BAC Information

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BAC

Clone NameB6Ng01-330I09
Chromosome1 (Build37)
Map Location 70,254,998 - 70,420,799
singlet/doubletdoublet
Overlap geneSpag16
Upstream geneEG241084, Ikzf2
Downstream geneA830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809, Bard1, LOC667900, Abca12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330I09.bB6Ng01-330I09.g
ACCGA117163GA117164
length7871,039
definitionB6Ng01-330I09.b B6Ng01-330I09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,254,998 - 70,255,786)(70,420,096 - 70,420,799)
sequence
gaattcagtgaaattatgaactaaatatatcactccataattttctaaga
gggctatttgtatagtttcagtgatagtgtgacaaagtgtaatctaaatt
tctaaaaagtaaaataagtagataaaatagtaggtagaatagtataataa
tagaataagtataggtatggactagaataaatagacaaaatagtagataa
aatgctaatgattttgttgacagggtaatcatgaatatttttattattta
gctaaagaaccaatgttcatgtactcaagaagtgtattgaggaacttagg
aaattagtctgaacaggtgagagggtgcgccagagaacctgacagcttct
ggaacaggcggaagcacagaggcactgaggcagcaccctgtgtgggccgg
ggacagccggccaccttccggaccggaggacaggtgcccgcccggctggg
gaggcgacctaagccacagcagcagcggtcgccatcttggtccgggaccc
gccgaacttaggaaattagtctgaacaggtgagagggtgcgccagagaac
ctgacagcttctggaacaggcagaagcacagaggcgctgaggcagcaccc
tgtgtgggccggggacagccggccaccttccggaccggaggacaggtgcc
caccggcttggggaggcggcctaagccacagcagcagcggtcgccatctt
ggtcccgggactccaaggaacttaggaatttagtctgcttagtggagagt
ctgtaccactgggaactgccaagcaacacagtgtctg

gaattcattgttgaaaatcaaagacttcaagaaataaacttcaagaatgt
tcaagtatgtaaagggatatataggcatagtagtatagaaatttatctct
taagataaataaaatggataaaggtaggggtcgtgaacagtgagatatat
atatgtaaaataaaaaattactgtgtgaacaaaatatctatttagatatt
gcagaaaagaataaagatccatagagatttagttatcagtataaaaacat
caggtacaatatacatgcatttgagttttcagagaagggtagtgtggtaa
gaaacattttcaagaaataatagctaaatttgcttctaatttaaaggaaa
atatcatggttttgattaaatttttttaaaaaaatccaataacagactga
atgtaccaaagcaaatcatagtcaaaatgacaaaagaaggcataaaacaa
atcaacaacaacaaatcccatagtcgtcatagataaaagaaacaggacat
gcaggagaacagggctcccaatagcagctgacttctcacctgaaatagag
cagcaagaattatattttcaaaagtgctggatttagagattctgctaaaa
tactttatttatgaagatgaaacaaaatttcagatcaatgaaagctgaaa
aaaaattgatcggcaggaaatctttcctacaagacattctgaattgaagt
cattaatactgaatgaaaatggcaccaggcaggaactttagtgtgtgaaa
agaacaaaagcatcccaagatgatcaatacccgagccagcataaaatacc
acttcctaattttggtaactgaccactggaaatatagcaaaaaccatata
gacacaaaacatttctttttttttctaactgggggcaattcaacctataa
gaattttacctatatgaatgttacaaccatcaaaatactttattatatag
aatttgtctttacttaaattaaaattttcactgttttatgactgagccaa
tagacagataactattctcttcactttgacaggaggtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_70254998_70255786
seq2: B6Ng01-330I09.b_50_836

seq1  GAATTCAGTGAAATTATGAACTAAATATATCACTCCATAATTTTCTAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGAAATTATGAACTAAATATATCACTCCATAATTTTCTAAGA  50

seq1  GGGCTATTTGTATAGTTTCAGTGATAGTGTGACAAAGTGTAATCTAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTATTTGTATAGTTTCAGTGATAGTGTGACAAAGTGTAATCTAAATT  100

seq1  TCTAAAAAGTAAAATAAGTAGATAAAATAGTAGGTAGAATAGTATAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAAGTAAAATAAGTAGATAAAATAGTAGGTAGAATAGTATAATAA  150

seq1  TAGAATAAGTATAGGTATGGACTAGAATAAATAGACAAAATAGTAGATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATAAGTATAGGTATGGACTAGAATAAATAGACAAAATAGTAGATAA  200

seq1  AATGCTAATGATTTTGTTGACAGGGTAATCATGAATATTTTTATTATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTAATGATTTTGTTGACAGGGTAATCATGAATATTTTTATTATTTA  250

seq1  GCTAAAGAACCAATGTTCATGTACTCAAGAAGTGTATTGAGGAACTTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAGAACCAATGTTCATGTACTCAAGAAGTGTATTGAGGAACTTAGG  300

seq1  AAATTAGTCTGAACAGGTGAGAGGGTGCGCCAGAGAACCTGACAGCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGTCTGAACAGGTGAGAGGGTGCGCCAGAGAACCTGACAGCTTCT  350

seq1  GGAACAGGCGGAAGCACAGAGGCACTGAGGCAGCACCCTGTGTGGGCCGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGGCGGAAGCACAGAGGCACTGAGGCAGCACCCTGTGTGGGCCGG  400

