BAC Information

Click to search

BAC

Clone NameB6Ng01-334B11
Chromosome14 (Build37)1 (Build37)
Map Location 123,982,506 - 123,983,498151,086,591 - 151,087,032
singlet/doubletsingletsinglet
Overlap geneVgcnl1
Upstream genePcca, BC006662, 4930594M22Rik, Tmtc4
Downstream geneItgbl1, LOC668700, Fgf14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334B11.bB6Ng01-334B11.g
ACCGA119681GA119682
length995122
definitionB6Ng01-334B11.b B6Ng01-334B11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(123,982,506 - 123,983,498)(151,086,591 - 151,087,032)
sequence
gaattctgccctctctaagaaaatttttatatttttaacatttaccttta
cttgccctgaagctattctaattgtctcactcctgggaataagattttct
tattttatatgaagccatgaatacatttccttcctctctcagttgtgata
ataagctgtcaggtgagtgttcatctttgctatttcacctgctgcttcat
ctttgcaggttcctctttcagctcacagcagatatctgacatcacatttg
gcattttgcagcacctgtttctgccataggccattgcccttctcaacttt
ctttaggaaatgagctgttttgcttagtcaaatctcattactctttccat
aattgccttagattgaagttcattatcagagaggaatctcagccttgact
ggtaatgctgctgaagatgtggctaaggtgtttttttatatgctttaaga
aatgcatgttgcttaaaagtaaaagtgtgaatgactaattacctcactct
ttatcctctttgactcacagattaaacaagatccatcccagagttcagtg
gtgagatcttttttgtttgaaagattttctattattaagaagatagtgca
tgcaagttaattagtctaaagctagaagtcctcacagcacttagcaacat
tgcttccttaagcataaccatagcttactatttgactcagacatatttat
tagataaaatgaattaatattgttttatatgtgtacatgtgggtacatgt
gtatatgtttatctacatgtgtggggcacacatgagtgtgttgtgtgtgt
atgtctgtgtgagcatgtgtgcatgtgtatgtctctgtgtgtgagtgtgt
gtgtgtgtgcatgtgtgtgtgtgtgcatgtgtatatatgtttcgtgtcta
tgtgtgtctgtgtatttgtgtgcatatgtgtgtctatgtgtgtgcctgtg
tgtgtctatgtgcaatgtacaggtgcatgtgtgtgtgtatgtctg

tttgttcagagaggtagatcagtggaatagaattgaagacccagaaatga
acccacacacctatggttacttgatctttgacaagggagctaaaaccatc
cagtgtgtgtgtgggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_123982506_123983498
seq2: B6Ng01-334B11.b_47_1041

seq1  GAATTCTGCCCTCTCTAAGAAAATTTTTATATTTTTAACATTTACCTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCCTCTCTAAGAAAATTTTTATATTTTTAACATTTACCTTTA  50

seq1  CTTGCCCTGAAGCTATTCTAATTGTCTCACTCCTGGGAATAAGATTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCCTGAAGCTATTCTAATTGTCTCACTCCTGGGAATAAGATTTTCT  100

seq1  TATTTTATATGAAGCCATGAATACATTTCCTTCCTCTCTCAGTTGTGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATATGAAGCCATGAATACATTTCCTTCCTCTCTCAGTTGTGATA  150

seq1  ATAAGCTGTCAGGTGAGTGTTCATCTTTGCTATTTCACCTGCTGCTTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCTGTCAGGTGAGTGTTCATCTTTGCTATTTCACCTGCTGCTTCAT  200

seq1  CTTTGCAGGTTCCTCTTTCAGCTCACAGCAGATATCTGACATCACATTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCAGGTTCCTCTTTCAGCTCACAGCAGATATCTGACATCACATTTG  250

seq1  GCATTTTGCAGCACCTGTTTCTGCCATAGGCCATTGCCCTTCTCAACTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTGCAGCACCTGTTTCTGCCATAGGCCATTGCCCTTCTCAACTTT  300

seq1  CTTTAGGAAATGAGCTGTTTTGCTTAGTCAAATCTCATTACTCTTTCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGAAATGAGCTGTTTTGCTTAGTCAAATCTCATTACTCTTTCCAT  350

seq1  AATTGCCTTAGATTGAAGTTCATTATCAGAGAGGAATCTCAGCCTTGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCCTTAGATTGAAGTTCATTATCAGAGAGGAATCTCAGCCTTGACT  400

seq1  GGTAATGCTGCTGAAGATGTGGCTAAGGTGTTTTTTTATATGCTTTAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATGCTGCTGAAGATGTGGCTAAGGTGTTTTTTTATATGCTTTAAGA  450

