BAC Information

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BAC

Clone NameB6Ng01-331M04
Chromosome1 (Build37)
Map Location 90,063,046 - 90,225,846
singlet/doubletdoublet
Overlap geneUgt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8
Upstream gene1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561
Downstream geneSpp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4, LOC383542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331M04.bB6Ng01-331M04.g
ACCGA118044GA118045
length1,1241,092
definitionB6Ng01-331M04.b B6Ng01-331M04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,224,728 - 90,225,846)(90,063,046 - 90,064,108)
sequence
gaattcccaagactccgatccagcaatgcaagtttgtacctgcaggtgaa
ctcttttgaggtggatttggatcggggctataaaaacaatgggtccaaat
ctaacctgagtttgctggggacagattttaatgacaaaatacctagtagt
tagcccatgctttggagtcccttaagtatccccgcgacaacccttgtttt
ttaattgccaaaaaggaactcactctgtagaccaggctggcctcgaactc
agagatccccctgcctctgcctcccaagtgctgggattaaaggcgtgcac
caccacacctggctaaaaatgctgttcttataaggcaggctttccatgat
ctggctccatcacagagccctagccctcaggccaagcccagtggttctca
acccctggctcgcaacttctttgaggatcaaacagtcctttcacagaggt
cacatattagatatcctatatatcagatgtttacaatacggttcctaaca
gtagcaaaactacagttatgaagtagaacaaaaacaattttatggttggg
ggttgtagtctcccctcccccagcctgaaacctgcttgctcaggggtgga
gcttcctgctcattcgttctgccacgcccactgctggaacctgcggagcc
acacccgtgcacctttctactggaccagagattattcggcgggaatcggg
tcccctcccccttccttcataactagtgtcgcaacaataaaatttgagcc
ttgatcagagtaactgtcttggctacattctttcttccgccccgtctaga
ttcctctcttacagctcgagcggccttctcagtcgaaccgttcacgttgc
gagctgctggcggccgcaacaggggggtcaccacagccatagccgctgcc
ctggtttttctcccatgtgatctagcagagccccctttctcacccatacc
tcatcatcacagctcctgatgagggtgtccctgtggagaccatgccccat
gctgcgatgcccaatggccacgatgttcctctttctggagttcctgctga
tgtgttgtctctcacactcgcttatgttacttcatcagccgtattgaagt
tgcctccagttgagattcccacgc
ctttgatgtagtctttacagatcccgtgtttccctgtggggcattgttgg
ccaagtacttaggtattcctgctgtgttctttctacgatacatcccctgt
ggcatagaatatgaggccacacagtgtccaagcccttcctcttatattcc
gaacctattcacaaggctttccgaccacatggacttcctgcaaagggtcc
agaacatgctgtaccatctggtcttgaagtacatttgccatttattgatc
actccctatgaaagcctggcctctgagctttttcagagagaagtgtcctc
agtggagcttttcagctatgcatccgtgtggctgttccgaggggactttg
tactcgactaccccaggcccatcatgcctaacatggtcttcattgggggc
ataaactgtgttaccaagaagcccctctctcaggtctgtatttttaagca
atcagtattctatgcagaatatattttctaatactaactttccttctggt
ctttaaaaggattcttcccctttttctcatatcttcataacataaactat
tttatttgggtctttttgtttttattttatgtgtatggttttttgcctgt
atgccatgtatatttgtgcaccacatgcatacagtgaccatggaggccag
aagaaaacattgaatcccctagaactagaattacaaatggcggtgagcca
tcatgtgtgtccttggaactcagttcccctggaagagcagccacctctcc
agcctcagattcttctatttttctttggccattggtaggactggtggctg
tggtgagggtctgtaatggactgaagtgggggggagggctctacttgagt
tctatccatgttggcagtttattaatttttcctgagagtgagatttccaa
actgggggcaatgaaccagaagattaatgaacctgctgaccttattacgt
atgagtttcaaccgttaagtattttcctaggtgaaggaccaatggaacct
tcaaatttgcccatggttaggttcatggggcatttctaccatttcctagt
tgaccccctctaagtatcttttcttcgcggttaaacaaaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_90224728_90225846
seq2: B6Ng01-331M04.b_47_1170 (reverse)