seq1  GGACAGCCGGCCACCTTCCGGACCGGAGGACAGGTGCCCGCCCGGCTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCCGGCCACCTTCCGGACCGGAGGACAGGTGCCCGCCCGGCTGGG  450

seq1  GAGGCGACCTAAGCCACAGCAGCAGCGGTCGCCATCTTGGTCCGGGACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCGACCTAAGCCACAGCAGCAGCGGTCGCCATCTTGGTCCGGGACCC  500

seq1  GCCGAACTTAGGAAATTAGTCTGAACAGGTGAGAGGGTGCGCCAGAGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGAACTTAGGAAATTAGTCTGAACAGGTGAGAGGGTGCGCCAGAGAAC  550

seq1  CTGACAGCTTCTGGAACAGGCAGAAGCACAGAGGCGCTGAGGCAGCACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGCTTCTGGAACAGGCAGAAGCACAGAGGCGCTGAGGCAGCACCC  600

seq1  TGTGTGGGCCGGGGACAGCCGGCCACCTTCCGGACCGGAGGACAGGTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGGCCGGGGACAGCCGGCCACCTTCCGGACCGGAGGACAGGTGCC  650

seq1  CACCCGGCTGGGGAGGCGGCCTAAGCCACAGCAGCAGCGGTCGCCATCTT  700
      |||| |  ||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGGCTTGGGGAGGCGGCCTAAGCCACAGCAGCAGCGGTCGCCATCTT  700

seq1  GGTCCCGGGACTCCAAGGAACTTAGGAATTTAGTCTGCTTAGGTGAGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||  ||||||
seq2  GGTCCCGGGACTCCAAGGAACTTAGGAATTTAGTCTGCTTAGTGGAGAGT  750

seq1  CTGTACCACCTGGGAACTGCCAAAGCAACACAGTGTCTG  789
      |||||||| |||||||||||| |||||||||||||||||
seq2  CTGTACCA-CTGGGAACTGCC-AAGCAACACAGTGTCTG  787


seq1: chr1_70420096_70420799
seq2: B6Ng01-330I09.g_67_770 (reverse)

seq1  AATGACTTCAATTCAGAATGTCTTGTAGGAAAGATTTCCTGCCGATCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTTCAATTCAGAATGTCTTGTAGGAAAGATTTCCTGCCGATCAAT  50

seq1  TTTTTTTCAGCTTTCATTGATCTGAAATTTTGTTTCATCTTCATAAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCAGCTTTCATTGATCTGAAATTTTGTTTCATCTTCATAAATAA  100

seq1  AGTATTTTAGCAGAATCTCTAAATCCAGCACTTTTGAAAATATAATTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTTAGCAGAATCTCTAAATCCAGCACTTTTGAAAATATAATTCTT  150

seq1  GCTGCTCTATTTCAGGTGAGAAGTCAGCTGCTATTGGGAGCCCTGTTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTCTATTTCAGGTGAGAAGTCAGCTGCTATTGGGAGCCCTGTTCTC  200

seq1  CTGCATGTCCTGTTTCTTTTATCTATGACGACTATGGGATTTGTTGTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGTCCTGTTTCTTTTATCTATGACGACTATGGGATTTGTTGTTGT  250

seq1  TGATTTGTTTTATGCCTTCTTTTGTCATTTTGACTATGATTTGCTTTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGTTTTATGCCTTCTTTTGTCATTTTGACTATGATTTGCTTTGGT  300

seq1  ACATTCAGTCTGTTATTGGATTTTTTTAAAAAAATTTAATCAAAACCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCAGTCTGTTATTGGATTTTTTTAAAAAAATTTAATCAAAACCATG  350

seq1  ATATTTTCCTTTAAATTAGAAGCAAATTTAGCTATTATTTCTTGAAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCCTTTAAATTAGAAGCAAATTTAGCTATTATTTCTTGAAAATG  400

seq1  TTTCTTACCACACTACCCTTCTCTGAAAACTCAAATGCATGTATATTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTACCACACTACCCTTCTCTGAAAACTCAAATGCATGTATATTGTA  450

seq1  CCTGATGTTTTTATACTGATAACTAAATCTCTATGGATCTTTATTCTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGTTTTTATACTGATAACTAAATCTCTATGGATCTTTATTCTTTT  500

seq1  CTGCAATATCTAAATAGATATTTTGTTCACACAGTAATTTTTTATTTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAATATCTAAATAGATATTTTGTTCACACAGTAATTTTTTATTTTAC  550

seq1  ATATATATATCTCACTGTTCACGACCCCTACCTTTATCCATTTTATTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATCTCACTGTTCACGACCCCTACCTTTATCCATTTTATTTAT  600

seq1  CTTAAGAGATAAATTTCTATACTACTATGCCTATATATCCCTTTACATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGAGATAAATTTCTATACTACTATGCCTATATATCCCTTTACATAC  650

seq1  TTGAACATTCTTGAAGTTTATTTCTTGAAGTCTTTGATTTTCAACAATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACATTCTTGAAGTTTATTTCTTGAAGTCTTTGATTTTCAACAATGA  700

seq1  ATTC  704
      ||||
seq2  ATTC  704


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