BAC Information

Click to search

BAC

Clone NameB6Ng01-332G12
Chromosome1 (Build37)
Map Location 111,315,921 - 111,317,082
singlet/doubletsinglet
Overlap genenone
Upstream geneEG626474
Downstream geneEG666508, Cdh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332G12.bB6Ng01-332G12.g
ACCGA118519GA118520
length1,1801,134
definitionB6Ng01-332G12.b B6Ng01-332G12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaatagaggaatctcaaatggcctagaaacacttaataaaatg
ttcaatgtcaactatcagggaaatgtaaatcaacataactttgagatttc
attttatatctgtcataatggataagatgaatcacacaagtaaggatgtg
gaacaaagggatcatacctccattgctagtaggagttcaaacttgtaaag
acattatacaaatcaaaaactgggaatcattctacctcatgaaacaaatt
taccactcttgtgcatatatccaaagggtgctctattctatcacagagaa
atatgttcaattatatattgattttagctttattcataatagccagaaac
tttagtaacatctgagatgtctttcaagtgaaaagttggtaaagaaatta
ggctacatatatacaatggagtattattctatagtctaagaaatgacaca
aaatatgcaggcaaatggaatgcactagaaaaaataatgttgagtgaggt
aacccaaactgaggaaaacaatttggtatttattcacttgtaagtgaata
ttagctgttaggtaataataatcaagctataatccatagacccagagatg
ttaggttggaatgacaactacagtgggaaaacatgggtctttcttaaaag
tagaatcagtatagacttagcaggatgacttgggacagtttgggaaggaa
gggaagaaatcagatggaggggaatgttggagaaaatgcattgagagaca
gagagacagttgcaattggggatcatgttggggtcagtgtggaaacctag
tgcagcagaaacttcctggaatctaaaaagacatcactagtcaacatccc
tggtaatgtagcttagaaaatctgaattgtccttcttttgtagccataga
aggcttccagtgttgtggtccactcaatatcctttaaacaacttagctga
tgctaagatagtatctcttctgaagcttgtcagcttgtttccaatgctaa
gaacaacattccacacagaatgttaacctggtattcttcacccttacttt
tctaatctctttggcagaataaagttatcttcaagctataaggataaact
gggataccaatttagccttaaacctcaacctacccttctgtctaacttct
caaaagatgaaccgggcgggaaatagtggt

gaattcatttaaagtaaagaaaactttacaaaacatcagtctaagtgcca
aacatagaggaataaggcctttttggatacttatgtgatgaatcttagtc
ccctgttcccaaccaagaatgaattagattcagtgatcagaaatgctctt
tatggactctatgtccataatattttaaatagagaacaatgttcagaaaa
atgcaaatcagaaaatgcttataccagtgcaggtagactaaggcaaatgt
gtctctagctttaaaagtatgattacatctttttcttttctttttaacat
ttgcaacatcagtgttcataaaggtgtgatattatttatttctgtctgta
agttataaaaacaagttttgtttgtttaagtttacaaaatcaagttataa
agatacttataaatacagatatactgaaatttatgatattatcacaatgt
cgctgagcaacataatatagtagaaaatacaatgcaagaatgaattagtt
taaacttatataaataatatttaagtaaacaattttacttgagatttggc
ttcttatatcactaggttgttttaatcactaacaaatatcctaagaaatt
taatgagtaaataataattttatgtattgtataaatagagaacagtgagg
gactcacatagttatgaacatcttgcctatttattgaaactccttccttc
ccagggcacagtctcttagtatgatatatcagtgcaccataaatgtatta
aatgggaataaaactacaaataatgagtaacacatgatcttttatactaa
gaaatatttaagttggtaacaatatcaggagatttaaattgtactaatag
ttcagaatttaatttccaacatgttattttctttgttaaactctattatg
aactacattctttagattattgttgtttatctattgtaagctcaagcatt
tatttttcatgtactaactttggaaataatatcaagttttatttaccata
ttacttttatttagtcttttatttagctaaaggacatctattttttagta
taatgaaaacacaaaatatatggcataaggagctcatgcattaataatgc
tttaaatcatatttttgagtagatgggctagcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_111315921_111317082
seq2: B6Ng01-332G12.g_66_1199

seq1  GAATTCATTTAAAGTAAAGAAAACTTTACAAAACATCAGTCTAAGTGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTAAAGTAAAGAAAACTTTACAAAACATCAGTCTAAGTGCCA  50

seq1  AACATAGAGGAATAAGGCCTTTTTGGATACTTATGTGATGAATCTTAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAGAGGAATAAGGCCTTTTTGGATACTTATGTGATGAATCTTAGTC  100

seq1  CCCTGTTCCCAACCAAGAATGAATTAGATTCAGTGATCAGAAATGCTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTCCCAACCAAGAATGAATTAGATTCAGTGATCAGAAATGCTCTT  150

