BAC Information

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BAC

Clone NameB6Ng01-331I03
Chromosome1 (Build37)
Map Location 72,154,373 - 72,328,040
singlet/doubletdoublet
Overlap geneLOC100043255, Mreg, Pecr
Upstream geneLOC667900, Abca12, LOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319, LOC667937
Downstream geneTmem169, Xrcc5, March4, Smarcal1, Ankar, Rpl37a, Igfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331I03.bB6Ng01-331I03.g
ACCGA117853GA117854
length1,175445
definitionB6Ng01-331I03.b B6Ng01-331I03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,154,373 - 72,155,558)(72,327,590 - 72,328,040)
sequence
gaattcaatgtacccacaaaataacagaatcaataaactagttttagttt
ttacttaacaaacttacagatctcttacaatgtaccaggcaggttctgag
tattttgcaaatgctacctcactgaatcttcacaactgtcccaataaggc
aagactcctgtcaaccccgtcacagcctaggaggaaactgaggctgagat
tagagatgaaatgatcacatataagtggctcaccgagagctggaatctag
gtaggacagctctacaatttaagtttaaccagagtcaagctatatcagtc
attgtgccattagaccctatcaccttctaagttagactaagacagagcca
aaactgttgcatcttcttgtgttggtcaccatctaagatcacctcattcc
ccacctactacaataaaacagaggagaaagagcttccatcttagaagaca
actgcaatttctgtccctctgtttttaccatgttgtggctttggtcaggc
tcattggctggcctgtgatgcctcagtttctccacatattcgctacagac
attgatcccttcttccacaggttatcggagaggctgaagagatcatagcg
ctacaagtgctttgggaattgtttctgccactagtgaaccttgcccctct
gatgatgaatacgtgctgtaattaagaaagcagtgtccccatttcttcat
tacaggcagcccttaccagttggggaaaaaaaaaaatctctcaaataaaa
gaagtaagtccttatgtttctttgtgctagaggctgttgctgctgccagc
aatccaaaataaatcacttcatgaggtaaggtctgtttatattattccac
tacctgatgacttcctgtgtatgacattcaaatggaagcatctcagccaa
aggcccataaagtcatttccccaacgctttacacttagccggctaaacat
ctgcttgttttggccacctgagttggtgagtttcacttgcaccacaagtg
cggtgcaagtatcagagagaccagaacacttccttccttccgtggttcct
caagagctgattatagctcccacggccactattagactaggcagccgaga
accacaacagcctggcttcattacactcagtcaatgccatacattttcag
gtacagctgggccaaggttgcattc
ctaggacctacatggtggagagggcagattcctggaagctctgacctcca
catgggtgctgtgacacacacacacacacacacacacacacacacacaca
cacattgaacaaatgtaataaaaggaagtaatatagttaatgtttcaaaa
ttgctagaagactttttttgtttggttggtttcttcttttcctttatagc
tttggctagtctgaaagtcacagagattcacctgcctctgcctcctgagt
agtgggattagattcaagagtcactacatctggtctttactttacgttta
actgacaattaaattatctgtattgataattgaacccagagctttgtgca
tgatcagcaaagttctttaccacctggatacgtccccagacctctcttta
aaaacaaagcaacaataacaaaacctttttatttgaaatctggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_72154373_72155558
seq2: B6Ng01-331I03.b_45_1219

seq1  GAATTCAATGTACCCACAAAATAACAGAATCAATAAACTAGTTTTAGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGTACCCACAAAATAACAGAATCAATAAACTAGTTTTAGTTT  50

seq1  TTACTTAACAAACTTACAGATCTCTTACAATGTACCAGGCAGGTTCTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTAACAAACTTACAGATCTCTTACAATGTACCAGGCAGGTTCTGAG  100

seq1  TATTTTGCAAATGCTACCTCACTGAATCTTCACAACTGTCCCAATAAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGCAAATGCTACCTCACTGAATCTTCACAACTGTCCCAATAAGGC  150

seq1  AAGACTCCTGTCAACCCCGTCACAGCCTAGGAGGAAACTGAGGCTGAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCCTGTCAACCCCGTCACAGCCTAGGAGGAAACTGAGGCTGAGAT  200

seq1  TAGAGATGAAATGATCACATATAAGTGGCTCACCGAGAGCTGGAATCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATGAAATGATCACATATAAGTGGCTCACCGAGAGCTGGAATCTAG  250

seq1  GTAGGACAGCTCTACAATTTAAGTTTAACCAGAGTCAAGCTATATCAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGACAGCTCTACAATTTAAGTTTAACCAGAGTCAAGCTATATCAGTC  300

seq1  ATTGTGCCATTAGACCCTATCACCTTCTAAGTTAGACTAAGACAGAGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGCCATTAGACCCTATCACCTTCTAAGTTAGACTAAGACAGAGCCA  350

seq1  AAACTGTTGCATCTTCTTGTGTTGGTCACCATCTAAGATCACCTCATTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTTGCATCTTCTTGTGTTGGTCACCATCTAAGATCACCTCATTCC  400

seq1  CCACCTACTACAATAAAACAGAGGAGAAAGAGCTTCCATCTTAGAAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTACTACAATAAAACAGAGGAGAAAGAGCTTCCATCTTAGAAGACA  450

seq1  ACTGCAATTTCTGTCCCTCTGTTTTTACCATGTTGTGGCTTTGGTCAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAATTTCTGTCCCTCTGTTTTTACCATGTTGTGGCTTTGGTCAGGC  500

seq1  TCATTGGCTGGCCTGTGATGCCTCAGTTTCTCCACATATTCGCTACAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGCTGGCCTGTGATGCCTCAGTTTCTCCACATATTCGCTACAGAC  550

