BAC Information

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BAC

Clone NameB6Ng01-329F01
Chromosome1 (Build37)
Map Location 34,106,778 - 34,250,918
singlet/doubletdoublet
Overlap geneDst
Upstream geneEG633498, LOC213711, LOC100040828, EG666108, Prim2, 1700001G17Rik, Rab23, Bag2, Zfp451, OTTMUSG00000022109, B230209C24Rik
Downstream geneLOC100040913, LOC383629, LOC100040938, Ccdc115, Imp4, Ptpn18, Tesp1, Cfc1, Tesp2, 9430069J07Rik, AA619741, Arhgef4, BC043098, Plekhb2, LOC666261
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329F01.bB6Ng01-329F01.g
ACCGA116311GA116312
length1,1341,111
definitionB6Ng01-329F01.b B6Ng01-329F01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,106,778 - 34,107,908)(34,249,804 - 34,250,918)
sequence
gaattctttaatcttttgattttttcaatccaggcttaactgtaatatca
tctgaggactttgaccaaattttggggtaagagatgttgaagtaattggt
tttaaatggagctgaggtagagaaatttctgaaaaggtccttcggtaatt
ccaacatgtaatcagagtcaagatagactgaagtgagctgaaacttcaag
atggtgtgctgtgctgtgggcctttcttatccacgatataagtactcgat
ctattaacctagggattcgtggcctttcatttaaaaccttgtgtttctct
tttctgtcttttcttgtctccagcatgcattttaaactttcatttttgtt
ttcagagtgattttgatagaaatcctctcattgcttttctgttgttttat
ttcaagaattaatttttgtgttgtagtcactggtgttgtgggtacatgtg
tgccacctgcctagcttggttctttctttctttctttctttctttctttc
tttctttctttctttctttcttccttccttccttccttccttccttcctt
ccttccttccttattttttttaaagattgatttatttattttatgtattt
gagtatatgagtacactgtagctgtcttcagacacaccagaagagggcat
cggatcccattatggttgtgagccaccatgtggttgctgggaattgaact
caggacctctggaagaacagttaagataacagctgagccatctctccagc
ccctgctgcttctattttgtgcatcttgttctttgctgtgcttgtgaagg
aacgccaggctgtatgcaggttagccaagtgctccccattgagggatgta
cacggccttatgcatctgtttcttactttattttatgtgtacacaatcta
attttatttttattaagtttttatctgccctcttggctctgttttctcta
acatcttttaattgaaaattctgccgttggtttagcactcacatcagtgg
cttttctaggtgttctcttctgacaagtgctccacgttttaaaagacttg
tgatgatgcctctgtggtggtgggctcatcaggtccgccctccctttcaa
gaacaagttgtctggcgattcctactgggacaac
gaattcttctgccaactttagatctttccttaaaaatacagcgatggggg
ccaatcccaactcaaaggcctgcaaacaaacacagtcccgcatctgttga
ccacgcaggaagaagcataaacccaaacacgaggagtgagagagaagggc
accctgctttctgcgaaattatgtattaaacagcaccattcatggaccac
tctctactggagctggggcccggatgtctcccccaagacctgtacttcaa
accttggcttggtgctacaaaggagaaattgaaacttttagtaggaggac
gttagatccctggagctgtccactctcaaaggtgccaggggcactctgcc
ctttcttcttctgcctttcagactgaagtgaagaattgccttgccacaaa
accagatgtgacaggactaagagaccacaggttacagcctctgaaggcat
gggcccaaatgaaccccacccccacccccgctttacttgattgctgatgg
aaagctgacaggaatgccagtgggtatcttacctctaactgcttcagctg
actcttcaaggcttctagactgctctccacagatgcctgattgtctaagg
ggggtttcatatcttgaagcaaaaccaaatattcatgcattttctcagta
tgctgtaaacactgttgcaagccattggaacactaaaaccaagattggat
acagtaattagcagtccttagggaagaaacttaaagcagacaaaatgtat
gagattgtctcccacgtttcccactggaactgtcatgggaaaccacgtat
gtcaactcactttttccttcgagctactgtcagaagacctttcttttgat
ccagatgtactttctgaatgctctgggggctcgctgcaaagttctccgag
cttctcacctcctggcagtgctgctatgtgcacactgaaaggttctacct
cggcttctcctacagcttgtgggttcagggacagtgatgtccttctttgt
ttctgaggtcactgcagacgtgtggctttttcttctgcatctgggaacag
caacatgatgttgctccaagcttcggcctgatctttttcagtgcatacca
tcaaaacagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_34106778_34107908
seq2: B6Ng01-329F01.b_45_1178

seq1  GAATTCTTTAATCTTTTGATTTTTTCAATCCAGGCTTAACTGTAATATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAATCTTTTGATTTTTTCAATCCAGGCTTAACTGTAATATCA  50

seq1  TCTGAGGACTTTGACCAAATTTTGGGGTAAGAGATGTTGAAGTAATTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGACTTTGACCAAATTTTGGGGTAAGAGATGTTGAAGTAATTGGT  100

