BAC Information

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BAC

Clone NameB6Ng01-333P12
Chromosome1 (Build37)
Map Location 7,106,128 - 7,240,913
singlet/doubletdoublet
Overlap genePcmtd1, LOC545302
Upstream gene4732440D04Rik, Rb1cc1, EG620393, LOC100039302, LOC664946, St18, LOC665015, LOC665027, LOC100039347, LOC435608
Downstream geneLOC665063, LOC665069, LOC100039408
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333P12.bB6Ng01-333P12.g
ACCGA119591GA119592
length1,2011,131
definitionB6Ng01-333P12.b B6Ng01-333P12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,106,128 - 7,107,328)(7,239,776 - 7,240,913)
sequence
gaattcttcacttaatattttagaccatcattgatgttaggtaacaacaa
atcatgggaaaagaagtacccacaacagataaaggaagatgtgcatttcc
caggtttcatggagccttttggttcaggtctgatcatctgcctcttacta
gaacatggagaaaggatcttctgcatgtctagttgccctttcatccacca
ccttttgttttcctaatgcattttccatctcctgaagtgctggggtccag
gccagttactgtagagctgtatgcagatggatctatcctgcgaacatttt
gcacatggaattatcttttccttgttaaaaatctcctgattagctcattg
ttgcctttagttttgttgttgttgttgttgttgttgtttattagatgtga
atatcctgggttttgaggtagtttgagaactcatgtcatatgtaaaaatt
ctgatttgtttggtttttcagtagaatgtccataaatttggggggaccat
tgaaaagagtctgtgcccaaaaagtgaggaaattgctggtctacagtgaa
aaattgttaaggtgccagaaagtgccagctgtagataatttctgaaaagt
cttattcttgtgattgagcacttcagccagcaatcccttcaccaagtatg
cctttaaagaagctgccttcagtttcactttttccaggacccattttgtg
tacagcactctatcctttaatgtgtgctttctctcttaaaggtgaacata
ctgatggccttccttcttcattggcttattgtaatgtttagtaataaaac
actgtgaaaggtaaatagtggtagctgtttatttattgttcctcgcctca
actctttctaaccaagaatgaactgtggggctgaagatgttcagcatact
acagatgacagcactggcttctccgaggattttggattccatagaggcta
actgccatctgtaactccaggtccacgccctgcatacacagacagactca
gacacactatacacatacaataaaaaataaaatttttgttgttgttgtgt
ggaaaaaattgttaataaggttttgtagtaaattacaacaactttagtgg
gttggttaaggattcattttgaacatgatggaattttcctgtagggtcag
tttctctcagtgtggcacatatgcgaaggaaataattttccatctgagta
a

gaattctatatcctttgttctttcttatatgggataacattaaatttgta
agttaggcacagtaagggataaaaacaatgataattagaacaattatgtg
atcttgattaattgttttattttgaatctgttcttcaactttctcaaaat
gttttctcatgttgttttcttcccagcatgcaatgtctatgtgatgagct
ggacaggattggcataagactgctatttagtggttccttgcatataatct
ttgaaatgctgcagaagtcacctggataaaaactgagataacagtgacta
aatcacaagaaattctgttgtggtgcagctatattgaacagtctagcctg
ttcagacttgcctgcaaattaaaatatatatcttgatatctaacattttc
agtgatttaggactgcagcagaccacagatagctggcagtgtagttggca
ggagactggtgaatcttttaactcttatttccatattcaaagtagatgct
gatgaggcatgaagtttcattccagccttgaatctggctctagagtttcc
tatgtgaattctagaatcttctgtaccctacaactgcatcatggccaaag
agacagagaaacaggaatctggggatgctattcctccacccccatggcaa
aagtcaactcagactatatcaagcctccgcaaagggataatatgcaacct
cactgaaggcaagaaaggagaagaggtgagaaaaacctcttagagtagac
tcctttcagggagtggagtaaggccagaaacctaaccattccatcattcc
cttctagagtgtgtgccagttttctatttcaggaggcaagaacttctaca
tagcatgattttttttcacactggaactccttagaagttgtgtggccaaa
atattttaatatggttttagattttttttttacttttatctattattaat
tccaacatcctactaagaaaccatttttaaacattcatactgaaaaaaga
ccttctgggaagtatatatatatacacactatcagtaggtgttcggtttc
atgattatcagtaagcattgctctgactcccattctcaccatgtagatcc
ttatattgcaggaatatacatgaaaggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_7106128_7107328
seq2: B6Ng01-333P12.b_47_1247

