BAC Information

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BAC

Clone NameB6Ng01-334A23
Chromosome1 (Build37)
Map Location 104,995,979 - 104,997,143
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041056, LOC100041067
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334A23.bB6Ng01-334A23.g
ACCGA119659GA119660
length1,1961,147
definitionB6Ng01-334A23.b B6Ng01-334A23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaccgaggaataccaaatgactgagaagcacctgaaaaaatgt
tcaacatccttaatcatcagagaaatgcaaatcaaaacagccctgagatt
ccatctcataccagtcagaatggctaagatcaaaaattcaggtgacagca
gatgctggcaaggatgtggtgaaagaggaacactcctccattgttggtgg
gattgcaagcttgtacaaccactctggaaatcagtctggcagttcctcag
aaaattggacatagtactaccagagaatccagcaatacctctcctgggca
tatatccagaagatgtcccaaccggtaagaaggacacatgctccactatg
ttcatagcagccttatttataatagccagaagctggaaagaacccagatg
cccctcaacagaggaatggatacaaaaaatgtggtacatttacacaatgg
agtgctactcagctattaaaaagaatgaatttatgaaattcctaggcaaa
tggttggacctggagggcatcatcctgagtgaggtaacacaatcacaaaa
gaactcaaatgatatgtactcactgataagtggatattagcccagaaact
ttgtacagcgagatataagggacaatttgcaaaacacatgaaactgaaga
agaacgaagaccaaagtgtgggcactttgccccttcttagaactggaaac
aatcacctatggaaggagttacagagacaaagtttggagttgagacaaaa
ggatggaccgtctagagactgccatatccagcgatccatcccataattag
cctccaaatgatgacaccatttcatacactagcaagcatttgatgcaagg
actgtgatatagctgtctcttgtgagactaggccggggcctagcaaacac
agaagtggatgctcacagtcaactattggatggatcgaaaggcccccaat
ggaggagctagagaaagtatccaaggagctaaagagatctgcaaccctgt
agtgcaacattatgaagtaaccagtaccccggagctcttgtctctagctg
catatgttttcaaaagatggcctagtcagcatcactgcaagaagagccat
tggacaggcaacttatatgctcagtgcaggggacgccagggccaaaaaaa
aaaaaatgtgaaatgggtggggtatgggggatgcgtcgttcctccc

gaattccaagaaaggcaaaaccatctacaaaattataatcaaaacatctg
aagaaccttcttttagagatcacagaggcattgtcagggactttttagtt
agctcaggccccttctatccttgacagaaagtgagaaggtgaaaccaggt
attagagacatgtgcaagagacaagagtaaacaaatattgtagatatgaa
gcaagatgtgagaggaccatagatatagatgaggacaaggcaaagtgact
tcccccatctctgctctgtggccaggaggggaacatttaaattgaagaat
aaagatatttatcatgggaaccttttaaaggttcaattagcatttgctat
ataccaggattgcttactctgaagaaatgttcacaggaaagaactctaaa
agctgacaaggaaaggtcacaaaatacaatcatgttgaaaaggtatgtgc
ccagcaattagccttattatgggaagaaatggtcttgattgcctttgaaa
agaaaacagtcaaaattgcagtcttggacattttactttaagttttgtag
actctagagatagagaatccaggttctgctactgaacagaagttaacact
tcacagcctaaagtcttgtgattctaaaactattgtcttaagacactttg
aaattatgttgaagaccctcaagccctttacactactagaataggctctc
atatacccaaagttatgattaattaatttatataaattaatttatataag
taaggaagatgctgaccctctcatcctcctgtgtccatctcttgagctgg
tgtaaaataagaatgccaccatgcctgattttcagtgctaggatttaaat
ccagagtgtcatgcagacagtctctcatctgagctataccctcaacttcc
atgtgtagtcaatagtatgtgatacttcattgaaataggccaaaagcatt
ctttgccattgggtttgtatagaggtatacattatatttagatttcaaag
atattggtgtacactggtcattctatgatcagaagtatctatgtgtagag
tcatgagagatacttttaatctatcatgtgctgagatgtactctactgca
tagctcctcctgtgtccacttatgggtgagggaatgtaaaaagaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_104995979_104997143
seq2: B6Ng01-334A23.g_66_1212

seq1  GAATTCCAAGAAAGGCAAAACCATCTACAAAATTATAATCAAAACATCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGAAAGGCAAAACCATCTACAAAATTATAATCAAAACATCTG  50

seq1  AAGAACCTTCTTTTAGAGATCACAGAGGCATTGTCAGGGACTTTTTAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCTTCTTTTAGAGATCACAGAGGCATTGTCAGGGACTTTTTAGTT  100

seq1  AGCTCAGGCCCCTTCTATCCTTGACAGAAAGTGAGAAGGTGAAACCAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGGCCCCTTCTATCCTTGACAGAAAGTGAGAAGGTGAAACCAGGT  150

