BAC Information

Click to search

BAC

Clone NameB6Ng01-334O01
Chromosome1 (Build37)
Map Location 80,719,184 - 80,720,296
singlet/doubletsinglet
Overlap geneDock10
Upstream geneWdfy1, Mrpl44, Serpine2, EG433326, LOC665064, LOC100039325, A830043J08Rik, 2310015K22Rik, Cul3, EG620899, 1700016L21Rik
Downstream geneLOC665092, 9430031J16Rik, EG621020
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334O01.bB6Ng01-334O01.g
ACCGA120273GA120274
length9141,102
definitionB6Ng01-334O01.b B6Ng01-334O01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgctttttccatctatggtaattgagagtttggctgggtata
gtagcctaggctggcatttgtgttctcttagtgtctgtataacatctgtc
caggctcttctggctttcatagtctctggtgaaaagtctggtgtaattct
gataggcctttctttatatgttacttgacctttctcccttactgctttta
atattctctctttatttagtgcatttgttgttttgattattatgtgtcgg
aaggaatttcttttctggtccagtctatttggagttctgtaggcttcttg
tatgttcatgggcatgttattctctaggtttgggaagttttcttctatga
ttttgttgaagatattttctggtcctttaagttgaaaatcttcattttca
tcaactcctattatccgtaggtttggtcttctcattgtgtcctggatttc
ctggatattttgagttaggatctttttgcatattccattttctttgattg
ttgtgccgatgttctctatggaatcttctgcacctgagattctctcttcc
atctcttgttttctgttgctgatgctcgcatctatggttccagatttctt
tcctaggttttctatctccagctttgcctcactttgggttttctttattg
tgtctacttccctttttatgtcttagatggttttattcaattccatcacc
tgtttggtcgtgttttcctgcaattctttaaggaatttttgtgtttcctc
tttaaggtcttctacctgtttagctgtgttctcctgtatttctttaatga
gttattaaagtccttcttgatgtcctctaccatcatcatgagatatgctt
ttaaatccgggtcttgctttttgggtgtgttggggtgcccaggactagtg
ggggtgggagagct

gaattctaagaaggatagagaacttttggaccaccatggctatagagggc
cagtcagttcagtcaagaggtttagatgtggtgtctaagaagctatctgc
tgttggccatgtgtgttggataactgttatggggtagaaaaatgaagata
ataagttctttaaagacgagaggctcaagcttcagaagcaaacagcctta
gaaggtaactctgctggcattttccacataagcatcgccccctggtgtcc
acgcagagaggacgcttcaagagctgtcttgtaagaaggaagtaatgcta
tccctaacaccatttacccatgttctcatttatccaggtcttagtcccta
actgcactgctgataaaggcagctacagcatgcagcatcaagcatcatac
tgagtttaagacaaaaagcttctcctacttctgagtgtccattattgaca
gacatatcattaatattttcctggcagggatttcattaatttttcagttc
tcctgaacaaatgagaatattgaaacacattgtttcagaggctactggtt
acactgaaaatggctacacgatatctcaggaggatgttcagacactcagc
cagtcagtcatttatatccacagatggagaggagtgacagaccctgcttc
tcacagcttcctggactggaggagttaagattgtcctagattctcagtac
tcactgaagaattggaatgaccagatccgtgtggtctgcaccaagtggac
agataacaactgacaacaacgacaatggcaaagacgatgacacaatggtg
aggaccacatgaccatgatgattacatcatagccaaaatccctgtcaaag
tcagatcaaggatttataaactatgggggaaagagcatcatctttctttg
tttcaaacattccaaacggagtctcagagatgcttctctgtgagtcacag
tagagcttcctgtgaatgcagcctgttctctcaaagtacgtgtcatatgc
aatattagagatacttaataatcatgaaatgatgactagcagttctcagc
tccaatatcttcccactcccttattatctgccacacaaatacattgtatt
ac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_80719184_80720296
seq2: B6Ng01-334O01.g_69_1170

seq1  GAATTCTAAGAAGGATAGAGAACTTTTGGACCACCATGGCTATAGAGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGAAGGATAGAGAACTTTTGGACCACCATGGCTATAGAGGGC  50

seq1  CAGTCAGTTCAGTCAAGAGGTTTAGATGTGGTGTCTAAGAAGCTATCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGTTCAGTCAAGAGGTTTAGATGTGGTGTCTAAGAAGCTATCTGC  100

seq1  TGTTGGCCATGTGTGTTGGATAACTGTTATGGGGTAGAAAAATGAAGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGCCATGTGTGTTGGATAACTGTTATGGGGTAGAAAAATGAAGATA  150