seq1  GAATTCTTCACTTAATATTTTAGACCATCATTGATGTTAGGTAACAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCACTTAATATTTTAGACCATCATTGATGTTAGGTAACAACAA  50

seq1  ATCATGGGAAAAGAAGTACCCACAACAGATAAAGGAAGATGTGCATTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGGAAAAGAAGTACCCACAACAGATAAAGGAAGATGTGCATTTCC  100

seq1  CAGGTTTCATGGAGCCTTTTGGTTCAGGTCTGATCATCTGCCTCTTACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTCATGGAGCCTTTTGGTTCAGGTCTGATCATCTGCCTCTTACTA  150

seq1  GAACATGGAGAAAGGATCTTCTGCATGTCTAGTTGCCCTTTCATCCACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGGAGAAAGGATCTTCTGCATGTCTAGTTGCCCTTTCATCCACCA  200

seq1  CCTTTTGTTTTCCTAATGCATTTTCCATCTCCTGAAGTGCTGGGGTCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGTTTTCCTAATGCATTTTCCATCTCCTGAAGTGCTGGGGTCCAG  250

seq1  GCCAGTTACTGTAGAGCTGTATGCAGATGGATCTATCCTGCGAACATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTTACTGTAGAGCTGTATGCAGATGGATCTATCCTGCGAACATTTT  300

seq1  GCACATGGAATTATCTTTTCCTTGTTAAAAATCTCCTGATTAGCTCATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGGAATTATCTTTTCCTTGTTAAAAATCTCCTGATTAGCTCATTG  350

seq1  TTGCCTTTAGTTTTGTTGTTGTTGTTGTTGTTGTTGTTTATTAGATGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTTAGTTTTGTTGTTGTTGTTGTTGTTGTTGTTTATTAGATGTGA  400

seq1  ATATCCTGGGTTTTGAGGTAGTTTGAGAACTCATGTCATATGTAAAAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTGGGTTTTGAGGTAGTTTGAGAACTCATGTCATATGTAAAAATT  450

seq1  CTGATTTGTTTGGTTTTTCAGTAGAATGTCCATAAATTTGGGGGGACCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTGTTTGGTTTTTCAGTAGAATGTCCATAAATTTGGGGGGACCAT  500

seq1  TGAAAAGAGTCTGTGCCCAAAAAGTGAGGAAATTGCTGGTCTACAGTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGAGTCTGTGCCCAAAAAGTGAGGAAATTGCTGGTCTACAGTGAA  550

seq1  AAATTGTTAAGGTGCCAGAAAGTGCCAGCTGTAGATAATTTCTGAAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTTAAGGTGCCAGAAAGTGCCAGCTGTAGATAATTTCTGAAAAGT  600

seq1  CTTATTCTTGTGATTGAGCACTTCAGCCAGCAATCCCTTCACCAAGTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCTTGTGATTGAGCACTTCAGCCAGCAATCCCTTCACCAAGTATG  650

seq1  CCTTTAAAGAAGCTGCCTTCAGTTTCACTTTTTCCAGGACCCATTTTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAAAGAAGCTGCCTTCAGTTTCACTTTTTCCAGGACCCATTTTGTG  700

seq1  TACAGCACTCTATCCTTTAATGTGTGCTTTCTCTCTTAAAGGTGAACATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCACTCTATCCTTTAATGTGTGCTTTCTCTCTTAAAGGTGAACATA  750

seq1  CTGATGGCCTTCCTTCTTCATTGGCTTATTGTAATGTTTAGTAATAAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGCCTTCCTTCTTCATTGGCTTATTGTAATGTTTAGTAATAAAAC  800

