BAC Information

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BAC

Clone NameB6Ng01-332B23
Chromosome1 (Build37)
Map Location 17,915,460 - 17,968,563
singlet/doubletdoublet
Overlap geneLOC665564
Upstream geneJph1, Gdap1, LOC383495, Rbm6-ps1, Ppia-ps1_125.1, Pi15, Crispld1
Downstream geneLOC100040126, Crisp4, EG574082, EG654460, Defb17, LOC383499
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332B23.bB6Ng01-332B23.g
ACCGA118316GA118317
length1,1041,095
definitionB6Ng01-332B23.b B6Ng01-332B23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,967,455 - 17,968,563)(17,915,460 - 17,916,565)
sequence
gaattctctcactgttcattgattaaagtctccacagtagctaattaagg
aacaataaaccaagagctgcagagttggcccaacatttaagactacttgt
tgttcttgcagtgtccaggatcagttcacattcatgtgacttaacaggct
tctgtaactcagattctaaaggatgtattggtctcttatggccactgagg
gtactgcatgcaaaaaactcacacctgagtcacatggtaaagtgagtatg
ttcatataacaccaacgggtggcctggaaaagtcaccatcgaatgaggca
ggggtcagtggcatggaggcaactctgagacttccaagggcagtggaggt
ggagtgatagggaagtaggcagtaacagggccaagggtataatctaatct
ataccaaagaaatattctttagtatagctcatcagaaatcagtctaaaat
tctgctgtggctatcttaagtctgtcagaagtttttagatcctgtgagct
gggtttatcctgatgttttcatgcctgttatgattttgaggaagtcacag
gagcatcatgtgctagaggatttgtctgaaaacatggctctcttgggcat
tgtgacaattgcaaagatcctagagtttaactccatccattatttctaac
tcgcctctttggatttgcctactcaagggaatggccacttcccctgatga
tgtggcatccccagagagctttttagataatcctcatataagtagccact
gtagatttgattgaatcaggaagtatattttagaaggctttaaaggtatg
gttgtgaacattaacctttactaatgaaactttttttttcctgcagttaa
ttttctgggatatatatgcattctaggatgcaaataccacatcaaaaaat
tgagaaatgttgtttcttatggttcttaatattgcacctagagactggaa
tagtgagtgcatatgcatgccctgagatgatatcatatcacactattttt
tttttttttactgtatagatatactataggttgggcaaattctcactgta
tcactaagagcctgggatggtaaaggagagaagagactgtagcaaggaat
ccag

gaattcaggggagccaaaatcaatggtgagaaattgtgaccaggtgtctt
catttcctggttcctcaagtattgtgtagtcagctttctctgacaaaaaa
gggggacatctgtgaaaatccaccagcatttgtccatttcagtacatcat
gtaagaaatcttagttctttacttaagaacagtatcagcagatgaaataa
actatttgaaaattacaaataaaggaaaaaaatataatgaccctgagagt
aagaaattcatggggatatttttagtgctatacttttctatgtatcctca
tttatattactttcaacaatttttattaattttatactttctgtagataa
aaaaataacatgacttttgatctagggagaataatacaacagagactgag
atacacatcagctagactgcaaagatttcagagctagatgcatactttct
atacattaaacctagaaacacactgaccagcacaaggcggagaaaagagc
aacaatagaattgagaacaggattgctactttccaaccttatgttgtgac
aaagtaaaaaacacataacaaaaaagccacagcatctaacctaacagagt
agaagaagaaagctctcctggaaaggcacttttcctagtgagatgctcat
ggagttattcactaatatattcattcctaaaattactttgctccaggagt
ttcatacttaagatacaaaacaccaggaagtttttttgaccattgtaaaa
ataaaatggtctcataaatgtcaaaatattaaaagtagcaggtctttctg
tagtgttcttatatttgataataacagaagacagtgttcataggactttt
taataggcttaaacataatctctttgaataaaaccacacataaattcctt
tatatttcttttgtacagtgaaatttttaaatagggtcccaatttaagcc
ttaacaaaagagatcaaagctaagatattcaagttattactcattaagtt
ctaaagaaacactcatgtcaaatttagattagaagatacctctcagcaga
ttcagatgaataaattatggggtatcaaaaaatggaatgtgattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_17967455_17968563
seq2: B6Ng01-332B23.b_43_1146 (reverse)

seq1  CTGGATCCCTTGCTACAGTCTCTTCTCT-CTTTACCATCCAGGGCTCTTA  49
      |||||| ||||||||||||||||||||| |||||||||||  ||||||||
seq2  CTGGATTCCTTGCTACAGTCTCTTCTCTCCTTTACCATCCCAGGCTCTTA  50

seq1  GTTGATTAACAGGTGAGAATTTTGCCCCAACCTATAGTATATCTAATAAC  99
      | ||||  ||| ||||||||||   ||||||||||||||||||||   ||
seq2  G-TGAT--ACA-GTGAGAATTT--GCCCAACCTATAGTATATCTA--TAC  92