seq1  GCGT-GGATTCTC-ACTGGAGGCA--CTCACTACGGCCTGATGAAGT-AC  45
      |||| ||| |||| ||||||||||   ||| ||||| |||||||||| ||
seq2  GCGTGGGAATCTCAACTGGAGGCAACTTCAATACGG-CTGATGAAGTAAC  49

seq1  ATAGGCGAGGTGGTGAGAGACAACACCATCAGCAGGAACT-CAG-AAGA-  92
      ||| |||||   ||||||||||||| |||||||||||||| ||| |||| 
seq2  ATAAGCGAG--TGTGAGAGACAACA-CATCAGCAGGAACTCCAGAAAGAG  96

seq1  GAACATCGTGGCCATT-GGCATCGCAGCATGGGGCATGGTCTCCAACAGG  141
      |||||||||||||||| ||||||||||||||||||||||||||| |||||
seq2  GAACATCGTGGCCATTGGGCATCGCAGCATGGGGCATGGTCTCC-ACAGG  145

seq1  GACACCCTCATCAGGAGCTGTGATGATGAGGTATGGGTGAGAAAGGGGGC  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCCTCATCAGGAGCTGTGATGATGAGGTATGGGTGAGAAAGGGGGC  195

seq1  TCTGCTAGATCACATGGGAGAAAAACCAGGGCAGCGGCTATGGCTGTGGT  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTAGATCACATGGGAGAAAAACCAGGGCAGCGGCTATGGCTGTGGT  245

seq1  GA-CCCCCTGTTGCGGCCGCCAGCAGCTCGCAACGTGAACGGTTCGACTG  290
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCCCTGTTGCGGCCGCCAGCAGCTCGCAACGTGAACGGTTCGACTG  295

seq1  AGAAGGCCGCTCGAGCTGTAAGAGAGGAATCTAGACGGGGCGGAAGAAAG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCCGCTCGAGCTGTAAGAGAGGAATCTAGACGGGGCGGAAGAAAG  345

seq1  AATGTAGCCAAGACAGTTACTCTGATCAAGGCTCAAATTTTATTGTTGCG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGCCAAGACAGTTACTCTGATCAAGGCTCAAATTTTATTGTTGCG  395

seq1  ACACTAGTTATGAAGGAAGGGGGAGGGGACCCGATTCCCGCCGAATAATC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAGTTATGAAGGAAGGGGGAGGGGACCCGATTCCCGCCGAATAATC  445

seq1  TCTGGTCCAGTAGAAAGGTGCACGGGTGTGGCTCCGCAGGTTCCAGCAGT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTCCAGTAGAAAGGTGCACGGGTGTGGCTCCGCAGGTTCCAGCAGT  495

seq1  GGGCGTGGCAGAACGAATGAGCAGGAAGCTCCACCCCTGAGCAAGCAGGT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGTGGCAGAACGAATGAGCAGGAAGCTCCACCCCTGAGCAAGCAGGT  545

seq1  TTCAGGCTGGGGGAGGGGAGACTACAACCCCCAACCATAAAATTGTTTTT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCTGGGGGAGGGGAGACTACAACCCCCAACCATAAAATTGTTTTT  595

seq1  GTTCTACTTCATAACTGTAGTTTTGCTACTGTTAGGAACCGTATTGTAAA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTACTTCATAACTGTAGTTTTGCTACTGTTAGGAACCGTATTGTAAA  645

seq1  CATCTGATATATAGGATATCTAATATGTGACCTCTGTGAAAGGACTGTTT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGATATATAGGATATCTAATATGTGACCTCTGTGAAAGGACTGTTT  695