seq1  ACTGTGAAAGGTAAATAGTGGTAGCTGTTTATTTATTGTTCCTCGCCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGAAAGGTAAATAGTGGTAGCTGTTTATTTATTGTTCCTCGCCTCA  850

seq1  ACTCTTTCTAACCAAGAATGAACTGTGGGGCTGAAGATGTTCAGCATACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTCTAACCAAGAATGAACTGTGGGGCTGAAGATGTTCAGCATACT  900

seq1  ACAGATGACAGCACTGGCTTCTCCGAGGATTTTGGATTCCATAGAGGCTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGACAGCACTGGCTTCTCCGAGGATTTTGGATTCCATAGAGGCTA  950

seq1  ACTGCCATCTGTAACTCCAGGTCCACGCCCTGCATACACAGACAGACTCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCATCTGTAACTCCAGGTCCACGCCCTGCATACACAGACAGACTCA  1000

seq1  GACACACCTATACACATACAAATAAAAAATAAAATTTTTGTTGTTGTTGT  1050
      |||||| |||||||||||| ||||||||||||||||||||||||||||| 
seq2  GACACA-CTATACACATAC-AATAAAAAATAAAATTTTTGTTGTTGTTG-  1047

seq1  TGTTGAAAAAA-TGTT-ATAAGG-TTTGTAGTAAA-TACAACAAACTTTT  1096
      ||| ||||||| |||| |||||| ||||||||||| ||||||||   |||
seq2  TGTGGAAAAAATTGTTAATAAGGTTTTGTAGTAAATTACAACAA--CTTT  1095

seq1  AGTTGGTTGGTTAAG--ATCATTTTGAACATGATGGA--TTTCCTGTAGG  1142
      ||| |||||||||||   |||||||||||||||||||  |||||||||||
seq2  AGTGGGTTGGTTAAGGATTCATTTTGAACATGATGGAATTTTCCTGTAGG  1145

seq1  GTCAGTTTCCTCTTAAGTGTTGGAACTAATGCGAAGGAAATAATTTTTCC  1192
      |||||||| ||| | |||| ||| ||  ||||||||||||||| ||||||
seq2  GTCAGTTT-CTC-TCAGTG-TGGCACATATGCGAAGGAAATAA-TTTTCC  1191

seq1  ATCT-AGTAA  1201
      |||| |||||
seq2  ATCTGAGTAA  1201


seq1: chr1_7239776_7240913
seq2: B6Ng01-333P12.g_70_1200 (reverse)

seq1  TCCTCTTTTCATGTATATATACTGC-ATATAAGGATCTAACATGGTTGAG  49
      ||||| |||||||||||| | |||| |||||||||||| |||||| ||||
seq2  TCCTCCTTTCATGTATAT-TCCTGCAATATAAGGATCT-ACATGG-TGAG  47

seq1  AAATGGGGAGTCAGAGCAATGGCTTACTGAATAATCATGAAAACGGAACA  99
      ||   ||||||||||||||| |||||||| ||||||||| |||| |||||
seq2  AA--TGGGAGTCAGAGCAAT-GCTTACTG-ATAATCATG-AAACCGAACA  92

seq1  -CTACTGATAGTGGTGTATATTATATATACTTCCCAGAAGGTCTTTTTTC  148
       ||||||||||| ||||||| |||||||||||||||||||||||||||||
seq2  CCTACTGATAGT-GTGTATA-TATATATACTTCCCAGAAGGTCTTTTTTC  140

seq1  AGTATGAATGTTTAAAAATGGTTTCTTAGTAGGATGTTGGAATTAATAAT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGAATGTTTAAAAATGGTTTCTTAGTAGGATGTTGGAATTAATAAT  190

seq1  AGATAAAAGT-AAAAAAAAATCTAAAACCATATTAAAATATTTTGGCCAC  247
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAAGTAAAAAAAAAATCTAAAACCATATTAAAATATTTTGGCCAC  240