seq1  AATGCATGTTGCTTAAAAGTAAAAGTGTGAATGACTAATTACCTCACTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATGTTGCTTAAAAGTAAAAGTGTGAATGACTAATTACCTCACTCT  500

seq1  TTATCCTCTTTGACTCACAGATTAAACAAGATCCATCCCAGAGTTCAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTCTTTGACTCACAGATTAAACAAGATCCATCCCAGAGTTCAGTG  550

seq1  GTGAGATCTTTTTTGTTTGAAAGATTTTCTATTATTAAGAAGATAGTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGATCTTTTTTGTTTGAAAGATTTTCTATTATTAAGAAGATAGTGCA  600

seq1  TGCAAGTTAATTAGTCTAAAGCTAGAAGTCCTCACAGCACTTAGCAACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGTTAATTAGTCTAAAGCTAGAAGTCCTCACAGCACTTAGCAACAT  650

seq1  TGCTTCCTTAAGCATAACCATAGCTTACTATTTGACTCAGACATATTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCTTAAGCATAACCATAGCTTACTATTTGACTCAGACATATTTAT  700

seq1  TAGATAAAATGAATTAATATTGTTTTATATGTGTACATGTGGGTACATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAAAATGAATTAATATTGTTTTATATGTGTACATGTGGGTACATGT  750

seq1  GTATATGTTTATCTACATGTGTGGGGCACACATGAGTGTGTTGTGTGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGTTTATCTACATGTGTGGGGCACACATGAGTGTGTTGTGTGTGT  800

seq1  ATGTCTGTGTGAGCATGTGTGCATGTGTATGTCTCTGTGTGTGAGTGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGTGTGAGCATGTGTGCATGTGTATGTCTCTGTGTGTGAGTGTGT  850

seq1  GTGTGTGTGCATGTGTGTGTGTGTGCATGTGTATATATG-TTCGTGTCTA  899
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTGTGTGTGCATGTGTGTGTGTGTGCATGTGTATATATGTTTCGTGTCTA  900

seq1  TGTGTGTCTGTGTATTTGTGTGCATATGTGTGTCTATGTGTGTGCCTGTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTCTGTGTATTTGTGTGCATATGTGTGTCTATGTGTGTGCCTGTG  950

seq1  TGTGTCTATGTGC-ATGTACATGTGCATGTGTGTGTGTATGTCTG  993
      ||||||||||||| ||||||| |||||||||||||||||||||||
seq2  TGTGTCTATGTGCAATGTACAGGTGCATGTGTGTGTGTATGTCTG  995


seq1: chr1_151086591_151087032
seq2: B6Ng01-334B11.g_84_192 (reverse)

seq1  CCCCCCCCCCACACACACACACACACACGCGCGCGCGCATGCCCGGCAGG  50
                                                        
seq2  --------------------------------------------------  0

seq1  GAGGGAAGTAGGGAGAGAGAAAGAGGCAGAGATGGGGAGAGACAGAGAGA  100
                                                        
seq2  --------------------------------------------------  0

seq1  TAGAGAGGCATAGACAGTCTTTGGAATATACATGTCTAAATGAAATGTCT  150
                                                        
seq2  --------------------------------------------------  0

seq1  CAATGAAGTTTCTTCCCTTAGAGCTCAGGGATCCCAGCAAAGAAGCAGAA  200
                                                        
seq2  --------------------------------------------------  0

seq1  AGTTTCACTGTCTCTGGTTTTATGTGGAGGTCCTTGATCCACTTGGACTT  250
                                                        
seq2  --------------------------------------------------  0

seq1  GAGCTTTGTACAAGGAGATAGGAATGGATCAATTTGCATTCTTCTACATG  300
                                                        
seq2  --------------------------------------------------  0

seq1  CTAACCACTACTTGAACCAGTACCATTTGTTGATAATGCTGGCTTTTTTC  350
          || |  |     |||    ||                         
seq2  ----CCCCCCC----CCCACACACA-------------------------  17

seq1  CACTGGATGGTTTTAGTTCCTTTATCAAAGATCAAATGACCATAGGGGTA  400
      |||||||||||||||| ||| || ||||||||||| | |||||||| || 
seq2  CACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTAACCATAGGTGTG  67

seq1  TGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGATCTAC  442
      ||||||||||||||||||||||||||||||||| ||||||||
seq2  TGGGTTCATTTCTGGGTCTTCAATTCTATTCCACTGATCTAC  109


| Home | SequenceCutter | Blast | Download |