seq1  ATTAGAGACATGTGCAAGAGACAAGAGTAAACAAATATTGTAGATATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAGACATGTGCAAGAGACAAGAGTAAACAAATATTGTAGATATGAA  200

seq1  GCAAGATGTGAGAGGACCATAGATATAGATGAGGACAAGGCAAAGTGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGATGTGAGAGGACCATAGATATAGATGAGGACAAGGCAAAGTGACT  250

seq1  TCCCCCATCTCTGCTCTGTGGCCAGGAGGGGAACATTTAAATTGAAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCATCTCTGCTCTGTGGCCAGGAGGGGAACATTTAAATTGAAGAAT  300

seq1  AAAGATATTTATCATGGGAACCTTTTAAAGGTTCAATTAGCATTTGCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATATTTATCATGGGAACCTTTTAAAGGTTCAATTAGCATTTGCTAT  350

seq1  ATACCAGGATTGCTTACTCTGAAGAAATGTTCACAGGAAAGAACTCTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAGGATTGCTTACTCTGAAGAAATGTTCACAGGAAAGAACTCTAAA  400

seq1  AGCTGACAAGGAAAGGTCACAAAATACAATCATGTTGAAAAGGTATGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACAAGGAAAGGTCACAAAATACAATCATGTTGAAAAGGTATGTGC  450

seq1  CCAGCAATTAGCCTTATTATGGGAAGAAATGGTCTTGATTGCCTTTGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAATTAGCCTTATTATGGGAAGAAATGGTCTTGATTGCCTTTGAAA  500

seq1  AGAAAACAGTCAAAATTGCAGTCTTGGACATTTTACTTTAAGTTTTGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACAGTCAAAATTGCAGTCTTGGACATTTTACTTTAAGTTTTGTAG  550

seq1  ACTCTAGAGATAGAGAATCCAGGTTCTGCTACTGAACAGAAGTTAACACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAGAGATAGAGAATCCAGGTTCTGCTACTGAACAGAAGTTAACACT  600

seq1  TCACAGCCTAAAGTCTTGTGATTCTAAAACTATTGTCTTAAGACACTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCCTAAAGTCTTGTGATTCTAAAACTATTGTCTTAAGACACTTTG  650

seq1  AAATTATGTTGAAGACCCTCAAGCCCTTTACACTACTAGAATAGGCTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATGTTGAAGACCCTCAAGCCCTTTACACTACTAGAATAGGCTCTC  700

seq1  ATATACCCAAAGTTATGATTAATTAATTTATATAAATTAATTTATATAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACCCAAAGTTATGATTAATTAATTTATATAAATTAATTTATATAAG  750

seq1  TAAGGAAGATGCTGACCCTCTCATCCTCCTGTGTCCATCTCTTGAGCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAGATGCTGACCCTCTCATCCTCCTGTGTCCATCTCTTGAGCTGG  800

seq1  TGTAAAATAAGAATGCCACCATGCCTGATTTTCAGTGCTAGGATTTAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAATAAGAATGCCACCATGCCTGATTTTCAGTGCTAGGATTTAAAT  850

seq1  CCAGAGTGTCATGCAGACAGTCTCTCATCTGAGCTATACCCTCAACTTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTGTCATGCAGACAGTCTCTCATCTGAGCTATACCCTCAACTTCC  900

seq1  ATGTGTAGTCAATAGTATGTGATACTTCATTGAAAATAGGCCAAAAGCAT  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATGTGTAGTCAATAGTATGTGATACTTCATTG-AAATAGGCCAAAAGCAT  949

seq1  TCTTTGCCATTGGGTTTGTATAGAGGTATACATTATATTTAGATTTCAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCCATTGGGTTTGTATAGAGGTATACATTATATTTAGATTTCAAA  999

seq1  GATATTTGGTGTACACTGGTCATTCTAATGATCAAGAAAGTTATTTCTTA  1050
      |||| ||||||||||||||||||||| |||||| ||||   |||    ||
seq2  GATA-TTGGTGTACACTGGTCATTCT-ATGATC-AGAA--GTAT---CTA  1041

seq1  TGTGTTTAGAGTCATGAAGAAGATTAACTTTTAAATCTATCATGTGCTGA  1100
      ||||  |||||||||||   ||||  |||||| |||||||||||||||| 
seq2  TGTG--TAGAGTCATGA--GAGAT--ACTTTT-AATCTATCATGTGCTG-  1083

seq1  AGATGTACTTCCTAACTTGCATTTAGCTTTCCTTTCCTGTGTCCACTTAT  1150
      |||||||||  |||   ||||  ||||  |||  ||||||||||||||||
seq2  AGATGTACT--CTA--CTGCA--TAGC--TCC--TCCTGTGTCCACTTAT  1123

seq1  -GGTGAGG--------AAAGAAAA  1165
       |||||||        ||||||||
seq2  GGGTGAGGGAATGTAAAAAGAAAA  1147


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