seq1  ATAAGTTCTTTAAAGACGAGAGGCTCAAGCTTCAGAAGCAAACAGCCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTCTTTAAAGACGAGAGGCTCAAGCTTCAGAAGCAAACAGCCTTA  200

seq1  GAAGGTAACTCTGCTGGCATTTTCCACATAAGCATCGCCCCCTGGTGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTAACTCTGCTGGCATTTTCCACATAAGCATCGCCCCCTGGTGTCC  250

seq1  ACGCAGAGAGGACGCTTCAAGAGCTGTCTTGTAAGAAGGAAGTAATGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCAGAGAGGACGCTTCAAGAGCTGTCTTGTAAGAAGGAAGTAATGCTA  300

seq1  TCCCTAACACCATTTACCCATGTTCTCATTTATCCAGGTCTTAGTCCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAACACCATTTACCCATGTTCTCATTTATCCAGGTCTTAGTCCCTA  350

seq1  ACTGCACTGCTGATAAAGGCAGCTACAGCATGCAGCATCAAGCATCATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCACTGCTGATAAAGGCAGCTACAGCATGCAGCATCAAGCATCATAC  400

seq1  TGAGTTTAAGACAAAAAGCTTCTCCTACTTCTGAGTGTCCATTATTGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTAAGACAAAAAGCTTCTCCTACTTCTGAGTGTCCATTATTGACA  450

seq1  GACATATCATTAATATTTTCCTGGCAGGGATTTCATTAATTTTTCAGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATATCATTAATATTTTCCTGGCAGGGATTTCATTAATTTTTCAGTTC  500

seq1  TCCTGAACAAATGAGAATATTGAAACACATTGTTTCAGAGGCTACTGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAACAAATGAGAATATTGAAACACATTGTTTCAGAGGCTACTGGTT  550

seq1  ACACTGAAAATGGCTACACGATATCTCAGGAGGATGTTCAGACACTCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAAAATGGCTACACGATATCTCAGGAGGATGTTCAGACACTCAGC  600

seq1  CAGTCAGTCATTTATATCCACAGATGGAGAGGAGTGACAGACCCTGCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGTCATTTATATCCACAGATGGAGAGGAGTGACAGACCCTGCTTC  650

seq1  TCACAGCTTCCTGGACTGGAGGAGTTAAGATTGTCCTAGATTCTCAGTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCTTCCTGGACTGGAGGAGTTAAGATTGTCCTAGATTCTCAGTAC  700

seq1  TCACTGAAGAATTGGAATGACCAGATCCGTGTGGTCTGCACCAAGTGGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAAGAATTGGAATGACCAGATCCGTGTGGTCTGCACCAAGTGGAC  750

seq1  AGATAACAACTGACAACAACGACAATGGCAAAGACGATGACACAATGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAACAACTGACAACAACGACAATGGCAAAGACGATGACACAATGGTG  800

seq1  AGGACCACATGACCATGATGATTACATCATAGCCAAAATCCCTGTCAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCACATGACCATGATGATTACATCATAGCCAAAATCCCTGTCAAAG  850

seq1  TCAGATCAAGGATTTATAAACTATGGGGGAAAGAGCATCATCTTTCTTTT  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCAGATCAAGGATTTATAAACTATGGGGGAAAGAGCATCATCTTTC-TTT  899

seq1  GTTTCAAACATTCCAAACGGAGTCTCAGAGATGCTTCTCTGTGAGTCACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAAACATTCCAAACGGAGTCTCAGAGATGCTTCTCTGTGAGTCACA  949

seq1  GTAGAGCTTCCTGTTGAATGCAGCCTGTTCTCTCAAAAGTACGTGTCATA  1000
      ||||||||||||| |||||||||||||||||||| |||||||||||||||
seq2  GTAGAGCTTCCTG-TGAATGCAGCCTGTTCTCTC-AAAGTACGTGTCATA  997

seq1  ATGGCAATATTAAGAGATACTTAATAATCATGAAATGATGACTAGCAGTT  1050
         |||||||| ||||||||||||||||||||||||||||||||||||||
seq2  --TGCAATATT-AGAGATACTTAATAATCATGAAATGATGACTAGCAGTT  1044

seq1  CTCAAGCTCCCAATATCCTCCCACTCCCTTATTTAATCTGCAACACAAAT  1100
      ||| |||| |||||||| |||||||||||||||  |||||| ||||||||
seq2  CTC-AGCT-CCAATATCTTCCCACTCCCTTATT--ATCTGCCACACAAAT  1090

seq1  ACATTGTTATTAC  1113
      |||||| ||||||
seq2  ACATTG-TATTAC  1102


| Home | SequenceCutter | Blast | Download |