seq1  GATCCTCAAAGAAGTTGCGAGCCAGGGGTTGAGAACCACTGGGCTTGGCC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTCAAAGAAGTTGCGAGCCAGGGGTTGAGAACCACTGGGCTTGGCC  745

seq1  TGAGGGCTAGGGCTCTGTGATGGAGCCAGATCATGGAAAGCCTGCCTTAT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGCTAGGGCTCTGTGATGGAGCCAGATCATGGAAAGCCTGCCTTAT  795

seq1  AAGAACAGCATTTTTAGCCAGGTGTGGTGGTGCACGCCTTTAATCCCAGC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAGCATTTTTAGCCAGGTGTGGTGGTGCACGCCTTTAATCCCAGC  845

seq1  ACTTGGGAGGCAGAGGCAGGGGGATCTCTGAGTTCGAGGCCAGCCTGGTC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGAGGCAGAGGCAGGGGGATCTCTGAGTTCGAGGCCAGCCTGGTC  895

seq1  TACAGAGTGAGTTCCTTTTTGGCAATTAAAAAACAAGGGTTGTCGCGGGG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGTGAGTTCCTTTTTGGCAATTAAAAAACAAGGGTTGTCGCGGGG  945

seq1  ATACTTAAGGGACTCCAAAGCATGGGCTAACTACTAGGTATTTTGTCATT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTAAGGGACTCCAAAGCATGGGCTAACTACTAGGTATTTTGTCATT  995

seq1  AAAATCTGTCCCCAGCAAACTCAGGTTAGATTTGGACCCATTGTTTTTAT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTGTCCCCAGCAAACTCAGGTTAGATTTGGACCCATTGTTTTTAT  1045

seq1  AGCCCCGATCCAAATCCACCTCAAAAGAGTTCACCTGCAGGTACAAACTT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCGATCCAAATCCACCTCAAAAGAGTTCACCTGCAGGTACAAACTT  1095

seq1  GCATTGCTGGATCGGAGTCTTGGGAATTC  1119
      |||||||||||||||||||||||||||||
seq2  GCATTGCTGGATCGGAGTCTTGGGAATTC  1124

seq1: chr1_90063046_90064108
seq2: B6Ng01-331M04.g_82_1173

seq1  CTTTGATGTAGTCTTTACAGATCCCGTGTTTCCCTGTGGGGCATTGTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATGTAGTCTTTACAGATCCCGTGTTTCCCTGTGGGGCATTGTTGG  50

seq1  CCAAGTACTTAGGTATTCCTGCTGTGTTCTTTCTACGATACATCCCCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTACTTAGGTATTCCTGCTGTGTTCTTTCTACGATACATCCCCTGT  100

seq1  GGCATAGAATATGAGGCCACACAGTGTCCAAGCCCTTCCTCTTATATTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAGAATATGAGGCCACACAGTGTCCAAGCCCTTCCTCTTATATTCC  150

seq1  GAACCTATTCACAAGGCTTTCCGACCACATGGACTTCCTGCAAAGGGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTATTCACAAGGCTTTCCGACCACATGGACTTCCTGCAAAGGGTCC  200

seq1  AGAACATGCTGTACCATCTGGTCTTGAAGTACATTTGCCATTTATTGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATGCTGTACCATCTGGTCTTGAAGTACATTTGCCATTTATTGATC  250

seq1  ACTCCCTATGAAAGCCTGGCCTCTGAGCTTTTTCAGAGAGAAGTGTCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCTATGAAAGCCTGGCCTCTGAGCTTTTTCAGAGAGAAGTGTCCTC  300

seq1  AGTGGAGCTTTTCAGCTATGCATCCGTGTGGCTGTTCCGAGGGGACTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGCTTTTCAGCTATGCATCCGTGTGGCTGTTCCGAGGGGACTTTG  350

