BAC Information

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BAC

Clone NameB6Ng01-338I21
Chromosome1 (Build37)
Map Location 97,541,321 - 97,668,239
singlet/doubletdoublet
Overlap geneSt8sia4
Upstream geneLOC100040685, LOC383603, Tmem157, LOC100041686, Rnu7-ps2
Downstream geneGm1833
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338I21.bB6Ng01-338I21.g
ACCGA122822GA122823
length4631,196
definitionB6Ng01-338I21.b B6Ng01-338I21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,667,771 - 97,668,239)(97,541,321 - 97,542,521)
sequence
tctcatgttctttacagaacaattcatgatgatccaaagctgaaaacttt
aagtgtacaatcagttaaccaacagattccttacaatttgtgtaaattca
tttacttaaataatagtaacatataaagggaatggaattctgttgtttgc
tacggtgctttcatcctttgtcaaggaaaatcagtcaggcatagaaaaac
aagtactccatgctgtcacaaatgtgtgaattctaaaaagtttatttcaa
ggaagttgaaaatagaactggggagagtaactggggagggtggaattggg
tgggagaatattgaccagtgtttactgtgttacatctaagtaggtacagg
atgttccagaaggctatggcattatgatgttaccttatgaaacaattgca
tagcaccttctgtataaaataataacaaattttctaatatattttctaga
taagtgagaaaca

gaattcacattaaatcagagaggtaatacataaatacatgatttaaattg
ttgtataattttgattaagacatttaggctttaacgtaaagctcgtgagt
gtgtcctggttactcttcttcaagatatttaaatgtattttttgttcata
gaaagatcttaacagaaagacagtctcatggttagaccatatactacaac
ctattcaaccatatacatttcaacttgatggttttaactttgggtttcat
ttattaaaaataaagttttatagtcctagtccacactttgagtaattatt
gctgccctttgaaagtatcagatttaaagtggcattcttccttctgtcca
ccatggtgtcaacaaaagttaggacataatttagagatgtccttagtttc
acagtagacacacaattaatgtttctcaatgtagaagattcctgactcat
ctttaccatttaaagttctaaatgggttttgttgttgctgttgttgttgt
tgttgctgctgttttaaatgtttttagtctgtgtagaaaatactggtggg
atttgactagaaagaaggctgtgttgttttttgttccacatactgactac
ctccaaagaagccctacacatatgggtctatgaagaagtatacaaggttg
acctgtgtgtgaagcacctttagactcagatagtacaaattcaaattctc
catgatcaaccttatatttaatagatgtcataaaatgtctaatctttcct
tagagtttcatacttatcttgctgattatatttttcttattgtctcctcc
tcacatctgtagcctcttttcttatctcatcttggtacccattgttttca
gcatcaccttttgaacaaccttgacataaaaagcctaaatgctctaaacc
ctgaagccatttgatatcttcaagatattataagtgatgtatcatagtca
aatgctgtgctctgctaatttattagaaataccttcagtcaatttctaaa
ggtggtatgtaaaacgttagtgtcttatgctcagaaaggatccaacctta
acacctcattgcatattatttcaattattctttaaattgaaaaaaccaaa
tccaattgctatcctaggtagtaatattattgtatgatataattcccttt
cagcctgaatcatgtaattccttggataattgagttattgggtgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_97667771_97668239
seq2: B6Ng01-338I21.b_42_510 (reverse)

seq1  TGTTTCTCACTTATCTAGAAAATATATTTGAAAATTTGTTCTTATTTTCT  50
      |||||||||||||||||||||||||||| ||||||||||| ||||||| |
seq2  TGTTTCTCACTTATCTAGAAAATATATTAGAAAATTTGTTATTATTTTAT  50

seq1  ACAGAAGGTGCTATGCAATTGTTTCATAAGGTAACATCATAATGCCATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGGTGCTATGCAATTGTTTCATAAGGTAACATCATAATGCCATAG  100

seq1  CCTTCTGGAACATCCTGTACCTACTTAGATGTAACACAGTAAACACTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGGAACATCCTGTACCTACTTAGATGTAACACAGTAAACACTGGT  150

seq1  CAATATTCTCCCACCCAATTCCACCCTCCCCAGTTACTCTCCCCAGTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTCTCCCACCCAATTCCACCCTCCCCAGTTACTCTCCCCAGTTCT  200

seq1  ATTTTCAACTTCCTTGAAATAAACTTTTTAGAATTCACACATTTGTGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAACTTCCTTGAAATAAACTTTTTAGAATTCACACATTTGTGACA  250

seq1  GCATGGAGTACTTGTTTTTCTATGCCTGACTGATTTTCCTTGACAAAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGAGTACTTGTTTTTCTATGCCTGACTGATTTTCCTTGACAAAGGA  300

seq1  TGAAAGCACCGTAGCAAACAACAGAATTCCATTCCCTTTATATGTTACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCACCGTAGCAAACAACAGAATTCCATTCCCTTTATATGTTACTA  350

seq1  TTATTTAAGTAAATGAATTTACACAAATTGTAAGGAATCTGTTGGTTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAAGTAAATGAATTTACACAAATTGTAAGGAATCTGTTGGTTAAC  400

seq1  TGATTGTACACTTAAAGTTTTCAGCTTTGGATCATCATGAATTGTTCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGTACACTTAAAGTTTTCAGCTTTGGATCATCATGAATTGTTCTGT  450

seq1  AAAGAACATGAGAGAATTC  469
      |||||||||||||||||||
seq2  AAAGAACATGAGAGAATTC  469


seq1: chr1_97541321_97542521
seq2: B6Ng01-338I21.g_66_1261

seq1  GAATTCACATTAAATCAGAGAGGTAATACATAAATACATGATTTAAATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTAAATCAGAGAGGTAATACATAAATACATGATTTAAATTG  50

