BAC Information

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BAC

Clone NameB6Ng01-338N23
Chromosome1 (Build37)
Map Location 166,766,349 - 166,904,578
singlet/doubletdoublet
Overlap geneXcl1, 1700029M03Rik
Upstream geneKifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065, Dpt
Downstream geneTbx19, Sft2d2, Tiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1, Rcsd1, Creg1, Cd247, Pou2f1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338N23.bB6Ng01-338N23.g
ACCGA123031GA123032
length1,1021,067
definitionB6Ng01-338N23.b B6Ng01-338N23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(166,766,349 - 166,767,455)(166,903,504 - 166,904,578)
sequence
gaattccccactttcttgtaacactaattgtatgttaggctattaacctg
aatcattaagatgaggatttttcaaaggccccttgatgctattgtagcca
aaactttacctttcacccagtcccctaaagttcttctgatatccttagaa
gacagggattgtagcttagtttaccaaagtactgttcatgagaataattt
aaaagtgttacagcaagagacctcctatgatgctctgtgtgcagccctga
gtgccatcttgttatttgagcttaagtcattcctgggctgtagttaccat
aaagttcacttctatctgccagctgcttccaaccttgatctgacttttaa
tataatcactacaacagctcacaaatatctcttatgaaaaaacaacacga
tattttcaaatgcaaacagcttacccataatcaggattacaagtcatatg
aatttgatgattcaaagaaggcaaagaaagaaagaaaaagaaagaaagaa
agaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaag
aaaggaaaaaaggaaggaaggaaggaaggaaggaaggaaggaaagaagga
aggaaggaaggaaaagaaacaataaagtaatcaactgaagaatttgtccc
tggatatttgtcttaaaacatactaacacttaaaatcaaatttcctatta
attagcaggaaactactttactatgtgcagagtaaagaaatgtaaggtgc
tgtccaatatgagtccagagtgtcacaatggactcctcccaggctctttc
ttgtgcttccggtttgttccaatagtcaaatatgtttggagtatgcatac
caagaagtgacatgaagtcaccaataggatctgtcttagttagggtttcc
attgctgtgaagaaacaccatgactaaagaaactcttataaagacacatt
taattggggctggcttacaggttcaagattcagcccatatgaacaagcag
aatatggcagcatccagcaggaatagtgctggaagagccaagaattctat
atcttgatctgagcagcagaaaagagaactgtcttcttcagcagcaggag
aa
gaattctttccttttcttacagactgagatgatatctagagccagacacg
gatggaggaaataaagaatgtttacggaggagaggatgatgtgaatgaag
tcatagctgctgaacatcctgagactgggctcacaatttggagtattcca
gggccagggaggatgtgggacatcttattcaagttctttgcttcataaaa
aaggatgctggggttcttggggatatagctactttgttggcatccatgga
gctggttaatgttagagattagttagaccatgctaattgtctctgagaac
attgaggatgcccatagccccatggcaaaacactccaggaagtggtttct
gtgaatatcagccatcagggcaactgcctttgaagggtaggacaattatc
taaactcacactgtgtctgatgagctgagctgggacttaatcctgggatt
ttgatgactcaaagctctagctctttgtgcttactgtgaagatcgtccca
ggtctttcacagagttttttgaaagctgttgctaggaaacacagggtcag
gatcccagtacagaagcagttgaggagctagagggtttcattctacgatt
cagaatcacaaagcagggaaatgattttctgtcacactacgaacttaaca
tcaggatttctgttgatctgagcaaagcattgttagtttgtttatttatt
ttaattaaaatattttaaaacctttacaggggaatgcttaaatatcactc
tgagtggagacaactcatttaattgtgttttcttgttttgttttggtcag
ctttaattgtaaactcagtttgagttttgagcacactgtgatcttctgaa
cataggagcaacaatagtatcagctaacacacaccctgtgctgtatccat
ccaggtctagcctgtgcacacatcgctgtgtgtgttctttccaaccttgt
acagactatgtcctgcttcatttccacctaaaggaaggaactggaagtaa
aagagctgagcatactcaccacaattagaaaccagtgagtggatggatcc
agtgtgatcaaggtagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_166766349_166767455
seq2: B6Ng01-338N23.b_49_1150

seq1  GAATTCCCCACTTTCTTGTAACACTAATTGTATGTTAGGCTATTAACCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCACTTTCTTGTAACACTAATTGTATGTTAGGCTATTAACCTG  50

seq1  AATCATTAAGATGAGGATTTTTCAAAGGCCCCTTGATGCTATTGTAGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTAAGATGAGGATTTTTCAAAGGCCCCTTGATGCTATTGTAGCCA  100

seq1  AAACTTTACCTTTCACCCAGTCCCCTAAAGTTCTTCTGATATCCTTAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTACCTTTCACCCAGTCCCCTAAAGTTCTTCTGATATCCTTAGAA  150

