BAC Information

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BAC

Clone NameB6Ng01-331M06
Chromosome1 (Build37)12 (Build37)
Map Location 85,055,271 - 85,055,79196,421,187 - 96,422,351
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene5033414K04Rik, LOC100039638, Dner, Trip12, Fbxo36, Slc16a14, LOC100039695, EG665317
Downstream geneLOC100039723, A530032D15Rik, LOC100039742, LOC100040158, LOC621835, EG665378, C130026I21Rik, LOC100040135, LOC639868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331M06.bB6Ng01-331M06.g
ACCGA118048GA118049
length1,1721,151
definitionB6Ng01-331M06.b B6Ng01-331M06.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(85,055,271 - 85,055,791)(96,421,187 - 96,422,351)
sequence
gaattctttgttcagctctgagacccattttttaatggggttatttgatt
ttctggagtccaccttttgagttctttatatatattgaatattagtcccc
tatctgatttaggataggtaaagatcttttccaaatctgttggtggtctt
tttgtcttgttgatggtgtcttttgtcttgcagaagctttacaactttat
gaggtcccattgattgattctcgatcttacaacacaaaacattgctgttc
tattcaggaactgttcccttgtacccatatcttcgaggcttttccctact
ttctcctctataagtttcagtgtctctggttttatgtggagttccttaat
ccacttagatttgaccttagtacaaggagctaggaatggatcaattcaca
ttcttctacatgataacagccagttgtgccagcaccatttgttgaaaatt
ctgtctttttttcactggatggttttagctcccttgtcaaagatcaagtg
accataggtatgtgggttcatctctgggtcttcaattctgttccattggt
ctacttgtcagttgctataccagtaccatgcagtttttatcacaattgct
ctgtagtacacctttaggtcaggcatggtgtttccaccagaggtgctttt
atccttgagaagagtttttgctatcctaggtttttgttattcctgatgaa
tttgcaaattgctccctccaattcgttgaagaattgagttggaattttga
tggggattgcattgaatctgtagattgcttttggcaagatagccattttt
actatatagatcctaccaatccatgagcatgggagatctttccatcttct
gagatctttaatttctttcttcagagatttgaagttcttatcatacagat
cttttcacttcttagttagagtcaagcctaggtattttatattatttgtg
actattgagaatggtgttgtttccctaattctttctcggcctgtttattc
ttcttatgtacagaaagaccattgacttgttgagttattttatatcagct
acttcatgatgctgtttatcaggcttagagttcctctgggtgatttttag
gtcactatatatactatgatatcatctgcaagtaattttggactccttcc
tttccaatttgtatatccccct
gaattctcttttttttttttgagagtgtataaaagctgtataaaggaaac
atctacagatatttaaaacctcttaaaatattgaatacattttgccaaat
aatatccgttcttatactctttcacttacattgctgactagacaaaatga
tgtaagaatgattaaataatgcctaatcttctctcacctaacttagtaac
atgatttcagctactttctgagtagaacattttccccatttttattgctc
ttttctccctattagagacttgaggataacaatagtagctatcattatgg
aagatctgccatttctagctgcagctatcattatctcttaccccaagtta
taagctataattcctgactgagaggtgaaactatgcgataacaaataact
ccctcaaggtcataaggagtgtgagcttctcagccaagattcgagcttaa
attctgttcttttccctgtagtacacagtgtatctgagaggaatctgttg
tgataagacggccaaagtgcttagttggagcagtgctggtgtttatttga
ctgtacatagacttctttcatagaaccatgtgcaaagtatatttttcttt
taaaaagcttcaattaccatatattgtgggtttaagtgaaagagtcatat
aaagtgacccacatttctctgtataaacattcaggttttgatttaatgta
tacgtttacctatcctgctgttactctaagcagttgcagccctggggcag
aaaggaggagattcagtgttctgttgagttgctcattagacctcacagga
ccagggaaattaggcagcaagctggtacaagcatctttatgttgacttct
tagtctcattgaatatcagactaagaaaagatctgacgaatgggctcagt
gggtaaactggatgcaaaattaaagtcagcctgctcaagtctttcagtaa
atataaattaaacccaaagcattatgagaaataatagtctgcatgtcata
ttttagtagtaaaaaggagaaaaagttaaaattgagaaacataaaagtac
acacttcagaaagagtaagatgagagctgagagagcgaggaatgtggaga
cgacagttctgggtttctaccatagtctaacctagatcagtgcaagtgtg
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_85055271_85055791
seq2: B6Ng01-331M06.b_708_1217 (reverse)