seq1  TTGTATAATTTTGATTAAGACATTTAGGCTTTAACGTAAAGCTCGTGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATAATTTTGATTAAGACATTTAGGCTTTAACGTAAAGCTCGTGAGT  100

seq1  GTGTCCTGGTTACTCTTCTTCAAGATATTTAAATGTATTTTTTGTTCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTGGTTACTCTTCTTCAAGATATTTAAATGTATTTTTTGTTCATA  150

seq1  GAAAGATCTTAACAGAAAGACAGTCTCATGGTTAGACCATATACTACAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATCTTAACAGAAAGACAGTCTCATGGTTAGACCATATACTACAAC  200

seq1  CTATTCAACCATATACATTTCAACTTGATGGTTTTAACTTTGGGTTTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCAACCATATACATTTCAACTTGATGGTTTTAACTTTGGGTTTCAT  250

seq1  TTATTAAAAATAAAGTTTTATAGTCCTAGTCCACACTTTGAGTAATTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAAAATAAAGTTTTATAGTCCTAGTCCACACTTTGAGTAATTATT  300

seq1  GCTGCCCTTTGAAAGTATCAGATTTAAAGTGGCATTCTTCCTTCTGTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCCTTTGAAAGTATCAGATTTAAAGTGGCATTCTTCCTTCTGTCCA  350

seq1  CCATGGTGTCAACAAAAGTTAGGACATAATTTAGAGATGTCCTTAGTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTGTCAACAAAAGTTAGGACATAATTTAGAGATGTCCTTAGTTTC  400

seq1  ACAGTAGACACACAATTAATGTTTCTCAATGTAGAAGATTCCTGACTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGACACACAATTAATGTTTCTCAATGTAGAAGATTCCTGACTCAT  450

seq1  CTTTACCATTTAAAGTTCTAAATGGGTTTTGTTGTTGCTGTTGTTGTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCATTTAAAGTTCTAAATGGGTTTTGTTGTTGCTGTTGTTGTTGT  500

seq1  TGTTGCTGCTGTTTTAAATGTTTTTAGTCTGTGTAGAAAATACTGGTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTGCTGTTTTAAATGTTTTTAGTCTGTGTAGAAAATACTGGTGGG  550

seq1  ATTTGACTAGAAAGAAGGCTGTGTTGTTTTTTGTTCCACATACTGACTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACTAGAAAGAAGGCTGTGTTGTTTTTTGTTCCACATACTGACTAC  600

seq1  CTCCAAAGAAGCCCTACACATATGGGTCTATGAAGAAGTATACAAGGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAAGAAGCCCTACACATATGGGTCTATGAAGAAGTATACAAGGTTG  650

seq1  ACCTGTGTGTGAAGCACCTTTAGACTCAGATAGTACAAATTCAAATTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGTGTGAAGCACCTTTAGACTCAGATAGTACAAATTCAAATTCTC  700

seq1  CATGATCAACCTTATATTTAATAGATGTCATAAAATGTCTAATCTTTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATCAACCTTATATTTAATAGATGTCATAAAATGTCTAATCTTTCCT  750

seq1  TAGAGTTTCATACTTATCTTGCTGATTATATTTTTCTTATTGTCTCCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTTTCATACTTATCTTGCTGATTATATTTTTCTTATTGTCTCCTCC  800

seq1  TCACATCTGTAGCCTCTTTTCTTATCTCATCTTGGTACCCATTGTTTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCTGTAGCCTCTTTTCTTATCTCATCTTGGTACCCATTGTTTTCA  850

seq1  GCATCACCTTTTGAACAACCTTGACATAAAAAGCCTAAATGCTCTAAACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCACCTTTTGAACAACCTTGACATAAAAAGCCTAAATGCTCTAAACC  900

seq1  CTGAAAGCCATTTGATATCTTCAAGATATTATAAGTGATGTATCATAGTC  950
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTG-AAGCCATTTGATATCTTCAAGATATTATAAGTGATGTATCATAGTC  949

seq1  AAATGCTGTGCTCTGCTAATTTATTAGAAATACCTTCAGTCAATTTCTAA  1000
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAATGCTGTGCTCTGCTAATTTATTAGAAATACCTTCAGTCAATTTCT-A  998

seq1  AAGGTGGTATGTAAAACGTAAGTGTC-TATGCTCAGAAAAGGATCCAAAC  1049
      ||||||||||||||||||| |||||| ||||||||| ||||||||||| |
seq2  AAGGTGGTATGTAAAACGTTAGTGTCTTATGCTCAG-AAAGGATCCAACC  1047

seq1  CTAAAACACCTCATTGCATAT--ATTCAAATATTCTTAAATTTGAGAAAA  1097
       |  |||||||||||||||||   ||||| ||||||| || |||| ||||
seq2  TT--AACACCTCATTGCATATTATTTCAATTATTCTTTAAATTGA-AAAA  1094

seq1  ACCAAATCAAATTGCTATCATA-GTAGTAATTATTATTGTATG--ATAAT  1144
      |||||||| |||||||||| || ||||||| ||||||||||||  |||||
seq2  ACCAAATCCAATTGCTATCCTAGGTAGTAA-TATTATTGTATGATATAAT  1143

seq1  TCCTTTTCAGCCTGAATCAATTGTATTCCCTTTGAGTTAATTGAGTTATT  1194
      ||| |||||||||||||||  |||| | |||| ||  |||||||||||||
seq2  TCCCTTTCAGCCTGAATCA--TGTAATTCCTTGGA--TAATTGAGTTATT  1189

seq1  GGTTGAA  1201
      || ||||
seq2  GGGTGAA  1196


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