BAC Information

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BAC

Clone NameB6Ng01-333J20
Chromosome1 (Build37)
Map Location 154,233,955 - 154,235,134
singlet/doubletsinglet
Overlap genenone
Upstream gene1200016B10Rik, 1190005F20Rik, Rnf2, Niban, Edem3, 1700025G04Rik, LOC668076, 5730449L18Rik
Downstream geneGlt25d2, Rgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2, Lamc2, Lamc1, EG667795, EG626058
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333J20.bB6Ng01-333J20.g
ACCGA119363GA119364
length1,1591,195
definitionB6Ng01-333J20.b B6Ng01-333J20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcagcccttcataaacccgtgctctctagcttgagaaatgaag
gattcttaacccgtctttgccttcaattcctgggagcagaaaaagacccc
attcaatgccctgctgtcgaagtttaaaattaaaacacagttgtaaagca
agtccatctttcaagattagaaaaaaacatgaagtgttgaacgggtactg
agaactaacgtaaacaaatgacttaaaaagccaaagatgtgacccttcag
actgatgggtaggacatggcaagtgggtttggatttaccctgagtaagaa
aggagccagtggaggttcctggtattaagaggagtggttacaaagccact
atattaaccaagaccaaaaaggcttccaaaattaaaaaagtaccaggcaa
aagaaaacttgtgattcaaaacgcagtagattaagaatcttgtgttgaac
caggcagtggtggcccacgcctttaatcccagcacttgggaggcagaggc
aggtggatttctgaattcgaggccagcctggtctacagagagagttccag
aacagccagggcttcacagagaaatcctgtctcgaaaaaccaaaaaaaaa
aaaaaaaaaaaaaaaaaaagaatcttgtgttgaaacaaaactttgatgag
accattacatccatcagcaatgaaatacaacaaaccatatttttaatgga
tggaaatctcaagggtcaaatctcaaaaatgaaaattttttttaaaatcc
aaataggtattctgtagttcaagattacagttttggaaataaagatttcc
agtgggtgatttttgacaaccaaaatggaatttggggggaagagcaggtg
aagttgcagatagatcaagagaaatcactacagatgaacaaagagtgaga
tgttattttcataagtgtgagggtggcagggggcaaagtgccaggcttag
tggtgaatgatcatgatctcagtattcagaggctgaaatgggaggattgt
gatgttgagcccagctgagtctacagagtgagtctagatcagctgactat
agatcaaactgtcacagttaacgacacgcgaagaatgaacactgcttagg
atggctcatgtagtgacctatagggaagagtgaaacctgaagaaatgatg
caatttttt
gaattccatacattattttcatttcaaatcaaatttcaggacacaacaaa
atatgtagtcaggactgctttagtcatatatctgaaggagaaataacaat
gatattttcaaatataaaaccttgaaatctaaggtagtttgttttgacct
atttggaattagctcttccatcacttacacagagcagagtatttgaaaaa
tccttcaaataatatatgtaaatgtatgtctgttctacctagaaagttga
actaacatatacacgtatagggcctggatagatggctcagctcttcacag
gagttcttgcacaattgaccagagttcagatcccagtacccataaaacaa
gccaagcatcccacaagcgactccaaaagatctgcgaccttcttctggcc
tccatgcaagcacaagtgcataagacatatggtcatacatgcaaacagac
agacagacagatagacagacacacacacatctataaatagattattttaa
aagagagcttaagtagcttctaaaaccaaaactattttcaagttatattt
taaaataaaacctgagtgaggtaacccaatcacaaaagaagtcacttgat
aggcactcactgataagtgggtattagcccagaaacttagaatatccaag
atacaatttgcaaaacacgagaaaatcaagaagaaagaagaccaatgagt
ggatacttcattcctccttagaatagggaacaaaatacccatggaaggag
ttacagagacaaagtttgaagctaagatgaaaggatggaccatccagagg
ttgccccacctggggatccatcccataatcagccaccaaacgcagacact
attgcatatgccagcaagattttgcagacatgaccctgatatagctgtct
tgtgtgaggctatgccaatgcctggcaaatacagaagtggggatgctcac
tgtcatctataggatggaacacagggccccagtggagagctagaagaaag
tacccaagagctgaggggtctgcaaccctataggtggaacaacatatgac
taatcagtagcaccccgcccccccactcgagcttcatgtctctagctgca
tatgtagcagaagatgccttagttgcatcaaatgagaaagtcctgtcttg
caactttatattgcctcagttacaaggaatgtgccaggtcacaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_154233955_154235134
seq2: B6Ng01-333J20.b_52_1210

seq1  GAATTCTTCAGCCCTTCATAAACCCGTGCTCTCTAGCTTGAGAAATGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGCCCTTCATAAACCCGTGCTCTCTAGCTTGAGAAATGAAG  50

seq1  GATTCTTAACCCGTCTTTGCCTTCAATTCCTGGGAGCAGAAAAAGACCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTAACCCGTCTTTGCCTTCAATTCCTGGGAGCAGAAAAAGACCCC  100