seq1  TTTAAATGGAGCTGAGGTAGAGAAATTTCTGAAAAGGTCCTTCGGTAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGGAGCTGAGGTAGAGAAATTTCTGAAAAGGTCCTTCGGTAATT  150

seq1  CCAACATGTAATCAGAGTCAAGATAGACTGAAGTGAGCTGAAACTTCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACATGTAATCAGAGTCAAGATAGACTGAAGTGAGCTGAAACTTCAAG  200

seq1  ATGGTGTGCTGTGCTGTGGGCCTTTCTTATCCACGATATAAGTACTCGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGTGCTGTGCTGTGGGCCTTTCTTATCCACGATATAAGTACTCGAT  250

seq1  CTATTAACCTAGGGATTCGTGGCCTTTCATTTAAAACCTTGTGTTTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAACCTAGGGATTCGTGGCCTTTCATTTAAAACCTTGTGTTTCTCT  300

seq1  TTTCTGTCTTTTCTTGTCTCCAGCATGCATTTTAAACTTTCATTTTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTCTTTTCTTGTCTCCAGCATGCATTTTAAACTTTCATTTTTGTT  350

seq1  TTCAGAGTGATTTTGATAGAAATCCTCTCATTGCTTTTCTGTTGTTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGTGATTTTGATAGAAATCCTCTCATTGCTTTTCTGTTGTTTTAT  400

seq1  TTCAAGAATTAATTTTTGTGTTGTAGTCACTGGTGTTGTGGGTACATGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGAATTAATTTTTGTGTTGTAGTCACTGGTGTTGTGGGTACATGTG  450

seq1  TGCCACCTGCCTAGCTTGGTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCTGCCTAGCTTGGTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  500

seq1  TTTCTTTCTTTCTTTCTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTTCTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT  550

seq1  CCTTCCTTCCTTATTTTTTTTAAAGATTGATTTATTTATTTTATGTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTCCTTATTTTTTTTAAAGATTGATTTATTTATTTTATGTATTT  600

seq1  GAGTATATGAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATATGAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCAT  650

seq1  CGGATCCCATTATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATCCCATTATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACT  700

seq1  CAGGACCTCTGGAAGAACAGTTAAGATAACAGCTGAGCCATCTCTCCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCTCTGGAAGAACAGTTAAGATAACAGCTGAGCCATCTCTCCAGC  750

seq1  CCCTGCTGCTTCTATTTTGTGCATCTTGTTCTTTGCTGTGCTTGTGAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTGCTTCTATTTTGTGCATCTTGTTCTTTGCTGTGCTTGTGAAGG  800

seq1  AACGCCAGGCTGTATGCAGGTTAGCCAAGTGCTCCCCATTGAGGGATGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCCAGGCTGTATGCAGGTTAGCCAAGTGCTCCCCATTGAGGGATGTA  850

seq1  CACGGCCTTATGCATCTGTTTCTTACTTTATTTTATGTGTACACAATCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGCCTTATGCATCTGTTTCTTACTTTATTTTATGTGTACACAATCTA  900

seq1  ATTTTATTTTTATTAAGTTTTTATCTGCCCTCTTGGCTCTGTTTTCTCTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATTTTATTTTTATTAAGTTTTTATCTGCCCTCTTGGCTCTGTTTTCTCT-  949

seq1  AACATCTTTTAATTGAAAATTCTGCCGTTGGTTTTAGCACCTCACATCAG  1000
      ||||||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  AACATCTTTTAATTGAAAATTCTGCCGTTGG-TTTAGCA-CTCACATCAG  997

seq1  TGGCTTTTCTAGGTG-TCTCTTCTTGAC-AGTGCT-CACGTTTAAAAGGA  1047
      ||||||||||||||| ||||||| |||| |||||| ||||||| ||| ||
seq2  TGGCTTTTCTAGGTGTTCTCTTC-TGACAAGTGCTCCACGTTTTAAAAGA  1046

seq1  CTTGTGGATGATG-CTCTGT-GTGGTGGGCTCATCAAGT-CGCCCTTCCC  1094
      ||||| ||||||| |||||| ||||||||||||||| || |||||| || 
seq2  CTTGT-GATGATGCCTCTGTGGTGGTGGGCTCATCAGGTCCGCCCTCCCT  1095

seq1  TTC-AGGACGAGTTGTCTGGCGGTT-CTACTGGGACAAC  1131
      ||| || || |||||||||||| || |||||||||||||
seq2  TTCAAGAACAAGTTGTCTGGCGATTCCTACTGGGACAAC  1134

seq1: chr1_34249804_34250918
seq2: B6Ng01-329F01.g_65_1175 (reverse)

seq1  TGCTG-TTTGATGGGTATGCAACTGAAAAAGACCAGGCCGAAGCTTTGGG  49
      ||||| |||||| ||||||| ||||||||||| ||||||||||| |||| 
seq2  TGCTGTTTTGAT-GGTATGC-ACTGAAAAAGATCAGGCCGAAGC-TTGGA  47

