAAGCAAAGCAGTGTGCAAACATAACTCCCA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTATCATCATCATGGGAAGCAAAGCAGTGTGCAAACATAACTCCCA  688

seq1  GCAAAGAAGCTAGGAGTTGTTAATCTTGATCTGAATTCAGACAAGAGGAG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGAAGCTAGGAGTTGTTAATCTTGATCTGAATTCAGACAAGAGGAG  738

seq1  ATTGTCTTCTATAGACAGATAGGAGGAGGTCCTCTGGACCTAGATTTAGA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTTCTATAGACAGATAGGAGGAGGTCCTCTGGACCTAGATTTAGA  788

seq1  TCCTTAGAGAACTTGGAAAACCAGACTCTGCAGCATATGACCATGATCTT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAGAGAACTTGGAAAACCAGACTCTGCAGCATATGACCATGATCTT  838

seq1  TGCACCACTTATGCCAAACAGATAACCCATCATCAGATAAGGTAGAAAGG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCACTTATGCCAAACAGATAACCCATCATCAGATAAGGTAGAAAGG  888

seq1  ACCAATACCTGTAGTAGTCTTCTAATCTGCATACATAGGCTGTGACACTT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATACCTGTAGTAGTCTTCTAATCTGCATACATAGGCTGTGACACTT  938

seq1  GCACCCCTACATATATATATTGTCACTCAAAGATGAATAAAATCATAATA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCCTACATATATATATTGTCACTCAAAGATGAATAAAATCATAATA  988

seq1  ATCTTTGCCAGGCAATGGAGACAGTGAATGCATGGAACAGATTCAAATCT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGCCAGGCAATGGAGACAGTGAATGCATGGAACAGATTCAAATCT  1038

seq1  GTGTTCACTGCAGCCCCAGAGTGAAAGCAAATGAACCGGGAACAAATGCT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCACTGCAGCCCCAGAGTGAAAGCAAATGAACCGGGAACAAATGCT  1088

seq1  GAGGAACGGCCTCAACTCCAAGCTGTACATTCTACATAACACAGGGCTTT  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAACGGCCTCAACTCCAAGCTGTACATTCTACATAACACAGGGCTTT  1138

seq1  TCCTCAATGGAGAAAGAATGTTGGTCAGGAATTC  1173
      ||||||||||||||||||||||||||||||||||
seq2  TCCTCAATGGAGAAAGAATGTTGGTCAGGAATTC  1172


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