seq1  ATTCAATGCCCTGCTGTCGAAGTTTAAAATTAAAACACAGTTGTAAAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATGCCCTGCTGTCGAAGTTTAAAATTAAAACACAGTTGTAAAGCA  150

seq1  AGTCCATCTTTCAAGATTAGAAAAAAACATGAAGTGTTGAACGGGTACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCATCTTTCAAGATTAGAAAAAAACATGAAGTGTTGAACGGGTACTG  200

seq1  AGAACTAACGTAAACAAATGACTTAAAAAGCCAAAGATGTGACCCTTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTAACGTAAACAAATGACTTAAAAAGCCAAAGATGTGACCCTTCAG  250

seq1  ACTGATGGGTAGGACATGGCAAGTGGGTTTGGATTTACCCTGAGTAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGGGTAGGACATGGCAAGTGGGTTTGGATTTACCCTGAGTAAGAA  300

seq1  AGGAGCCAGTGGAGGTTCCTGGTATTAAGAGGAGTGGTTACAAAGCCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCAGTGGAGGTTCCTGGTATTAAGAGGAGTGGTTACAAAGCCACT  350

seq1  ATATTAACCAAGACCAAAAAGGCTTCCAAAATTAAAAAAGTACCAGGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAACCAAGACCAAAAAGGCTTCCAAAATTAAAAAAGTACCAGGCAA  400

seq1  AAGAAAACTTGTGATTCAAAACGCAGTAGATTAAGAATCTTGTGTTGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAACTTGTGATTCAAAACGCAGTAGATTAAGAATCTTGTGTTGAAC  450

seq1  CAGGCAGTGGTGGCCCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGTGGTGGCCCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGC  500

seq1  AGGTGGATTTCTGAATTCGAGGCCAGCCTGGTCTACAGAGAGAGTTCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGATTTCTGAATTCGAGGCCAGCCTGGTCTACAGAGAGAGTTCCAG  550

seq1  AACAGCCAGGGCTTCACAGAGAAATCCTGTCTCGAAAAACCAAAAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCAGGGCTTCACAGAGAAATCCTGTCTCGAAAAACCAAAAAAAAA  600

seq1  AAAAAAAAAAAAAAAAAAAGAATCTTGTGTTGAAACAAAACTTTGATGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAGAATCTTGTGTTGAAACAAAACTTTGATGAG  650

seq1  ACCATTACATCCATCAGCAATGAAATACAACAAACCATATTTTTAATGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTACATCCATCAGCAATGAAATACAACAAACCATATTTTTAATGGA  700

seq1  TGGAAATCTCAAGGGTCAAATCTCAAAAATGAAAATTTTTTTTAAAATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATCTCAAGGGTCAAATCTCAAAAATGAAAATTTTTTTTAAAATCC  750

seq1  AAATAGGTATTCTGTAGTTCAAGATTACAGTTTTGGAAATAAAGATTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGGTATTCTGTAGTTCAAGATTACAGTTTTGGAAATAAAGATTTCC  800

seq1  AGTGGGTGATTTTTGACAACCAAAATGGAATTTGGGGGGAAGAGCAGGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTGATTTTTGACAACCAAAATGGAATTTGGGGGGAAGAGCAGGTG  850

seq1  AAGTTGCAGATAGATCAAGAGAAATCACTACAGATGAACAAAGAGTGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGCAGATAGATCAAGAGAAATCACTACAGATGAACAAAGAGTGAGA  900

seq1  TGTTATTTTCATAAGTGTGAGGGTGGCAGGGGGCAAAGTGCCAGGCTTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTTTCATAAGTGTGAGGGTGGCAGGGGGCAAAGTGCCAGGCTTAG  950

seq1  TGGTGAATGATCATGATCTCAGTATTCAGGAGGCTGAAATGGGAGGATTG  1000
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGGTGAATGATCATGATCTCAGTATTCA-GAGGCTGAAATGGGAGGATTG  999

seq1  TGATGTTGAGCCCAGCTGAGTCTACAGAGTGAGTTCTAGATCAGCCTGGA  1050
      ||||||||||||||||||||||||||||||||| |||||||||||   ||
seq2  TGATGTTGAGCCCAGCTGAGTCTACAGAGTGAG-TCTAGATCAGC--TGA  1046

seq1  CTATAGATCAAAACCTGTCACAGTAAACGAACACGCAGAGAATGAACAAC  1100
      ||||||||||||  |||||||||| |||| ||||||  ||||||||||  
seq2  CTATAGATCAAA--CTGTCACAGTTAACG-ACACGCGAAGAATGAACACT  1093

seq1  GCCTTAAGGAGTTGCCCCATGTTAGTGAACTAATAGGAGAAGGAGGTAGA  1150
      ||  | ||||  || | |||| |||||| || ||||| ||||     || 
seq2  GC--TTAGGA--TGGCTCATG-TAGTGACCT-ATAGG-GAAG-----AGT  1131

seq1  AAACACTGAAGAAATGATGGCCAATTTTTT  1180
       ||  ||||||||||||||  |||||||||
seq2  GAAACCTGAAGAAATGATG--CAATTTTTT  1159