seq1  TATGGACTCTATGTCCATAATATTTTAAATAGAGAACAATGTTCAGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGACTCTATGTCCATAATATTTTAAATAGAGAACAATGTTCAGAAAA  200

seq1  ATGCAAATCAGAAAATGCTTATACCAGTGCAGGTAGACTAAGGCAAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAATCAGAAAATGCTTATACCAGTGCAGGTAGACTAAGGCAAATGT  250

seq1  GTCTCTAGCTTTAAAAGTATGATTACATCTTTTTCTTTTCTTTTTAACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTAGCTTTAAAAGTATGATTACATCTTTTTCTTTTCTTTTTAACAT  300

seq1  TTGCAACATCAGTGTTCATAAAGGTGTGATATTATTTATTTCTGTCTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAACATCAGTGTTCATAAAGGTGTGATATTATTTATTTCTGTCTGTA  350

seq1  AGTTATAAAAACAAGTTTTGTTTGTTTAAGTTTACAAAATCAAGTTATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATAAAAACAAGTTTTGTTTGTTTAAGTTTACAAAATCAAGTTATAA  400

seq1  AGATACTTATAAATACAGATATACTGAAATTTATGATATTATCACAATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACTTATAAATACAGATATACTGAAATTTATGATATTATCACAATGT  450

seq1  CGCTGAGCAACATAATATAGTAGAAAATACAATGCAAGAATGAATTAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGAGCAACATAATATAGTAGAAAATACAATGCAAGAATGAATTAGTT  500

seq1  TAAACTTATATAAATAATATTTAAGTAAACAATTTTACTTGAGATTTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTATATAAATAATATTTAAGTAAACAATTTTACTTGAGATTTGGC  550

seq1  TTCTTATATCACTAGGTTGTTTTAATCACTAACAAATATCCTAAGAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATATCACTAGGTTGTTTTAATCACTAACAAATATCCTAAGAAATT  600

seq1  TAATGAGTAAATAATAATTTTATGTATTGTATAAATAGAGAACAGTGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGTAAATAATAATTTTATGTATTGTATAAATAGAGAACAGTGAGG  650

seq1  GACTCACATAGTTATGAACATCTTGCCTATTTATTGAAACTCCTTCCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCACATAGTTATGAACATCTTGCCTATTTATTGAAACTCCTTCCTTC  700

seq1  CCAGGGCACAGTCTCTTAGTATGATATATCAGTGCACCATAAATGTATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCACAGTCTCTTAGTATGATATATCAGTGCACCATAAATGTATTA  750

seq1  AATGGGAATAAAACTACAAATAATGAGTAACACATGATCTTTTATACTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAATAAAACTACAAATAATGAGTAACACATGATCTTTTATACTAA  800

seq1  GAAATATTTAAGTTGGTAACAATATCAGGAGATTTAAATTGTACTAATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATTTAAGTTGGTAACAATATCAGGAGATTTAAATTGTACTAATAG  850

seq1  TTCAGAATTTAATTTCCAACATGTTATTTTCTTTGTTAAACTCTATTATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAATTTAATTTCCAACATGTTATTTTCTTTGTTAAACTCTATTATG  900

seq1  AACTACATTCTTTAGATTATTGTTGTTTATCTATTGTAAGCTCAAAGCAT  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AACTACATTCTTTAGATTATTGTTGTTTATCTATTGTAAGCTC-AAGCAT  949

seq1  TTATTTTTCATGTACTAAACTTTGGAAATAATTATCAAAGTTTTATTTAC  1000
      |||||||||||||||| |||||||||||||| |||| |||||||||||||
seq2  TTATTTTTCATGTACT-AACTTTGGAAATAA-TATC-AAGTTTTATTTAC  996

seq1  CATATTACTTTTATTTAGTCTTTTATTTAGCTAAAGGACATCCTATTTTT  1050
      ||||||||||||||||||||||||||||||||||||||||| ||| ||||
seq2  CATATTACTTTTATTTAGTCTTTTATTTAGCTAAAGGACAT-CTA-TTTT  1044

seq1  TTAGTATAAATGAAAAACAACCAAAAATTAATTATGGCATTAAAAGGAGC  1100
      ||||||| ||||||||     || ||| ||  ||||||||   |||||||
seq2  TTAGTAT-AATGAAAA-----CACAAAATA--TATGGCAT---AAGGAGC  1083

seq1  TTCATGGCATTTAATAATGCCTTTTAAAATCAATAATTTTTTAAATTAGA  1150
       |||| ||| ||||||||||  ||||     ||| || ||||  | ||| 
seq2  -TCAT-GCA-TTAATAATGC--TTTA-----AATCATATTTTTGAGTAG-  1122

seq1  ATGGGCTAGCTA  1162
      ||||||||||||
seq2  ATGGGCTAGCTA  1134


| Home | SequenceCutter | Blast | Download |