seq1  TACTCGACTACCCCAGGCCCATCATGCCTAACATGGTCTTCATTGGGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCGACTACCCCAGGCCCATCATGCCTAACATGGTCTTCATTGGGGGC  400

seq1  ATAAACTGTGTTACCAAGAAGCCCCTCTCTCAGGTCTGTATTTTTAAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTGTGTTACCAAGAAGCCCCTCTCTCAGGTCTGTATTTTTAAGCA  450

seq1  ATCAGTATTCTATGCAGAATATATTTTCTAATACTAACTTTCCTTCTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTATTCTATGCAGAATATATTTTCTAATACTAACTTTCCTTCTGGT  500

seq1  CTTTAAAAGGATTCTTCCCCTTTTTCTCATATCTTCATAACATAAACTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAAGGATTCTTCCCCTTTTTCTCATATCTTCATAACATAAACTAT  550

seq1  TTTATTTGGGTCTTTTTGTTTTTATTTTATGTGTATGGTTTTTTGCCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGGGTCTTTTTGTTTTTATTTTATGTGTATGGTTTTTTGCCTGT  600

seq1  ATGCCATGTATATTTGTGCACCACATGCATACAGTGACCATGGAGGCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATGTATATTTGTGCACCACATGCATACAGTGACCATGGAGGCCAG  650

seq1  AAGAAAACATTGAATCCCCTAGAACTAGAATTACAAATGGCGGTGAGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAACATTGAATCCCCTAGAACTAGAATTACAAATGGCGGTGAGCCA  700

seq1  TCATGTGTGTCCTTGGAACTCAGTTCCCCTGGAAGAGCAGCCACCTCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGTGTCCTTGGAACTCAGTTCCCCTGGAAGAGCAGCCACCTCTCC  750

seq1  AGCCTCAGATTCTTCTATTTTTCTTTGGCCATTGGTAGGACTGGTGGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCAGATTCTTCTATTTTTCTTTGGCCATTGGTAGGACTGGTGGCTG  800

seq1  TGGTGAGGGTCTGTAATGGACTGAAGT-GGGGGGAGGGCTCTAC-TGAG-  847
      ||||||||||||||||||||||||||| |||||||||||||||| |||| 
seq2  TGGTGAGGGTCTGTAATGGACTGAAGTGGGGGGGAGGGCTCTACTTGAGT  850

seq1  TCTATCCATG-TGGCAGTTTATTA--TTTTCCTGAGAGTGAGATTTCCAA  894
      |||||||||| |||||||||||||  ||||||||||||||||||||||||
seq2  TCTATCCATGTTGGCAGTTTATTAATTTTTCCTGAGAGTGAGATTTCCAA  900

seq1  ACT-GGGGCA--GGAACAG-AGA-TAATG-AGCTGCTGACC-TATTACG-  936
      ||| ||||||  | | ||| ||| ||||| | ||||||||| ||||||| 
seq2  ACTGGGGGCAATGAACCAGAAGATTAATGAACCTGCTGACCTTATTACGT  950

seq1  ATGAG-TTCAAC--GTAAGTATTT--CTAGGTG-AGGA-CAAAGGAA-CT  978
      ||||| ||||||   |||||||||  ||||||| |||| ||| |||| ||
seq2  ATGAGTTTCAACCGTTAAGTATTTTCCTAGGTGAAGGACCAATGGAACCT  1000

seq1  TCAAATT--GCCATTGTTA-GTTCTATGGGCATTTCTACCATTTCCTAG-  1024
      |||||||   |||| |||| ||||   |||||||||||||||||||||| 
seq2  TCAAATTTGCCCATGGTTAGGTTCATGGGGCATTTCTACCATTTCCTAGT  1050

seq1  TGTCCCCTTC--AATATC-TTTCTTCAGTGTTAAACAAAACA  1063
      || |||| ||  | |||| |||||||   |||||||||||||
seq2  TGACCCCCTCTAAGTATCTTTTCTTCGCGGTTAAACAAAACA  1092