BAC Information

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BAC

Clone NameB6Ng01-336M08
Chromosome1 (Build37)
Map Location 80,844,027 - 80,845,221
singlet/doubletsinglet
Overlap genenone
Upstream geneSerpine2, EG433326, LOC665064, LOC100039325, A830043J08Rik, 2310015K22Rik, Cul3, EG620899, 1700016L21Rik, Dock10
Downstream geneLOC665092, 9430031J16Rik, EG621020, LOC433328, EG665145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336M08.bB6Ng01-336M08.g
ACCGA121593GA121594
length1,2131,169
definitionB6Ng01-336M08.b B6Ng01-336M08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccatttttaagggggttatttgattt
tctgaggtccaccttcttgagttctttatatatgttggatattagtcccc
tatctgatttaggataggtaaagatcctttcccagtctgttggtggtctt
tttgtcttatagacagtgtcttttgccttgcagaaactttggagtttcat
tagatcccatttgtcaattctcgatcttacagcacaagccattgctgttc
tgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccact
ttctcctctataagtttcagtgtctctggttttatgtgaagttccttgat
ccacttagatttgtccttagtacaaggagataagtatggatcgattcgca
ttcttctacatgataacaaccagttgtgccagcaccaattgttgaaaatg
ctgtctttcttccactggatggttttggctcccttgtcgaagatcaagtg
accataggtgtgtgggttcatttctgggtcttcaattctattccattggt
ccacttgtctgtctctataccagtaccatgcagtttttatcacaattgct
ctgtagtaaagctttaggtcaggcatggtgattccaccagaggttctttt
atccttgagaagagtttttgctatcctaggttttttgttattccaaacaa
atttgcaaattgctccttccaattcgttgaagaattgagttggaattttg
atggggattgcattgaatctgtagattgcttttggcaagatagccatttt
tacaatgttggtcctgccaatccatgagcatgggagatctttccatcttc
tgagatcttctttaatttctttcttcagggacttgaagtttttatcatac
agatctttcacttccttcgttagagtcacgccgagatattttatattatt
tgtggctattgagaagggtgttgtttccctaatttctttctcagcctgtt
tattctttgtgtagaagaaaggccatgacttgtttgagttaattttatat
ccagctacttcacgaagctgtttatcagtttaggagttcctctgttggga
tttaggttcacttatatatatactatcataatcactctgcaaaagtaaat
tggaactcccttttccaagttgtatcccttgatcccttttgttggtccag
atagtgcttctcg

gaattcatatcaaaaccatgaaaatttaaaattagaattaaataacgcag
tgtaaggatttgcttaaaatgtatagagttctcatatataaaactaagat
aaaaaagaaatatccagggggaataaccacttctttgtttaagatggtca
tttgaatgtgacataagatattgtattgctaaggtaggaaagtgttttaa
atttgtagttaaagatgtaagggtgctacacgacgccttcacaaatgtat
aaaagttgcacagaaagaaagaaatcattagacaaattttgcaaaatttt
cacaatgcaaaaaatacaaacaagagacaacaaaaacaaaaaacagaaaa
caaaagtaagagtcaatttataaagagttcattaggactgatggggttaa
tatcttacttcatgggctgtattaattttcctggtttgtggcagagggtg
ataaacaaattattgggatagatttcaaacagcagaacatggaaaaactc
attagcttcttttggcctcaagctatcaatgtttctacctgtgattaatg
atcctttctgtctgtcctcagccttggaaataggtggaagtctgcaaagg
aaactttatatcttttttatttggcaccttgaaaaaaaattgtcgtttaa
aggttaatttctcaacccaagaagtttctttgttagcatgaataggagaa
ttgttttcaagtagaagatgtcaattagaatgactaaaacttgcatgtat
tttggcaattctgagttaaatattagctgaaagtggtcacatacaccttt
gatctcagcactcagaaggcagaggcaagtggatctctgtgaattcaagg
tctgcctggtcatcatagcaaattgtaatccatcttagtgagattatgtc
tcaaaatattgtattgtattgtaaaagtatgtaagtacatttctatatat
atccatcacatatatataaacttatgtagactatttagtagttatacatc
agcaagtatatatcatattatatatatatatactaaatatacatactata
tacatataggtatatgtgatacaatacatattaatatacatattaactat
catcatacaacacatagccatgacctatacggacaggttcagtcaattgt
gtctatagataagaacatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_80844027_80845221
seq2: B6Ng01-336M08.g_62_1230

seq1  GAATTCATATCAAAACCATGAAAATTTAAAATTAGAATTAAATAACGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATCAAAACCATGAAAATTTAAAATTAGAATTAAATAACGCAG  50

seq1  TGTAAGGATTTGCTTAAAATGTATAGAGTTCTCATATATAAAACTAAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGGATTTGCTTAAAATGTATAGAGTTCTCATATATAAAACTAAGAT  100

seq1  AAAAAAGAAATATCCAGGGGGAATAACCACTTCTTTGTTTAAGATGGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAATATCCAGGGGGAATAACCACTTCTTTGTTTAAGATGGTCA  150

