BAC Information

Click to search

BAC

Clone NameB6Ng01-338E04
Chromosome1 (Build37)
Map Location 82,367,540 - 82,490,612
singlet/doubletdoublet
Overlap geneRhbdd1, Col4a4
Upstream geneEG621020, LOC433328, EG665145, Irs1
Downstream geneCol4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338E04.bB6Ng01-338E04.g
ACCGA122624GA122625
length1,171449
definitionB6Ng01-338E04.b B6Ng01-338E04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,489,430 - 82,490,612)(82,367,540 - 82,367,994)
sequence
gaattcttcacagtacagattataagaaaaatcactctgacacatttacc
tggagcaatgagtgcagaatgcttctttaaaccacactggaaaacttttg
ggggacagggaggaaagggtcttttcggcttatacttccagatcatagtc
cctcactggaggaagtcaagaccagaactcaagcatgactagaacctgga
ggcaggagctgatgcaaggccatgaagggatgctgcttactggcttgctt
cccatggcttgctcagcctaccatcttacaaaaccctggctggttgtcct
gaaaacttttacttccataaaatcaacataactccaaaaggacaattaac
acaggcatttcaaaatccctttttctgttgttcctccttggtttgtttct
gctcgattgaatattcggtttatttgctcttacttaggtctgaaggggtt
tccaggccccccaggggctcctggtatgagatgtccagatgggcagaaag
gccagcggggcaaaccgggaatgtctgggattccaggtccacctggtaag
tgaaggctttctcttgccttgggagcatctgcatcaggaaattttgcata
ttcttaaagatggatactcttaagaaaacagacagagggtctgggggatg
atggaagaatggttctctgggggcggttgggggacacagaccctcagcta
tgtgtgacaacttgtagatgaagagaatcctacgcaggtgaggctcctgc
tgcagggaagcctttggtgttggctggcccaagttcattgtgtggctgaa
agcacgcaatcgagagcagtgcctgtcagataaagacagtggtcaggggg
ctggtcacagtggaactcagctgtaatcctgcaacactaggtgtggaggc
aggagaaccaccttcagttttaggccatcctgggatatgtactacggtct
aagcagcttgagttactcagtagttactcagtgagacactgtctcaaaaa
tacaaataaatgtaaaaaaataattttaagggagatggcagcatggctca
gtgagaaaaaattgcttgctacgagctgatgacctgagttccatccctga
agacccccaattgtcctctgaccttcagggtgcacgcctgcctccacagt
taatacatttacagataaaac
aagaacacggtcctggcctcagcccaggtctggtgatgctcttctttgac
agaggagtcctggggcagtacatggcatctcactggccagagacaggaac
aaatatgattgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgttttgtaaa
tccagtaggattggatggtgagctgcacacactgcagaggtcctgtctcc
acgcagctcagtcagattcaccatctagcctcttcatatcgattatccct
ataactgaagactcatctcctgcatgaaaggagaacaagggtgtttcgga
tggttgggtgggtagttcagtaacaggtgctgggtatcctaattcaggag
gctgaacgtgtctccctttagatgcttatgttgaaatcctagcccctacc
ctgacagtatttagaagtgggtcctttggtatgaaatcaaatggccaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_82489430_82490612
seq2: B6Ng01-338E04.b_41_1211 (reverse)

seq1  GTTTTATCTGTATAAATGTATTTACTTGTGGAGGCAGGCCGGTGCACACC  50
      ||||||||||  |||||||||| || |||||||||||||  |||||| ||
seq2  GTTTTATCTG--TAAATGTATTAAC-TGTGGAGGCAGGC--GTGCAC-CC  44

seq1  TGGAGGTCAGAGGACAATTTGTGGGTCTTTCAGGGATGGAACTCAGGTCA  100
      || |||||||||||||| ||| ||||| ||||||||||||||||||||||
seq2  TGAAGGTCAGAGGACAA-TTGGGGGTC-TTCAGGGATGGAACTCAGGTCA  92

seq1  TCAGGCTCGGTAGCAAGCAATTTTTTCTCACTGAGCCATGCTGCCATCCT  150
      ||| |||| |||||||||||||||||||||||||||||||||||||| ||
seq2  TCA-GCTC-GTAGCAAGCAATTTTTTCTCACTGAGCCATGCTGCCAT-CT  139

seq1  CCCTTAAAAATTATTTTTTTACATTTATTTGTATTTTTGAGACAGTGTCT  200
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTT-AAAATTATTTTTTTACATTTATTTGTATTTTTGAGACAGTGTCT  188

seq1  CACTGAGTAACTACTGAGTAACTCAAGCTGCTTAGACCGTAGTACATATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGTAACTACTGAGTAACTCAAGCTGCTTAGACCGTAGTACATATC  238

seq1  CCAGGATGGCCTAAAACTGAAGGTGGTTCTCCTGCCTCCACACCTAGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGATGGCCTAAAACTGAAGGTGGTTCTCCTGCCTCCACACCTAGTGT  288

seq1  TGCAGGATTACAGCTGAGTTCCACTGTGACCAGCCCCCTGACCACTGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGATTACAGCTGAGTTCCACTGTGACCAGCCCCCTGACCACTGTCT  338

seq1  TTATCTGACAGGCACTGCTCTCGATTGCGTGCTTTCAGCCACACAATGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGACAGGCACTGCTCTCGATTGCGTGCTTTCAGCCACACAATGAA  388

seq1  CTTGGGCCAGCCAACACCAAAGGCTTCCCTGCAGCAGGAGCCTCACCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGCCAGCCAACACCAAAGGCTTCCCTGCAGCAGGAGCCTCACCTGC  438