seq1  ACAACTTCTAAGGAGTTCCAGTGTGAAAAAAAATCATGCTATGTAGAAGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTCTAAGGAGTTCCAGTGTGAAAAAAAATCATGCTATGTAGAAGT  290

seq1  TCTTGCCTCCTGAAATAGAAAACTGGCACACACTCTAGAAGGGAATGATG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCTCCTGAAATAGAAAACTGGCACACACTCTAGAAGGGAATGATG  340

seq1  GAATGGTTAGGTTTCTGGCCTTACTCCACTCCCTGAAAGGAGTCTACTCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGTTAGGTTTCTGGCCTTACTCCACTCCCTGAAAGGAGTCTACTCT  390

seq1  AAGAGGTTTTTCTCACCTCTTCTCCTTTCTTGCCTTCAGTGAGGTTGCAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTTTTTCTCACCTCTTCTCCTTTCTTGCCTTCAGTGAGGTTGCAT  440

seq1  ATTATCCCTTTGCGGAGGCTTGATATAGTCTGAGTTGACTTTTGCCATGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCCCTTTGCGGAGGCTTGATATAGTCTGAGTTGACTTTTGCCATGG  490

seq1  GGGTGGAGGAATAGCATCCCCAGATTCCTGTTTCTCTGTCTCTTTGGCCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGAGGAATAGCATCCCCAGATTCCTGTTTCTCTGTCTCTTTGGCCA  540

seq1  TGATGCAGTTGTAGGGTACAGAAGATTCTAGAATTCACATAGGAAACTCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCAGTTGTAGGGTACAGAAGATTCTAGAATTCACATAGGAAACTCT  590

seq1  AGAGCCAGATTCAAGGCTGGAATGAAACTTCATGCCTCATCAGCATCTAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCAGATTCAAGGCTGGAATGAAACTTCATGCCTCATCAGCATCTAC  640

seq1  TTTGAATATGGAAATAAGAGTTAAAAGATTCACCAGTCTCCTGCCAACTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATATGGAAATAAGAGTTAAAAGATTCACCAGTCTCCTGCCAACTA  690

seq1  CACTGCCAGCTATCTGTGGTCTGCTGCAGTCCTAAATCACTGAAAATGTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCAGCTATCTGTGGTCTGCTGCAGTCCTAAATCACTGAAAATGTT  740

seq1  AGATATCAAGATATATATTTTAATTTGCAGGCAAGTCTGAACAGGCTAGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATCAAGATATATATTTTAATTTGCAGGCAAGTCTGAACAGGCTAGA  790

seq1  CTGTTCAATATAGCTGCACCACAACAGAATTTCTTGTGATTTAGTCACTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCAATATAGCTGCACCACAACAGAATTTCTTGTGATTTAGTCACTG  840

seq1  TTATCTCAGTTTTTATCCAGGTGACTTCTGCAGCATTTCAAAGATTATAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCAGTTTTTATCCAGGTGACTTCTGCAGCATTTCAAAGATTATAT  890

seq1  GCAAGGAACCACTAAATAGCAGTCTTATGCCAATCCTGTCCAGCTCATCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGAACCACTAAATAGCAGTCTTATGCCAATCCTGTCCAGCTCATCA  940

seq1  CATAGACATTGCATGCTGGGAAGAAAACAACATGAGAAAACATTTTGAGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGACATTGCATGCTGGGAAGAAAACAACATGAGAAAACATTTTGAGA  990

seq1  AAGTTGAAGAACAGATTCAAAATAAAACAATTAATCAAGATCACATAATT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGAAGAACAGATTCAAAATAAAACAATTAATCAAGATCACATAATT  1040

seq1  GTTCTAATTATCATTGTTTTTATCCCTTACTGTGCCTAACTTACAAATTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAATTATCATTGTTTTTATCCCTTACTGTGCCTAACTTACAAATTT  1090

seq1  AATGTTATCCCATATAAGAAAGAACAAAGGATATAGAATTC  1138
      |||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTATCCCATATAAGAAAGAACAAAGGATATAGAATTC  1131


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