seq1  TTTGAATGTGACATAAGATATTGTATTGCTAAGGTAGGAAAGTGTTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATGTGACATAAGATATTGTATTGCTAAGGTAGGAAAGTGTTTTAA  200

seq1  ATTTGTAGTTAAAGATGTAAGGGTGCTACACGACGCCTTCACAAATGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTAGTTAAAGATGTAAGGGTGCTACACGACGCCTTCACAAATGTAT  250

seq1  AAAAGTTGCACAGAAAGAAAGAAATCATTAGACAAATTTTGCAAAATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTGCACAGAAAGAAAGAAATCATTAGACAAATTTTGCAAAATTTT  300

seq1  CACAATGCAAAAAATACAAACAAGAGACAACAAAAACAAAAAACAGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGCAAAAAATACAAACAAGAGACAACAAAAACAAAAAACAGAAAA  350

seq1  CAAAAGTAAGAGTCAATTTATAAAGAGTTCATTAGGACTGATGGGGTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTAAGAGTCAATTTATAAAGAGTTCATTAGGACTGATGGGGTTAA  400

seq1  TATCTTACTTCATGGGCTGTATTAATTTTCCTGGTTTGTGGCAGAGGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTACTTCATGGGCTGTATTAATTTTCCTGGTTTGTGGCAGAGGGTG  450

seq1  ATAAACAAATTATTGGGATAGATTTCAAACAGCAGAACATGGAAAAACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAAATTATTGGGATAGATTTCAAACAGCAGAACATGGAAAAACTC  500

seq1  ATTAGCTTCTTTTGGCCTCAAGCTATCAATGTTTCTACCTGTGATTAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCTTCTTTTGGCCTCAAGCTATCAATGTTTCTACCTGTGATTAATG  550

seq1  ATCCTTTCTGTCTGTCCTCAGCCTTGGAAATAGGTGGAAGTCTGCAAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTCTGTCTGTCCTCAGCCTTGGAAATAGGTGGAAGTCTGCAAAGG  600

seq1  AAACTTTATATCTTTTTTATTTGGCACCTTGAAAAAAAATTGTCGTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTATATCTTTTTTATTTGGCACCTTGAAAAAAAATTGTCGTTTAA  650

seq1  AGGTTAATTTCTCAACCCAAGAAGTTTCTTTGTTAGCATGAATAGGAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAATTTCTCAACCCAAGAAGTTTCTTTGTTAGCATGAATAGGAGAA  700

seq1  TTGTTTTCAAGTAGAAGATGTCAAATTAGAATGACTAAAACTTGCATGTA  750
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTGTTTTCAAGTAGAAGATGTC-AATTAGAATGACTAAAACTTGCATGTA  749

seq1  TTTTGGCAATTCTGAGTTAAATATTAGCTGAAAGTGGTCACATACACCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCAATTCTGAGTTAAATATTAGCTGAAAGTGGTCACATACACCTT  799

seq1  TGATCTCAGCACTCAGAAGGCAGAGGCAAGTGGATCTCTGTGAATTCAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTCAGCACTCAGAAGGCAGAGGCAAGTGGATCTCTGTGAATTCAAG  849

seq1  GTCTGCCTGGTCATCATAGCAAATTGTAATCCATCTTAGTGAGATTATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCCTGGTCATCATAGCAAATTGTAATCCATCTTAGTGAGATTATGT  899

seq1  CTCAAAATATTTGTATTGTATTGTAAAAGTATGTAAGTACATTTTCTATA  950
      ||||||||| ||||||||||||||||||||||||||||||| ||||||||
seq2  CTCAAAATA-TTGTATTGTATTGTAAAAGTATGTAAGTACA-TTTCTATA  947

seq1  TAATATCCATCACATATATTATAAACTTATGTAGACTAATTTAAGTAGTT  1000
      | |||||||||||||||| |||||||||||||||||||  || |||||||
seq2  T-ATATCCATCACATATA-TATAAACTTATGTAGACTA--TTTAGTAGTT  993

seq1  ATACATCAGCAAAGGTATATAATCATATATATATATATATA-ACTAAATA  1049
      ||||||||||||  |||||| ||||||| |||||||||||| ||||||||
seq2  ATACATCAGCAA--GTATAT-ATCATAT-TATATATATATATACTAAATA  1039

seq1  TACAATACATATATAACATATAAGTATATGTGAATAAACATATACATATA  1099
      ||| |||| ||||| ||||||| |||||||||   | ||| |||||||| 
seq2  TAC-ATAC-TATAT-ACATATAGGTATATGTG---ATACA-ATACATATT  1082

seq1  ATTATACATATAAACTATAAATTCATACAAACACATTAAGCAATGACTAA  1149
      | ||||||||| |||||| |  |||||| |||||||  ||| |||||  |
seq2  AATATACATATTAACTATCA--TCATAC-AACACAT--AGCCATGACCTA  1127

seq1  TAACAGGACCAGGTTCCAGGTCACATTGTGTC-ATAG-TAAGAACATG  1195
      ||   ||| |||||||   |||| |||||||| |||| ||||||||||
seq2  TA--CGGA-CAGGTTC--AGTCA-ATTGTGTCTATAGATAAGAACATG  1169


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