seq1  GTAGGATTCTCTTCATCTACAAGTTGTCACACATAGCTGAGGGTCTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGATTCTCTTCATCTACAAGTTGTCACACATAGCTGAGGGTCTGTGT  488

seq1  CCCCCAACCGCCCCCAGAGAACCATTCTTCCATCATCCCCCAGACCCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAACCGCCCCCAGAGAACCATTCTTCCATCATCCCCCAGACCCTCT  538

seq1  GTCTGTTTTCTTAAGAGTATCCATCTTTAAGAATATGCAAAATTTCCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTTTCTTAAGAGTATCCATCTTTAAGAATATGCAAAATTTCCTGA  588

seq1  TGCAGATGCTCCCAAGGCAAGAGAAAGCCTTCACTTACCAGGTGGACCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATGCTCCCAAGGCAAGAGAAAGCCTTCACTTACCAGGTGGACCTG  638

seq1  GAATCCCAGACATTCCCGGTTTGCCCCGCTGGCCTTTCTGCCCATCTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCCAGACATTCCCGGTTTGCCCCGCTGGCCTTTCTGCCCATCTGGA  688

seq1  CATCTCATACCAGGAGCCCCTGGGGGGCCTGGAAACCCCTTCAGACCTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCATACCAGGAGCCCCTGGGGGGCCTGGAAACCCCTTCAGACCTAA  738

seq1  GTAAGAGCAAATAAACCGAATATTCAATCGAGCAGAAACAAACCAAGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAGCAAATAAACCGAATATTCAATCGAGCAGAAACAAACCAAGGAG  788

seq1  GAACAACAGAAAAAGGGATTTTGAAATGCCTGTGTTAATTGTCCTTTTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACAGAAAAAGGGATTTTGAAATGCCTGTGTTAATTGTCCTTTTGG  838

seq1  AGTTATGTTGATTTTATGGAAGTAAAAGTTTTCAGGACAACCAGCCAGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGTTGATTTTATGGAAGTAAAAGTTTTCAGGACAACCAGCCAGGG  888

seq1  TTTTGTAAGATGGTAGGCTGAGCAAGCCATGGGAAGCAAGCCAGTAAGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAAGATGGTAGGCTGAGCAAGCCATGGGAAGCAAGCCAGTAAGCA  938

seq1  GCATCCCTTCATGGCCTTGCATCAGCTCCTGCCTCCAGGTTCTAGTCATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCCTTCATGGCCTTGCATCAGCTCCTGCCTCCAGGTTCTAGTCATG  988

seq1  CTTGAGTTCTGGTCTTGACTTCCTCCAGTGAGGGACTATGATCTGGAAGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTTCTGGTCTTGACTTCCTCCAGTGAGGGACTATGATCTGGAAGT  1038

seq1  ATAAGCCGAAAAGACCCTTTCCTCCCTGTCCCCCAAAAGTTTTCCAGTGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCCGAAAAGACCCTTTCCTCCCTGTCCCCCAAAAGTTTTCCAGTGT  1088

seq1  GGTTTAAAGAAGCATTCTGCACTCATTGCTCCAGGTAAATGTGTCAGAGT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAAAGAAGCATTCTGCACTCATTGCTCCAGGTAAATGTGTCAGAGT  1138

seq1  GATTTTTCTTATAATCTGTACTGTGAAGAATTC  1183
      |||||||||||||||||||||||||||||||||
seq2  GATTTTTCTTATAATCTGTACTGTGAAGAATTC  1171

seq1: chr1_82367540_82367994
seq2: B6Ng01-338E04.g_67_521

seq1  GAATTCAAGAACACGGTCCTGGCCTCAGCCCAGGTCTGGTGATGCTCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAACACGGTCCTGGCCTCAGCCCAGGTCTGGTGATGCTCTTC  50

seq1  TTTGACAGAGGAGTCCTGGGGCAGTACATGGCATCTCACTGGCCAGAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACAGAGGAGTCCTGGGGCAGTACATGGCATCTCACTGGCCAGAGAC  100

seq1  AGGAACAAATATGATTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACAAATATGATTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTTT  150

seq1  TGTAAATCCAGTAGGATTGGATGGTGAGCTGCACACACTGCAGAGGTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATCCAGTAGGATTGGATGGTGAGCTGCACACACTGCAGAGGTCCT  200

seq1  GTCTCCACGCAGCTCAGTCAGATTCACCATCTAGCCTCTTCATATCGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCACGCAGCTCAGTCAGATTCACCATCTAGCCTCTTCATATCGATT  250

seq1  ATCCCTATAACTGAAGACTCATCTCCTGCATGAAAGGAGAACAAGGGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTATAACTGAAGACTCATCTCCTGCATGAAAGGAGAACAAGGGTGT  300

seq1  TTCGGATGGTTGGGTGGGTAGTTCAGTAACAGGTGCTGGGTATCCTAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGATGGTTGGGTGGGTAGTTCAGTAACAGGTGCTGGGTATCCTAATT  350

seq1  CAGGAGGCTGAACGTGTCTCCCTTTAGATGCTTATGTTGAAATCCTAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGCTGAACGTGTCTCCCTTTAGATGCTTATGTTGAAATCCTAGCC  400

seq1  CCTACCCTGACAGTATTTAGAAGTGGGTCCTTTGGTATGAAATCAAATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCCTGACAGTATTTAGAAGTGGGTCCTTTGGTATGAAATCAAATGG  450

seq1  CCACA  455
      |||||
seq2  CCACA  455