seq1  AGGGG---ATACAAATTGGAAAGGAGGAAGTCAAAATATCACTTTTTGCA  47
      |||||   ||||||||||||||||| | |||| ||| || ||   |||||
seq2  AGGGGGATATACAAATTGGAAAGGAAGGAGTCCAAA-ATTAC---TTGCA  46

seq1  GATGATATGATAGTATATATAAGTGACCCTAAAAATTCCACCAGA-GAAC  96
      |||||||| ||||||||||| ||||| |||||||| ||  ||||| ||||
seq2  GATGATATCATAGTATATAT-AGTGA-CCTAAAAA-TCACCCAGAGGAAC  93

seq1  TCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATTAAC  146
      | |||| ||||||||||||| ||  |||||||||| ||||||||| ||||
seq2  T-CTAAGCCTGATAAACAGCATC-ATGAAGTAGCT-GATATAAAA-TAAC  139

seq1  TCAAACAAGTCAATGGCCTTTCTCTACACA--AAGAATAAACAGGCTGAG  194
      || ||||||||||||| |||||| |||| |  |||||||||||||| |||
seq2  TC-AACAAGTCAATGGTCTTTCTGTACATAAGAAGAATAAACAGGCCGAG  188

seq1  AAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAA  244
      |||| |||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAAG-AATTAGGGAAACAACACCATTCTCAATAGTCACAAATAATATAAA  237

seq1  ATATCTCGGCGTGACTCTAACTAAGGAAGTG-AAAGATCTGTATGATAAA  293
      ||| || ||| ||||||||||||| |||||| ||||||||||||||||| 
seq2  ATACCTAGGCTTGACTCTAACTAA-GAAGTGAAAAGATCTGTATGATAAG  286

seq1  AACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAA  343
      |||||||| |||||||||||||||||||   |||||||||||||||||||
seq2  AACTTCAAATCTCTGAAGAAAGAAATTA---AAGATCTCAGAAGATGGAA  333

seq1  AGATCTCCCATGCTCATGGATTGGCAGGATCAATATTGTAAAAATGGCTA  393
      |||||||||||||||||||||||| |||||| |||| |||||||||||||
seq2  AGATCTCCCATGCTCATGGATTGGTAGGATCTATATAGTAAAAATGGCTA  383

seq1  TCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCA  433

seq1  ACTCAATTCTTCAACGAATTGGAAGGAGCAATTTGCAAATTTGTCTGGAA  493
      ||||||||||||||||||||||| |||||||||||||||||  || ||||
seq2  ACTCAATTCTTCAACGAATTGGAGGGAGCAATTTGCAAATTCATCAGGAA  483

seq1  TAACAAAAAACCTAGGATAGCAAAAACT  521
      |||| |||||||||||||||||||||||
seq2  TAAC-AAAAACCTAGGATAGCAAAAACT  510

seq1: chr12_96421187_96422351
seq2: B6Ng01-331M06.g_67_1217 (reverse)

seq1  TCACAC-TGCACTGATCATAGTTTTAAAGACTAAATGGTTAGAAAACCCC  49
      |||||| |||||||||| ||| ||   |||||  |||| ||||||  |||
seq2  TCACACTTGCACTGATC-TAGGTT---AGACT--ATGG-TAGAAA--CCC  41

seq1  AGAATTGGTCTGTCTCCACTATCCTCTGCTCTCTCCAGCTCTCATTCTTT  99
      |||| | ||| ||||||||  ||||| ||||||| ||||||||| |||| 
seq2  AGAACT-GTC-GTCTCCACATTCCTC-GCTCTCT-CAGCTCTCA-TCTTA  86

seq1  CTCTTTCTG-AGTGTGTACTTTTATGTTTCTCAAATTTTAACTTTTCTTC  148
      ||||||||| |||||||||||||||||||||| |||||||||||||  ||
seq2  CTCTTTCTGAAGTGTGTACTTTTATGTTTCTC-AATTTTAACTTTTTCTC  135

seq1  CTTTTTTACTACTATATAATGACATGCAGACTA-TATTTCTCATAATGCT  197
      | |||||||||||| |  ||||||||||||||| ||||||||||||||||
seq2  C-TTTTTACTACTAAAATATGACATGCAGACTATTATTTCTCATAATGCT  184