seq1  GACAGGGATTGTAGCTTAGTTTACCAAAGTACTGTTCATGAGAATAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGATTGTAGCTTAGTTTACCAAAGTACTGTTCATGAGAATAATTT  200

seq1  AAAAGTGTTACAGCAAGAGACCTCCTATGATGCTCTGTGTGCAGCCCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGTTACAGCAAGAGACCTCCTATGATGCTCTGTGTGCAGCCCTGA  250

seq1  GTGCCATCTTGTTATTTGAGCTTAAGTCATTCCTGGGCTGTAGTTACCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCATCTTGTTATTTGAGCTTAAGTCATTCCTGGGCTGTAGTTACCAT  300

seq1  AAAGTTCACTTCTATCTGCCAGCTGCTTCCAACCTTGATCTGACTTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCACTTCTATCTGCCAGCTGCTTCCAACCTTGATCTGACTTTTAA  350

seq1  TATAATCACTACAACAGCTCACAAATATCTCTTATGAAAAAACAACACGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCACTACAACAGCTCACAAATATCTCTTATGAAAAAACAACACGA  400

seq1  TATTTTCAAATGCAAACAGCTTACCCATAATCAGGATTACAAGTCATATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCAAATGCAAACAGCTTACCCATAATCAGGATTACAAGTCATATG  450

seq1  AATTTGATGATTCAAAGAAGGCAAAGAAAGAAAGAA----AAAGAAAGAA  496
      ||||||||||||||||||||||||||||||||||||    ||||||||||
seq2  AATTTGATGATTCAAAGAAGGCAAAGAAAGAAAGAAAAAGAAAGAAAGAA  500

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  550

seq1  AAAGGAAAAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAGAAGGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAGAAGGA  600

seq1  AGGAAGGAAGGAAAAGAAACAATAAAGTAATCAACTGAAGAATTTGTCCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAAGGAAAAGAAACAATAAAGTAATCAACTGAAGAATTTGTCCC  650

seq1  TGGATATTTGTCTTAAAACATACTAACACTTAAAATCAAATTTCCTATTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATTTGTCTTAAAACATACTAACACTTAAAATCAAATTTCCTATTA  700

seq1  ATTAGCAGGAAACTACTTTACTATGTGCAGAGTAAAGAAATGTAAGGTGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCAGGAAACTACTTTACTATGTGCAGAGTAAAGAAATGTAAGGTGC  750

seq1  TGTCCAATATGAGTCCAGAGTGTCACAATGGACTCCTCCCAGGCTCTTTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAATATGAGTCCAGAGTGTCACAATGGACTCCTCCCAGGCTCTTTC  800

seq1  TTGTGCTTCCGGTTTGTTCCAATAGTCAAATATGTTTGGAGTATGCATAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTTCCGGTTTGTTCCAATAGTCAAATATGTTTGGAGTATGCATAC  850

seq1  CAAGAAGTGACATGAAGTCACCAATAGGATCTGTCTTAGTTAGGGTTTCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGTGACATGAAGTCACCAATAGGATCTGTCTTAGTTAGGGTTTCC  900

seq1  ATTGCTGTGAAGAAACACCATGACTAAAGAAACTCTTATAAAAGACAACA  946
      ||||||||||||||||||||||||||||||||||||||| |||||| |||
seq2  ATTGCTGTGAAGAAACACCATGACTAAAGAAACTCTTAT-AAAGAC-ACA  948

seq1  TTTAATTGGGGCTGGCTTACAGGTTCAAAGATTCAGCCCATATGAACAAG  996
      |||||||||||||||||||||||||| |||||||||||||||||||||| 
seq2  TTTAATTGGGGCTGGCTTACAGGTTC-AAGATTCAGCCCATATGAACAA-  996

seq1  GCAGGAATATGGCAGCATCCAGGCAGGAATAGTGCTGGAAGAGCCAAGAA  1046
      ||| ||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCA-GAATATGGCAGCATCCA-GCAGGAATAGTGCTGGAAGAGCCAAGAA  1044

seq1  TTCTATATCTTGATCTGAAGGCAGCCAGAAAGAG-ACTGTCTTCTTCAGG  1095
      ||||||||||||||||||  |||||   |||||| ||||||||||||| |
seq2  TTCTATATCTTGATCTGA--GCAGCAGAAAAGAGAACTGTCTTCTTCA-G  1091

seq1  CAGCAAGGAGAA  1107
      |||| |||||||
seq2  CAGC-AGGAGAA  1102

seq1: chr1_166903504_166904578
seq2: B6Ng01-338N23.g_68_1134 (reverse)

seq1  ACTACCCTTGATCACACATGGGATCCAT-CACTCACTGGTTTTCTAATTG  49
      |||| ||||||||||||   |||||||| |||||||||| ||||||||||
seq2  ACTA-CCTTGATCACAC--TGGATCCATCCACTCACTGG-TTTCTAATTG  46