seq1  AGT--AAAAAAAAAAAATAGTGTGATATGATATCATCTCAGGGCATGCAT  147
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAAAAAAAAAAATAGTGTGATATGATATCATCTCAGGGCATGCAT  142

seq1  ATGCACTCACTATTCCAGTCTCTAGGTGCAATATTAAGAACCATAAGAAA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTCACTATTCCAGTCTCTAGGTGCAATATTAAGAACCATAAGAAA  192

seq1  CAACATTTCTCAATTTTTTGATGTGGTATTTGCATCCTAGAATGCATATA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTTCTCAATTTTTTGATGTGGTATTTGCATCCTAGAATGCATATA  242

seq1  TATCCCAGAAAATTAACTGCAGGAAAAAAAAAGTTTCATTAGTAAAGGTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCAGAAAATTAACTGCAGGAAAAAAAAAGTTTCATTAGTAAAGGTT  292

seq1  AATGTTCACAACCATACCTTTAAAGCCTTCTAAAATATACTTCCTGATTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCACAACCATACCTTTAAAGCCTTCTAAAATATACTTCCTGATTC  342

seq1  AATCAAATCTACAGTGGCTACTTATATGAGGATTATCTAAAAAGCTCTCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAATCTACAGTGGCTACTTATATGAGGATTATCTAAAAAGCTCTCT  392

seq1  GGGGATGCCACATCATCAGGGGAAGTGGCCATTCCCTTGAGTAGGCAAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATGCCACATCATCAGGGGAAGTGGCCATTCCCTTGAGTAGGCAAAT  442

seq1  CCAAAGAGGCGAGTTAGAAATAATGGATGGAGTTAAACTCTAGGATCTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAGGCGAGTTAGAAATAATGGATGGAGTTAAACTCTAGGATCTTT  492

seq1  GCAATTGTCACAATGCCCAAGAGAGCCATGTTTTCAGACAAATCCTCTAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTGTCACAATGCCCAAGAGAGCCATGTTTTCAGACAAATCCTCTAG  542

seq1  CACATGATGCTCCTGTGACTTCCTCAAAATCATAACAGGCATGAAAACAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGATGCTCCTGTGACTTCCTCAAAATCATAACAGGCATGAAAACAT  592

seq1  CAGGATAAACCCAGCTCACAGGATCTAAAAACTTCTGACAGACTTAAGAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATAAACCCAGCTCACAGGATCTAAAAACTTCTGACAGACTTAAGAT  642

seq1  AGCCACAGCAGAATTTTAGACTGATTTCTGATGAGCTATACTAAAGAATA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAGCAGAATTTTAGACTGATTTCTGATGAGCTATACTAAAGAATA  692

seq1  TTTCTTTGGTATAGATTAGATTATACCCTTGGCCCTGTTACTGCCTACTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGGTATAGATTAGATTATACCCTTGGCCCTGTTACTGCCTACTT  742

seq1  CCCTATCACTCCACCTCCACTGCCCTTGGAAGTCTCAGAGTTGCCTCCAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATCACTCCACCTCCACTGCCCTTGGAAGTCTCAGAGTTGCCTCCAT  792

seq1  GCCACTGACCCCTGCCTCATTCGATGGTGACTTTTCCAGGCCACCCGTTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGACCCCTGCCTCATTCGATGGTGACTTTTCCAGGCCACCCGTTG  842

seq1  GTGTTATATGAACATACTCACTTTACCATGTGACTCAGGTGTGAGTTTTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTATATGAACATACTCACTTTACCATGTGACTCAGGTGTGAGTTTTT  892

seq1  TGCATGCAGTACCCTCAGTGGCCATAAGAGACCAATACATCCTTTAGAAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCAGTACCCTCAGTGGCCATAAGAGACCAATACATCCTTTAGAAT  942

seq1  CTGAGTTACAGAAGCCTGTTAAGTCACATGAATGTGAACTGATCCTGGAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTACAGAAGCCTGTTAAGTCACATGAATGTGAACTGATCCTGGAC  992

seq1  ACTGCAAGAACAACAAGTAGTCTTAAATGTTGGGCCAACTCTGCAGCTCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAAGAACAACAAGTAGTCTTAAATGTTGGGCCAACTCTGCAGCTCT  1042

seq1  TGGTTTATTGTTCCTTAATTAGCTACTGTGGAGACTTTAATCAATGAACA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTATTGTTCCTTAATTAGCTACTGTGGAGACTTTAATCAATGAACA  1092

seq1  GTGAGAGAATTC  1109
      ||||||||||||
seq2  GTGAGAGAATTC  1104


seq1: chr1_17915460_17916565
seq2: B6Ng01-332B23.g_64_1158

seq1  GAATTCAGGGGAGCCAAAATCAATGGTGAGAAATTGTGACCAGGTGTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGGAGCCAAAATCAATGGTGAGAAATTGTGACCAGGTGTCTT  50