seq1  ATTGATCCCTTCTTCCACAGGTTATCGGAGAGGCTGAAGAGATCATAGCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATCCCTTCTTCCACAGGTTATCGGAGAGGCTGAAGAGATCATAGCG  600

seq1  CTACAAGTGCTTTGGGAATTGTTTCTGCCACTAGTGAACCTTGCCCCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGTGCTTTGGGAATTGTTTCTGCCACTAGTGAACCTTGCCCCTCT  650

seq1  GATGATGAATACGTGCTGTAATTAAGAAAGCAGTGTCCCCATTTCTTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGAATACGTGCTGTAATTAAGAAAGCAGTGTCCCCATTTCTTCAT  700

seq1  TACAGGCAGCCCTTACCAGTTGGGG-AAAAAAAAAATCTCTCAAATAAAA  749
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TACAGGCAGCCCTTACCAGTTGGGGAAAAAAAAAAATCTCTCAAATAAAA  750

seq1  GAAGTAAGTCCTTATGTTTCTTTGTGCTAGAGGCTGTTGCTGCTGCCAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAAGTCCTTATGTTTCTTTGTGCTAGAGGCTGTTGCTGCTGCCAGC  800

seq1  AATCCAAAATAAATCACTTCATGAGGTAAGGTCTGTTTATATTATTCCAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAAAATAAATCACTTCATGAGGTAAGGTCTGTTTATATTATTCCAC  850

seq1  TACCTGATGACTTCCTGTGTATGACATTCAAATGGAAGCATCTCAGCCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGATGACTTCCTGTGTATGACATTCAAATGGAAGCATCTCAGCCAA  900

seq1  AGGCCCATAAAGTCATTTCCCCAACGCTTTACACTTAGCCGGCTAAACAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCATAAAGTCATTTCCCCAACGCTTTACACTTAGCCGGCTAAACAT  950

seq1  CTGCTTGTTTTGGCCACCTGAGTTGGTGAGTTTCACTTTGCACCAC-AGT  998
      |||||||||||||||||||||||||||||||||||| ||||||||| |||
seq2  CTGCTTGTTTTGGCCACCTGAGTTGGTGAGTTTCAC-TTGCACCACAAGT  999

seq1  GCGGTGCAGGTATCAAGAGAGGACCCAGACACTTTCTTTCCTCCGT-GTC  1047
      |||||||| ||||| ||||| ||||   |||||| ||| | ||||| || 
seq2  GCGGTGCAAGTATC-AGAGA-GACCAGAACACTTCCTTCCTTCCGTGGTT  1047

seq1  TCAAAAGAGGCCTTGATTTATAGCT-CCACGGCCACTATTAGAACTA-GC  1095
       |  |||||    ||| |||||||| |||||||||||||||| |||| ||
seq2  CCTCAAGAG---CTGA-TTATAGCTCCCACGGCCACTATTAG-ACTAGGC  1092

seq1  AGCGAAGAAACCACAACAGCTGGGCTTCATTACACTCAGTCAATGGCCAT  1145
      |||  || ||||||||||||  |||||||||||||||||||||| |||||
seq2  AGCCGAG-AACCACAACAGCCTGGCTTCATTACACTCAGTCAAT-GCCAT  1140

seq1  AACATTTTTTAAGGTAGCAGGCTGGGCCCAAGGTTGCATTC  1186
       |||  |||| ||||| || |||||| ||||||||||||||
seq2  -ACA--TTTTCAGGTA-CA-GCTGGG-CCAAGGTTGCATTC  1175

seq1: chr1_72327590_72328040
seq2: B6Ng01-331I03.g_68_518 (reverse)

seq1  GGCCAGACTTCAAATAAAAAGGTTTTGTTATTGTTGCTTTGTTTTTAAAG  50
      | ||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGATTTCAAATAAAAAGGTTTTGTTATTGTTGCTTTGTTTTTAAAG  50

seq1  AGAGGTCTGGGGACGTATCCAGGTGGTAAAGAACTTTGCTGATCATGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTCTGGGGACGTATCCAGGTGGTAAAGAACTTTGCTGATCATGCAC  100

seq1  AAAGCTCTGGGTTCAATTCTCAGTACAGATAATTTAATTGTCAGTTAAAT  150
      |||||||||||||||||| ||| |||||||||||||||||||||||||| 
seq2  AAAGCTCTGGGTTCAATTATCAATACAGATAATTTAATTGTCAGTTAAAC  150

seq1  GTAAAGTAAAGACCAGATGTAGTGACTCTTGAATCTAATCCCACTACTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGTAAAGACCAGATGTAGTGACTCTTGAATCTAATCCCACTACTCA  200

seq1  GGAGGCAGAGGCAGGTGAATCTCTGTGACTTTCAGACTAGCCAAAGCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGAGGCAGGTGAATCTCTGTGACTTTCAGACTAGCCAAAGCTAT  250

seq1  AAAGGAAAAGAAGAAACCAACCAAACAAAAAAAGTCTTCTAGCAATTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAAGAAGAAACCAACCAAACAAAAAAAGTCTTCTAGCAATTTTG  300

seq1  AAACATTAACTATATTACTTCCTTTTATTACATTTGTTCAATGTGTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTAACTATATTACTTCCTTTTATTACATTTGTTCAATGTGTGTGT  350

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCACAGCACCCATGTGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCACAGCACCCATGTGGAG  400

seq1  GTCAGAGCTTCCAGGAATCTGCCCTCTCCACCATGTAGGTCCTAGGAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGCTTCCAGGAATCTGCCCTCTCCACCATGTAGGTCCTAGGAATT  450

seq1  C  451
      |
seq2  C  451