seq1  GCAAACATCATG-TGCTGTTCCCAAGATGGCAGAAG-AAAAGCCACACGT  97
      || ||||||||| |||||||||| |||| ||||||| |||||||||||||
seq2  GC-AACATCATGTTGCTGTTCCC-AGAT-GCAGAAGAAAAAGCCACACGT  94

seq1  CTGCAGTGACCTCAGAAACAAAGAAGGACATCACTGTCCCCTGAACCCAC  147
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTGCAGTGACCTCAGAAACAAAGAAGGACATCACTGT-CCCTGAACCCAC  143

seq1  AAGCTGTAGGAGAAGCCGAGGTAGAACCCTTCAGTGTGCACATAGCAGCA  197
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAGCTGTAGGAGAAGCCGAGGTAGAACCTTTCAGTGTGCACATAGCAGCA  193

seq1  CTGCCAGGAGGTGAGAAGCTCGGAGAACTTTGCAGCGAGCCCCCAGAGCA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGGAGGTGAGAAGCTCGGAGAACTTTGCAGCGAGCCCCCAGAGCA  243

seq1  TTCAGAAAGTACATCTGGATCAAAAGAAAGGTCTTCTGACAGTAGCTCGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAAGTACATCTGGATCAAAAGAAAGGTCTTCTGACAGTAGCTCGA  293

seq1  AGGAAAAAGTGAGTTGACATACGTGGTTTCCCATGACAGTTCCAGTGGGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAAGTGAGTTGACATACGTGGTTTCCCATGACAGTTCCAGTGGGA  343

seq1  AACGTGGGAGACAATCTCATACATTTTGTCTGCTTTAAGTTTCTTCCCTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGGGAGACAATCTCATACATTTTGTCTGCTTTAAGTTTCTTCCCTA  393

seq1  AGGACTGCTAATTACTGTATCCAATCTTGGTTTTAGTGTTCCAATGGCTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGCTAATTACTGTATCCAATCTTGGTTTTAGTGTTCCAATGGCTT  443

seq1  GCAACAGTGTTTACAGCATACTGAGAAAATGCATGAATATTTGGTTTTGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAGTGTTTACAGCATACTGAGAAAATGCATGAATATTTGGTTTTGC  493

seq1  TTCAAGATATGAAACCCCCCTTAGACAATCAGGCATCTGTGGAGAGCAGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGATATGAAACCCCCCTTAGACAATCAGGCATCTGTGGAGAGCAGT  543

seq1  CTAGAAGCCTTGAAGAGTCAGCTGAAGCAGTTAGAGGTAAGATACCCACT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGCCTTGAAGAGTCAGCTGAAGCAGTTAGAGGTAAGATACCCACT  593

seq1  GGCATTCCTGTCAGCTTTCCATCAGCAATCAAGTAAAGCGGGGGTGGGGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTCCTGTCAGCTTTCCATCAGCAATCAAGTAAAGCGGGGGTGGGGG  643

seq1  TGGGGTTCATTTGGGCCCATGCCTTCAGAGGCTGTAACCTGTGGTCTCTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTCATTTGGGCCCATGCCTTCAGAGGCTGTAACCTGTGGTCTCTT  693

seq1  AGTCCTGTCACATCTGGTTTTGTGGCAAGGCAATTCTTCACTTCAGTCTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGTCACATCTGGTTTTGTGGCAAGGCAATTCTTCACTTCAGTCTG  743

seq1  AAAGGCAGAAGAAGAAAGGGCAGAGTGCCCCTGGCACCTTTGAGAGTGGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCAGAAGAAGAAAGGGCAGAGTGCCCCTGGCACCTTTGAGAGTGGA  793

seq1  CAGCTCCAGGGATCTAACGTCCTCCTACTAAAAGTTTCAATTTCTCCTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCAGGGATCTAACGTCCTCCTACTAAAAGTTTCAATTTCTCCTTT  843

seq1  GTAGCACCAAGCCAAGGTTTGAAGTACAGGTCTTGGGGGAGACATCCGGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCACCAAGCCAAGGTTTGAAGTACAGGTCTTGGGGGAGACATCCGGG  893

seq1  CCCCAGCTCCAGTAGAGAGTGGTCCATGAATGGTGCTGTTTAATACATAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCTCCAGTAGAGAGTGGTCCATGAATGGTGCTGTTTAATACATAA  943

seq1  TTTCGCAGAAAGCAGGGTGCCCTTCTCTCTCACTCCTCGTGTTTGGGTTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGCAGAAAGCAGGGTGCCCTTCTCTCTCACTCCTCGTGTTTGGGTTT  993

seq1  ATGCTTCTTCCTGCGTGGTCAACAGATGCGGGACTGTGTTTGTTTGCAGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCTTCCTGCGTGGTCAACAGATGCGGGACTGTGTTTGTTTGCAGG  1043

seq1  CCTTTGAGTTGGGATTGGCCCCCATCGCTGTATTTTTAAGGAAAGATCTA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGAGTTGGGATTGGCCCCCATCGCTGTATTTTTAAGGAAAGATCTA  1093

seq1  AAGTTGGCAGAAGAATTC  1115
      ||||||||||||||||||
seq2  AAGTTGGCAGAAGAATTC  1111