seq1  TTGGTGAGTATGCTCAGCTCTTTTTACTTCCAGTTCCCTTCCTTTAAGGT  99
       ||||||||||||||||||| |||||||||||||| ||||||||| ||||
seq2  -TGGTGAGTATGCTCAGCTC-TTTTACTTCCAGTT-CCTTCCTTT-AGGT  92

seq1  GGAAATGAAAGCAGGACATAGTCTGTACAAGGTTGGAAAGAACACACACA  149
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATG-AAGCAGGACATAGTCTGTACAAGGTTGGAAAGAACACACACA  141

seq1  GCGATGTGTGCACAGGCTAGACCTGGATGGATACAGCACAGGGTGTGTGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATGTGTGCACAGGCTAGACCTGGATGGATACAGCACAGGGTGTGTGT  191

seq1  TAGCTGATACTATTGTTGCTCCTATGTTCAGAAGATCACAGTGTGCTCAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGATACTATTGTTGCTCCTATGTTCAGAAGATCACAGTGTGCTCAA  241

seq1  AACTCAAACTGAGTTTACAATTAAAGCTGACCAAAACAAAACAAGAAAAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAACTGAGTTTACAATTAAAGCTGACCAAAACAAAACAAGAAAAC  291

seq1  ACAATTAAATGAGTTGTCTCCACTCAGAGTGATATTTAAGCATTCCCCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTAAATGAGTTGTCTCCACTCAGAGTGATATTTAAGCATTCCCCTG  341

seq1  TAAAGGTTTTAAAATATTTTAATTAAAATAAATAAACAAACTAACAATGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGTTTTAAAATATTTTAATTAAAATAAATAAACAAACTAACAATGC  391

seq1  TTTGCTCAGATCAACAGAAATCCTGATGTTAAGTTCGTAGTGTGACAGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCAGATCAACAGAAATCCTGATGTTAAGTTCGTAGTGTGACAGAA  441

seq1  AATCATTTCCCTGCTTTGTGATTCTGAATCGTAGAATGAAACCCTCTAGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTTCCCTGCTTTGTGATTCTGAATCGTAGAATGAAACCCTCTAGC  491

seq1  TCCTCAACTGCTTCTGTACTGGGATCCTGACCCTGTGTTTCCTAGCAACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAACTGCTTCTGTACTGGGATCCTGACCCTGTGTTTCCTAGCAACA  541

seq1  GCTTTCAAAAAACTCTGTGAAAGACCTGGGACGATCTTCACAGTAAGCAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCAAAAAACTCTGTGAAAGACCTGGGACGATCTTCACAGTAAGCAC  591

seq1  AAAGAGCTAGAGCTTTGAGTCATCAAAATCCCAGGATTAAGTCCCAGCTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCTAGAGCTTTGAGTCATCAAAATCCCAGGATTAAGTCCCAGCTC  641

seq1  AGCTCATCAGACACAGTGTGAGTTTAGATAATTGTCCTACCCTTCAAAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCATCAGACACAGTGTGAGTTTAGATAATTGTCCTACCCTTCAAAGG  691

seq1  CAGTTGCCCTGATGGCTGATATTCACAGAAACCACTTCCTGGAGTGTTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGCCCTGATGGCTGATATTCACAGAAACCACTTCCTGGAGTGTTTT  741

seq1  GCCATGGGGCTATGGGCATCCTCAATGTTCTCAGAGACAATTAGCATGGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGGGCTATGGGCATCCTCAATGTTCTCAGAGACAATTAGCATGGT  791

seq1  CTAACTAATCTCTAACATTAACCAGCTCCATGGATGCCAACAAAGTAGCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTAATCTCTAACATTAACCAGCTCCATGGATGCCAACAAAGTAGCT  841

seq1  ATATCCCCAAGAACCCCAGCATCCTTTTTTATGAAGCAAAGAACTTGAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCCCAAGAACCCCAGCATCCTTTTTTATGAAGCAAAGAACTTGAAT  891

seq1  AAGATGTCCCACATCCTCCCTGGCCCTGGAATACTCCAAATTGTGAGCCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTCCCACATCCTCCCTGGCCCTGGAATACTCCAAATTGTGAGCCC  941

seq1  AGTCTCAGGATGTTCAGCAGCTATGACTTCATTCACATCATCCTCTCCTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCAGGATGTTCAGCAGCTATGACTTCATTCACATCATCCTCTCCTC  991

seq1  CGTAAACATTCTTTATTTCCTCCATCCGTGTCTGGCTCTAGATATCATCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAACATTCTTTATTTCCTCCATCCGTGTCTGGCTCTAGATATCATCT  1041

seq1  CAGTCTGTAAGAAAAGGAAAGAATTC  1075
      ||||||||||||||||||||||||||
seq2  CAGTCTGTAAGAAAAGGAAAGAATTC  1067