seq1  CATTTCCTGGTTCCTCAAGTATTGTGTAGTCAGCTTTCTCTGACAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCTGGTTCCTCAAGTATTGTGTAGTCAGCTTTCTCTGACAAAAAA  100

seq1  GGGGGACATCTGTGAAAATCCACCAGCATTTGTCCATTTCAGTACATCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGACATCTGTGAAAATCCACCAGCATTTGTCCATTTCAGTACATCAT  150

seq1  GTAAGAAATCTTAGTTCTTTACTTAAGAACAGTATCAGCAGATGAAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAATCTTAGTTCTTTACTTAAGAACAGTATCAGCAGATGAAATAA  200

seq1  ACTATTTGAAAATTACAAATAAAGGAAAAAAATATAATGACCCTGAGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTGAAAATTACAAATAAAGGAAAAAAATATAATGACCCTGAGAGT  250

seq1  AAGAAATTCATGGGGATATTTTTAGTGCTATACTTTTCTATGTATCCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATTCATGGGGATATTTTTAGTGCTATACTTTTCTATGTATCCTCA  300

seq1  TTTATATTACTTTCAACAATTTTTATTAATTTTATACTTTCTGTAGATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTACTTTCAACAATTTTTATTAATTTTATACTTTCTGTAGATAA  350

seq1  AAAAATAACATGACTTTTGATCTAGGGAGAATAATACAACAGAGACTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAACATGACTTTTGATCTAGGGAGAATAATACAACAGAGACTGAG  400

seq1  ATACACATCAGCTAGACTGCAAAGATTTCAGAGCTAGATGCATACTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACATCAGCTAGACTGCAAAGATTTCAGAGCTAGATGCATACTTTCT  450

seq1  ATACATTAAACCTAGAAACACACTGACCAGCACAAGGCGGAGAAAAGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTAAACCTAGAAACACACTGACCAGCACAAGGCGGAGAAAAGAGC  500

seq1  AACAATAGAATTGAGAACAGGATTGCTACTTTCCAACCTTATGTTGTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAGAATTGAGAACAGGATTGCTACTTTCCAACCTTATGTTGTGAC  550

seq1  AAAGTAAAAAACACATAACAAAAAAGCCACAGCATCTAACCTAACAGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAAAAACACATAACAAAAAAGCCACAGCATCTAACCTAACAGAGT  600

seq1  AGAAGAAGAAAGCTCTCCTGGAAAGGCACTTTTCCTAGTGAGATGCTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAGAAAGCTCTCCTGGAAAGGCACTTTTCCTAGTGAGATGCTCAT  650

seq1  GGAGTTATTCACTAATATATTCATTCCTAAAATTACTTTGCTCCAGGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTATTCACTAATATATTCATTCCTAAAATTACTTTGCTCCAGGAGT  700

seq1  TTCATACTTAAGATACAAAACACCAGGAAGTTTTTTTGACCATTGTAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACTTAAGATACAAAACACCAGGAAGTTTTTTTGACCATTGTAAAA  750

seq1  ATAAAATGGTCTCATAAATGTCAAAATATTAAAAGTAGCAGGTCTTTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATGGTCTCATAAATGTCAAAATATTAAAAGTAGCAGGTCTTTCTG  800

seq1  TAGTGTTCTTATATTTGATAATAACAGAAGACAGTGTTCATAGGACTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTCTTATATTTGATAATAACAGAAGACAGTGTTCATAGGACTTTT  850

seq1  TAATAGGCTTAAACATAATCTCTTTGAATAAAACCACACATAAATTCCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGGCTTAAACATAATCTCTTTGAATAAAACCACACATAAATTCCTT  900

seq1  TATATTTCTTTTGTACAGTGAAATTTTTAAATAGGGTCCCAATTTAAGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTCTTTTGTACAGTGAAATTTTTAAATAGGGTCCCAATTTAAGCC  950

seq1  TTAACAAAAGAAGATCAAAGCTAAGATATTCAAGTTATTACTCATTAAGT  1000
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAAAG-AGATCAAAGCTAAGATATTCAAGTTATTACTCATTAAGT  999

seq1  TCTAAAGAAACAACCTCATGTCAAAATTTAGAATTAAGAAGATACCTCTC  1050
      ||||||||||||  |||||||| |||||||||  | ||||||||||||||
seq2  TCTAAAGAAACA--CTCATGTC-AAATTTAGA--TTAGAAGATACCTCTC  1044

seq1  AGCAGATTCAGGAATGAATAAATTATGGGGTATCCAAAAAAAATGGAATG  1100
      |||||||||||  |||||||||||||||||||||   |||||||||||||
seq2  AGCAGATTCAG--ATGAATAAATTATGGGGTATC---AAAAAATGGAATG  1089

seq1  TGATTT  1106
      ||||||
seq2  TGATTT  1095


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