seq1  TTGGGTTTAATTTATATTTACTGAAAGACTTGAGCAGGCTGACCTTAATT  247
      ||||||||||||||||||||||||||||||||||||||||||| |||| |
seq2  TTGGGTTTAATTTATATTTACTGAAAGACTTGAGCAGGCTGACTTTAA-T  233

seq1  TTTGCATCCAGTTTACCCACTGAGCCCATTCGTCAGATCTTTTCTTAGTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATCCAGTTTACCCACTGAGCCCATTCGTCAGATCTTTTCTTAGTC  283

seq1  TGATATTCAATGAGACTAAGAAGTCAACATAAAGATGCTTGTACCAGCTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTCAATGAGACTAAGAAGTCAACATAAAGATGCTTGTACCAGCTT  333

seq1  GCTGCCTAATTTCCCTGGTCCTGTGAGGTCTAATGAGCAACTCAACAGAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTAATTTCCCTGGTCCTGTGAGGTCTAATGAGCAACTCAACAGAA  383

seq1  CACTGAATCTCCTCCTTTCTGCCCCAGGGCTGCAACTGCTTAGAGTAACA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAATCTCCTCCTTTCTGCCCCAGGGCTGCAACTGCTTAGAGTAACA  433

seq1  GCAGGATAGGTAAACGTATACATTAAATCAAAACCTGAATGTTTATACAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGATAGGTAAACGTATACATTAAATCAAAACCTGAATGTTTATACAG  483

seq1  AGAAATGTGGGTCACTTTATATGACTCTTTCACTTAAACCCACAATATAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGTGGGTCACTTTATATGACTCTTTCACTTAAACCCACAATATAT  533

seq1  GGTAATTGAAGCTTTTTAAAAGAAAAATATACTTTGCACATGGTTCTATG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATTGAAGCTTTTTAAAAGAAAAATATACTTTGCACATGGTTCTATG  583

seq1  AAAGAAGTCTATGTACAGTCAAATAAACACCAGCACTGCTCCAACTAAGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGTCTATGTACAGTCAAATAAACACCAGCACTGCTCCAACTAAGC  633

seq1  ACTTTGGCCGTCTTATCACAACAGATTCCTCTCAGATACACTGTGTACTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGCCGTCTTATCACAACAGATTCCTCTCAGATACACTGTGTACTA  683

seq1  CAGGGAAAAGAACAGAATTTAAGCTCGAATCTTGGCTGAGAAGCTCACAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAAAGAACAGAATTTAAGCTCGAATCTTGGCTGAGAAGCTCACAC  733

seq1  TCCTTATGACCTTGAGGGAGTTATTTGTTATCGCATAGTTTCACCTCTCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTATGACCTTGAGGGAGTTATTTGTTATCGCATAGTTTCACCTCTCA  783

seq1  GTCAGGAATTATAGCTTATAACTTGGGGTAAGAGATAATGATAGCTGCAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGAATTATAGCTTATAACTTGGGGTAAGAGATAATGATAGCTGCAG  833

seq1  CTAGAAATGGCAGATCTTCCATAATGATAGCTACTATTGTTATCCTCAAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAATGGCAGATCTTCCATAATGATAGCTACTATTGTTATCCTCAAG  883

seq1  TCTCTAATAGGGAGAAAAGAGCAATAAAAATGGGGAAAATGTTCTACTCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAATAGGGAGAAAAGAGCAATAAAAATGGGGAAAATGTTCTACTCA  933

seq1  GAAAGTAGCTGAAATCATGTTACTAAGTTAGGTGAGAGAAGATTAGGCAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTAGCTGAAATCATGTTACTAAGTTAGGTGAGAGAAGATTAGGCAT  983

seq1  TATTTAATCATTCTTACATCATTTTGTCTAGTCAGCAATGTAAGTGAAAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAATCATTCTTACATCATTTTGTCTAGTCAGCAATGTAAGTGAAAG  1033

seq1  AGTATAAGAACGGATATTATTTGGCAAAATGTATTCAATATTTTAAGAGG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAAGAACGGATATTATTTGGCAAAATGTATTCAATATTTTAAGAGG  1083

seq1  TTTTAAATATCTGTAGATGTTTCCTTTATACAGCTTTTATACACTCTCAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATATCTGTAGATGTTTCCTTTATACAGCTTTTATACACTCTCAA  1133

seq1  AAAAAAAAAAGAGAATTC  1165
      ||||||||||||||||||
seq2  AAAAAAAAAAGAGAATTC  1151